Mini 1 - Fund 2 pt.1 Flashcards
What is MALDI-TOF?
Automatic, measures exact masses of numerous proteins and produces protein ‘fingerprint’ for microorganisms. Can identify CULTURED organisms quickly.
What is karyorrhesis?
Fragmentation of pyjnotic nucleus (see nuclear dust in interstitium).
What is the outer layer of fungi and parasites?
Rigid cell wall with chitin, flexible membrane.
What is a Thayer-Martin agar?
A selective version of chocolate agar to isolate Neisseria gonorrhoeae.
What is the D antigen?
Rhesus.
What does cytotonic mean?
Alter cellular pathways but don’t kill the cells of the host.
Describe Triple Sugar Iron agar.
Determines in a tube if organism is a sugar fermenter (turns yellow if ferments). If only glucose is fermented then only the butt turns yellow. H2S production makes a black precipitate.
For a 70kg person, what does a Vd of >50L mean?
Stored within specific cells or tissues.
What kind of integrins do monocytes have and what are their ligands?
LFA-1, MCA-1 - ligands ICAM-1, ICAM-2 VLA-4 - ligand VCAM-1
What are the two steps of bacterial attachment?
Docking (nonspecific) and Anchoring (specific).
What is biofilm?
Collection of aggregated bacteria bound to a surface and embedded in self-made polymeric matrix. Good for resistance, can communicate through it.
What is the protein secretion mechanism for gram(+) and gram(-) bacteria?
Shared GSP, the gram(-) one only gets to the periplasmic space. Gram(-) have additional mechamisms on their OM called injectisomes.
What is a western immunoblot?
Mostly used for HIV. Ag separated and blotted to membrane (commercially prepared). Membrane is inculated with patient serum.
What are the antiapoptotic members of the BCL2 family and what do they do?
BCL2, BCL-XL, MCL-1. Block proapoptotic (BAX and BAK).
What is a titer?
The highest dilution of serum able to agglutinate a particular antigen.
What is a NET?
Neutrophil extracellular trap - nuclear chromatin meshwork to capture pathogens and then kill then with bactericidal granular content.
How is bioavailability measured mathematically?
AUCotherroute/AUCiv For a plasma concentration over time graph.
What are the anatomical sterile sites?
Blood, BM, CSF, serous fluid (sputum), tissues, bladder, lower respiratory tract.
What kind of drugs need to enter through endocytosis?
Very large ones (>5000D)
What type of temperature/acidity restrictions do pathogens have?
Mostly mesophiles/neutrophiles.
What do glycopeptides target and what is a common example?
Vancomycin. Binds stem peptide D-ala D-ala to prevent transpeptidation and transglycosylation.
Describe Enzymatic fat necrosis.
Focal areas of fat destruction resulting from an abnormal release of activated pancreatic enzymes into pancreas and peritoneal cavity. Chalky-white calcium deposits, shadowy outlines of necrotic adipocytes, basophilic amorphous calcium deposits.
What are susceptibility and permissiveness?
Host specificity. Susceptibility = possesses surface receptors allowing attachment. Permissiveness = contains all components required for virion production.
What are the types of antagonism?
Pharmacological (drug acts on same receptor), pharmacokinetic (prevents absorption or increases elimination), physiological/functional (antagonist acts on different receptor), or chemical (combines with drug to inactivate).
How does aspirin interact with anticoagulants?
Increases anticoagulation effect.
When are flocculation tests used?
When the antigen is particulate.
What is a noncomposite transposon?
An insertion sequence with genes beyond tp in the insertion sequence.
What is Vd defined as?
Volume of distribution - measures passage from systemic circulation to body tissues.
What are some features of drug allergy?
<10% of all ADEs, related to frequency of exposure and can be influenced by associate illness, not dose-dependent. Only in drugs MW>6000 or ones that form a hapten.
Describe acetaminophen.
Good COX inhibitor in CNS, antipyretic and analgesic. No effects on inhibition of peripheral PG synthesis. Very few ADEs (liver toxicity when overdose or in risk patients)
What does glutathione peroxidase do?
Breaks down peroxide and hydroxide. GSH + one of them forms GSSG and water
Describe eosin methylene blue agar.
Inhibits gram(+) bacteria. Lactose fermenters appear blue-black, and non-fermenters appear clear. Strong fermenters (like E.coli can have a shiny green metallic sheen).
Describe analgesic nephropathy.
Renal papillary necrosis and chronic interstitial nephritis - back pain, hematuria, decreased concentrating capacity of the kidney. Usually in 30-40y/o 5:1 females, due to chronic antipyretic analgesic use.
What does ‘naturally competent’ mean? Give two examples.
Can do transformation. Streptococcus pneumoniae and Haemophilius influenzae
What caspases are used in the apoptotic pathways?
Intrinsic - 8
Extrinsic - 9
What is a drug’s intrinsic activity?
Ability to initiate changes that lead to a biologic response.
What is the most common conjugation of xenobiotics?
Glucuronidation. Occurs in liver, catalyzed by glucuroosyl transferase, generally an inactivation reaction.
What is a ‘slow acetylator’?
An autosomal recessive trait of acetylating enzyme deficiency - impairs drug biotransformation.
What’s the most common agglutination test?
Latex agglutination.
What are the methods of envelopment?
Simultaneous (capsid forms as viral particle buds through membrane) Sequential (capsid forms, accessory proteins and envelope added in stepwise fashion)
What is a Gell&Coombs type III sensitivity?
Immune complex mediated reaction - immune complex deposits/aggregates on basement membrane of blood vessels, causing complement activation/inflammation. IgM or IgG involved but IgE can play a role.
What is an absolute contraindication of beta blockers?
AV block.
When does glucuronide reach adult values?
Age 3-4.
What are blastoconidia?
Conidia formed by dimorphic fungi in their yeast stage.
After what amount of time is a drug said to be effectively eliminated from the body?
Four half lives.
Where are Leishmaniasis amastigotes found?
Macrophages.
What is SOAP?
Subjective, Objective, Assessment, Plan.
What is Fibrinous inflammation?
A type of acute inflammation. Fibrin is found with leukocytes and necrotic tissues. Caused by increased vascular permeability. Outcome is resolution or organization.
Describe Caseous necrosis.
Loss of tissue architecture and cell outlines, firm in consistency. Caused by tuberculosis and others. Eosinophilic and structureless. Gross - ‘cheese-like’
How do fungi and parasites replicate?
Bud or mitose, mitose.
What are the types of parasites?
Protozoa - complex unicellular organisms with defined nucleus and other organelles. Helminths - multicellular
What is a viral envelope made of?
Host membrane’s lipids, host and viral proteins and glycoproteins.
Why are samples taken at the outer margins offungal lesions?
Because hyphae undergo apical growth.
What is xanthoma and xanthelasma?
Accumulation of cholesterol in the skin. Xanthelasma is it around the eyes.
What is the difference between acute and chronic inflammation?
Acute - mediated by neutrophils, repair done by regeneration. Chronic - mediated by lymphocytes and macrophages, repair done by healing (CT formation).
What determines whether an injury will scar or regenerate?
Basement membrane integrity.
What cells contribute to chronic inflammation?
MPS, blood monocytes, rissue macrophages, also lymphocytes, maybe other PMNs.
What is a caseating vs noncaseating granulom?
Caseating is a central area of caseous necrosis surrounded by epithelioids/Langhans cells, then lymphocytes, plasma cells, fibroblasts. TB causes this. A noncaseating granumola (ie sarcoidosis) does not have the central area of caseous necrosis.
What NSAIDs inhibit PLA2?
Indomethacin.
What does bacitracin target?
Prevents bactoprenol-PP recycling.
What does PDGF promote?
Migration/proliferation of monocytes, fibroplasts, pericytes, smooth muscle cells.
What are the types of fungi?
Yeasts (single-cell, bud) or Moulds (grow by extending filamentous hyphae and reproduce asexually by releassing spores from specialized hyphae called condiophores/spongiophores).
Describe sublingual/buccal administration
Absorption usually rapid, through oral mucosa. First pass effect avoided as oral veins flow directly to cava veins.
What kind of integrins do neutrophils have and what are their ligands?
LFA-1, ligands ICAM-1, ICAM-2
What is chemically defined vs complex media?
Chemically defined - you know the exact composition of the media. Complex you don’t. Most obligate human pathogens need complex media.
What DNA viruses do not replicate in the nucleus?
Poxviridae.
What is ergosterol and what drug(s) target(s) it?
Distinguishing feature of cell membranes of fungi. Azoles and polyene antifungals target it.
What is an indirect ELISA?
Ag-coated wells looking for the presence of a specific antibody.
What are ‘clear profiles’?
ER swelling in damaged cells.
What are chlamydiaceae?
Unrelated to gram(-) and unreactive to stain. Has an OM with LPS but no PG (instead Cys-rich envelope proteins).
What is Reye’s syndrome?
In kids under 18, microvesicular fatty infiltration of liver and other organs. Respiratory infection, after 4 days nausea/vomiting, sudden change in mental status, lab signs of liver damage. May be mild OR may progress to fatal toxic encephalopathy.
What is the definitive host of toxoplasmosis?
Cat.
What are phases of bacterial growth?
Lag, log, stationary, death.
What is the theta model of replication?
Replicates semiconservatively at ori.
What vitamins are ROS scavengers?
E, C, retinoids. E is terminal electron acceptor, C directly inactivates superoxide and hydroxide radical, retinoids block free radical chain reactions.
What is the urease test?
Sees if organism breaks down urea (amides), producing ammonia. If positive changes from yellow to pink.
What kind of viruses generally do sequential assembly?
Icosahedral
What is direct vs indirect Coombs test?
Direct tests presence of blood Abs bound to erythrocytes, indirect tests ones in serum.
What do drug clearances of 100-150, >150, and <100 mean?
<100 = reabsorption/protein binding 100-150 = filtration >150 = secretion
What is the oral bioavailability and Vd and half life of salicylic acid?
100% and 12L and dose-dependent half life.
What do beta-lactams target?
Transpeptidases - results in weak PG.
What are arthroconidia?
Conidia formed by fragmentation of hyphae (may occur in tissues or environment).
What are C3a, C5a, LTB4, and HETE involved in?
Chemotaxis, leukocyte recruitment and activation.
What is an ulcer vs a wound?
Ulcer - defect on an organ surface made by shedding of inflamed necrotic tissue Wound - Defect produced by mechanical force.
What percent of patients chronically treated with NSAIDs experience occult GI bleeding?
>70% - aspirin is the worst for this probably because of its irreversible mechanism
Describe Hektoen enteric agar.
Inhibits growth of gram(+) bacteria. Fermenters appear yellow-orange and non-fermenters appear green/transparent. Organisms that produce H2S from sulfate will form a black precipitate.
What kind of drugs can reach systemic circulation by bulk flow transport through capillaries? What about ones that don’t fit that?
Ones <15000-16000D. Ones that are too big can enter systemic circulation through bulk flow transport through lymphatic vessels.
What is OARS?
Open-ended questions (well timed) Affirmations Reflective listening statements Summarize to communicate understanding
What is a desmoid/aggressive fibromatosis?
Rare tumor-like CT growth.
What are bacterial essentials for growth?
C, water, N, P, O, S, ions (especially Fe)
What are these terms as they relate to virus infection? Eclipse, latent phase, yield.
Eclipse (no virions), Latent (time to release of first virion), Yield (# of virions released by cell).
What RNA viruses do not replicate in the cytoplasm?
Retroviridae, Deltaviridae, Orthomyxoviridae.
What is karyolysis?
Nuclear dissolution (can follow karyorrhexis or develop ab novo).
What are some special contraindications for indomethacin?
Same ones as for other NSAIDs, Parkinson’s seizure disorders, depression, renal disease, HF, DM, SLE, EC volume depletion, elderly, 3rd trimester pregnancy.
What is a composite transposon?
Genes flanked by insertion sequences.
What is a viable plate count?
CFUs/mL
What are conidia?
Airborne fungal spores.
What is fibrosis?
Excessive collagen and other ECM components in visceral organs. Caused by chronic inflammation and immune diorders associated with loss of tissue.
What are Acid-fast bacteria? Name 3.
Gram(+) but more complex because of mycolic acids - helps them resist chemicals including phagolysosomes and some antibiotics. Mycobacteria, Nocardia, Corynebacteria.
What are coxibs?
Selective COX2 inhibitors. Highly effective antiinflammatory effect, lack of effect on platelet aggregation. Have very low incidence of gastric ulceration and intolerance!
What are the types of helminths?
Cestodes (flatworms), Nematodes (roundworms), Trematodes (flukes).
What are myelin figures?
The result of damaged membranes in cells (concentric circle looking things).
How is bradykinin produced? What’s it a mediator for?
Cleavage of kininogen by kallikrein. Pain.
What is the catalase test?
Sees if organism can break down hydrogen peroxide. If positive, produces bubbles.
What is tropism?
Specificity.
What are the BH3 sensors members of the BCL2 family and what do they do?
BAD, BIM, BID, Puma, Noxa. Sense cellular stress and damage, regulate balance between anti and proapoptotic groups.
What genera have sialic acid in their capsules (molecular mimicry)?
Neisseria, Haemophilius.
What are some stomach and liver effects of aspirin?
Erosive gastritis, prolonged gastric emptying, decreased PG synthesis, increased gastric acid secretion, decreased mucus and bicarbonate. Direct stimulation of bile secretion, possible Reye’s, inhibition of Vit K dependent hemostasis.
What kind of cells are found in chronic nonspecific vs chronic purulent inflammation?
Mainly mononuclear cells vs neutrophils.
What are the two types of analgesics and to which type do NSAIDs belong?
Antipyretic (peripheral, nonopioid, aspirin-like) and narcotic (central, opiate, opioid, morphine-like).
What’s the main mechanism of NSAIDs?
COX inhibition. Aspirin does it irreversibly.
What are adhesins?
Molecules on pathogens that bind eukaryotic receptors.
What’s the difference between exudate and transudate?
Exudate is high specific gravity, high protein content, has cells. Transudate is the opposite - very few cells maybe some lymphocytes.
Are fungi and parasites motile?
No and mostly
How is calcification identified?
IC or EC deposits of amorphous basophilic material - or large round laminated psammona bodies. Identified in the von Kossa stain.
Name some chemoattractants.
Bacterial N-formyl methionine, IL-8, IL-1, TNF, C3a, C5a, LTB4, 5-HETE.
What are some areas of the brain outside the BBB?
Posterior pituitary, ME of hypothalamus (ventral part), supraoptic crest, subfomical region, area postrema.
What is tachyphylaxis?
Rapid tolerance.
What does VEGF promote?
Casodilation via NO production stimulation, angiogenesis.
What is fatty change?
Abnormal triglyceride accumulation in cytosol of parenchymal cells. Mostly liver, heart, muscle, and kidneys affected. See clear vacuoles in cytosol of water and glycogen.
Describe the two main modes of viral entry.
Endocytosis (RME), membrane fusion (only if enveloped).
What is transformation, transduction, conjugation?
Transformation is uptake of naked DNA across a cell wall, Transduction is uptake of DNA via phage, Conjugation is uptake of DNA via sex pilus.
What are the three principles of motivational interviewing?
1: express empathy 2: develop discrepancy 3: roll with resistance
What is the presentation of a myeloperoxidase deficiency?
95% asymptomatic, 5% recurrent fungal infections.
Describe MacConkey Agar.
Selective - bile salts and crystal violet inhibit growth of gram(+) bacteria. Differential - lactose metabolizers turn red (neutral red indicator) and nonmetabolizers remain colourless.
What are spirochetes? Name three.
Gram(-) thin spiral bacteria that must be visualized with a dark field or fluorescence microscopy. Has endoflagella between PG and OM. Treponema, Borrelia, Leptospira.
What is DnaB?
Helicase.
What’s the 50S subunit made of?
5S rRNA, 23rRNA, 34 polypeptides.
What are Penicillin-binding proteins (PBPs)?
Do lots of jobs in the PG biosynthesis process.
What do Th2 cells do?
Secrete IL-4 (and IL-5 and IL-13) to activate M2 macrophages.
What NSAIDs inhibit ox. rad production?
Diclofenac, piroxicam.
What is DnaA?
Directs replication initiation.
What are gyrase and topoisomerase IV?
Type II topoisomerases (relax supercoiling). ALso topoisomerase IV decatenates/unlinks replicated molecules.
What are major causes in contraction in wound healing?
Burns, MMP deficiency.
What are the CNS protozoa?
Naegleria fowleri and Acenthamoeba culbertsoni (less aggressive).
How much of aspirin is biotransformed and excreted?
85% transformed in liver, 15% excreted in acid urine, 85% in alkaline urine.
What are some predisposing factors to adverse drug effects?
<1y/o. >60 y/o, being female, liver/kidney disease.
Describe Gangrenous necrosis.
Coagulative or liquefactive of organs which contact the environment. Dry - ischemic/coagulative of limbs (usually lower), may progress to wet. Wet - secondary bacterial infection and digestion of already dead tissue. Gas - infectious disease.
What kind of viruses release through lysis vs budding? What are the other ways of viral release?
Lysis usually naked, some enveloped. Budding usually enveloped. Exocytosis (some enveloped) and direct transfer to other cell - often just part of the virus.
What are the relative speeds of ion channels, TM/GCPRs, IC receptors?
Ion channels - milliseconds, TM/GCPRs - sec/mins, IC receptors - hours/days.
What is the difference between a hypertrophic scar and a keloid?
Hypertrophic stays within wound marginc, regresses with time. Keloid does neither.
What is the Fenton reaction?
Fe2+ + H2O2 -> Fe3+ + hydroxide + hydroxide radical
Describe Cys-Tellurite agar.
For isolation of Corynebacterium diphtheriae. Appears grey/black with a brown halo. Potassium tellurite inhibit gram(-) bacteria.
What is metaplasia vs dysplasia?
Replacement of one mature cell type with another vs expansion of immature epithelial cells.
What are the two main monooxygenases and what do they need?
Cyt P450 and NADPH-cyt P450. Need NADPH and molecular oxygen.