Midterm Study Deck Flashcards
3 Domains
Bacteria, Archaea, Eukaryotic
What are humans classified as?
Eukarya, Animelia, HomoSapiens
What are the 4 kingdoms of Eukarya?
Protista, Animalia, Fungi, Plantae
Human Characteristics
Bipedalism: walk on two legs, frees hands for carrying
Large brain: relative to body size
Capacity for complex language: written, oral, symbols, etc.
Opposable thumbs: thumbs can move into position to oppose the tips of the fingers
How to answer questions in science?
- Observe and generalize
- Formulate a hypothesis
- Make a testable prediction
- Experiment or observe
* Independent variable: intentionally manipulated or changed
* Dependent variable: changes in response to changes - Modify the hypothesis as necessary and repeat
Chemistry of Living Things: Broken Down
Atoms are the smallest functional units of elements, elements make up matter, matter occupies mass and space, chemical bonds link atoms to form molecules
Name the 5 types of chemical bonds
o Polar covalent bonds
o Non-polar covalent bonds
o Ionic bonds
o Hydrogen bonds
o Van der Waals Force
6 main elements in the body
Oxygen
Carbon
Hydrogen (one of the most important ions in the body)
Nitrogen
Calcium
Phosphorus
Acid
high H+ concentration in solution, pH < 7
Base
Loq H+ concentration in solution, pH > 7
Buffer
any substance that tends to minimize the changes in pH that might otherwise occur when an acid or base is added to a solution
4 types of organic molecules
Carbohydrates
Lipids
Proteins
Nucleic acids
Carbon
Comprises 18% of the body by weight
Can form single, double or triple bonds
Often bonds with hydrogen, nitrogen, oxygen, or other carbons
Can form linear, branched, or ring-shaped molecules
4 valence electrons so wants 4 more
Carbohydrates
Used for energy and structural support
General formula CH2O
Backbone of carbons with hydrogen and oxygen attached in the same proportion as they appear in water
Functions:
* Energy source for most organisms
* Structural support, such as cellulose in plant cell walls
Monosaccharides
Simple sugars
Eg. Glucose, fructose, galactose, RNA, DNA
Glucose monomers can be joined to form more complex carbs
Monosaccharides can be linked together vis dehydration synthesis
* Also called condensation reaction
* Bonding of molecules with removal of water molecule
Disaccharides
two monosaccharides linked together
Sucrose: glucose + fructose
Maltose: glucose + glucose
Lactose: glucose + galactose
Polysaccharides
Store energy
Thousands of monosaccharides joined in linear and/or branched chains
Functions:
* Energy storage
o Starch: made in plants
o Glycogen: made in animals
* Structural support
o Cellulose: indigestible polysaccharide made in plants for structural support
Hydrolysis
Break down organic molecules by addition of water molecule
Lipids
o Insoluble in water (hydrophobic)
o 3 classes
o Lipids are the only class of macromolecules that are not assembled by joining monomers to form polymers
Triglycerides
- Energy storage molecules
- AKA fats and oil
- Composed of glycerol bonded to three fatty acids
o Fatty acudes
Saturated (in fats) - all single bonds between carbons - Can be closely packed
- Generally solid at room temperature
Unsaturated (in oils)—include some double bonds between carbons - Better for you because don’t come together as much
o Stored in adipose tissue
Phospholipids
- Cell membrane structure
o Glycerol plus two fatty acids and phosphate group
o One end of molecule (phosphate and glycerol) is water soluble (hydrophilic head)
o Other end of molecule (two fatty acid tails) is water insoluble (hydrophobic tails)
o Primary component of cell membranes
Steroids
- Carbon-based ring structures – four carbon rings
- E.g. cholesterol
- Hormones
o Estrogen,
o testosterone
Proteins
o Complex structures constructed of amino acides
Long chains (polymers) of subunits (monomers) called amino acids
* A polypeptide longer than 100 amino acids that has a complex structure and function
o Protein Function Depends on Structure, Charges can change the shape of proteins, but function of protein depended on shape.
Amino Acids
- 20 different types
- Amino end, carboxyl end, R group
Amino acids are joined by peptide bonds, which are produced by dehydration synthesis reactions
Peptide Bond
- Forms between carboxyl end of one amino acid and amino end of the next amino acid
Polypeptide
- A polymer of 3–100 amino acids
Primary Structure
- Amino acide sequence
- Stabilized by peptide bonds
Secondary Structure
- How the chain is oriented in space
- Alpha helix
- Beta pleated sheets
- Stabilized by hydrogen bonds
Tertiary Structure
- Three-dimensional shape how proteins twist and fold
- Stabilized by a combination of covalent bonds, ionic bonds, hydrophobic interactions, and hydrogen bonds
- Creates polar and nonpolar areas within the protein molecule
Quaternary Structure
- Two or more polypeptide chains are joined.
Denaturation
permanent disruption of protein structure leading to loss of biological function
Nucleic Acid
o Store genetic information
o Nucleic acids are long chains (polymers) containing monomer subunits known as nucleotides
o Two types of nucleic acids
DNA: deoxyribonucleic acid
RNA: ribonucleic acid
DNA
o DNA contains the instructions for producing RNA
RNA
o RNA contains the instructions for producing proteins
o RNA is shorter, representing only the segment of DNA that codes for one or more proteins
Nucleotides
Building blocks (monomers) of nucleic acids
o Each nucleotide contains
Five-carbon sugar
* Deoxyribose (in DNA nucleotides)
* Ribose (in RNA nucleotides)
Nitrogenous base
* A,G,C,T,U
Phosphate group
Pairing of bases DNA
Adenine-Thyamine (double bonded)
Cytosine-Guanine (triple bonded)
Pairing of bases RNA
- A-Uracil (double bonded)
- G-C (triple bonded)
Prokaryotic Cells
o More “primitive”
o Internal environment of cell is not divided into membrane-bound compartments
o Prokaryotes Lack a Nucleus and Organelles
Prokaryotes include all organisms in the domains Bacteria and Archaea
Prokaryotic cell structure consists of:
* Plasma membrane
* Cytoplasm
* Genetic material is not enclosed by a membrane
* No membrane-bound organelles
Prokaryotic cells are generally smaller than eukaryotic cells
Eukaryotic Cells
o Internal environment is divided into membrane-bound compartments called organelles
o Eukaryotes Have a Nucleus, Cytoplasm, and Organelles
Eukaryotes include human and all other animals, plants, fungi, and protists
Eukaryotic cell structure includes:
* Plasma membrane
* Nucleus
o Membrane-bound genetic material
* Cytoplasm
o Internal cell contents, excluding the nucleus
o Includes soft gel-like fluid called cytosol
* Organelles
o Variety of membrane-bound structures within the cytoplasm with specialized functions
Light Microscope
o Magnifies up to 1000x
o Can be used to view living samples
Transmission Electron Microscope
o Magnifies up to 100 000x
Can reveal internal details of cell structure
Scanning Electron Microscope
Magnifies up to 100 000x
Provides three-dimensional view of cell surface
Nucleus
Controls the cell, information centre Contains DNA.
Large, spherical organelle in the cell. Appears with multiple pores on the surface. Contains a smaller sphere within it
o Double-layered nuclear membrane
o Nuclear pores: permit passage of RNA and proteins
o Chromosomes: D N A (genetic information)
o Nucleolus: site of synthesis of ribosome components
Ribosomes
Synthesize proteins
- Composed of RNA and protein
- Role of ribosomes: site of protein synthesis
- Location
o Free: floating in cytoplasm
These ribosomes synthesize proteins for immediate use in the cell
o Bound: attached to outer surface of endoplasmic reticulum
These ribosomes synthesize proteins that will be transported to other organelles or exported from the cell
Rough Endoplasmic reticulum
manufacturing center (calcium storage, protein synthesis, lipid metabolism)
Layered and ruffled membranous structure continuous with the nuclear membrane. Dotted with ribosomes.
- Highly folded membranous network
- Two types of endoplasmic reticulum (E R)
o Rough E R (has ribosomes on surface)
Attached ribosomes manufacture proteins which may be modified in the E R, particularly those that will be secreted from the cell
o Smooth E R (no ribosomes on surface)
Lipid synthesis, including the synthesis of some hormones
Packaging of proteins and lipids for delivery to Golgi apparatus
Golgi Apparatus
Refines, packages, and ships
Large organelle consisting of stacks of flattened membranous sacs and tubules
- Refines synthesized products
- Serves as packaging and shipping center
- Products are packaged into vesicles and shipped to other locations within the cell or to the cell membrane for export
Vesicles
Membrane bound storage and stripping centers
Small Spherical vesicle that has fused with the inside of the plasma membrane.
Mitochondria
Provide energy (powerhouse of the cell)
Oval or kidney shaped organelle that is filled with a matrix of ruffles.
- Surrounded by a double membrane
- Inner membrane is highly folded, more surface area
- Divides mitochondria into:
Inner compartment
Outer compartment
- Site of cellular respiration
- Utilizes O2 and produces CO2
- Generates (36-38) ATP—a quick source of energy
Nucleolus
Synthesis of ribosomal subunits
A small, dense spherical structure in the nucleus
Plasma Membrane
Controls movement of materials into and out of the cell. Description, Outer edge and barrier of the cell
Cytosol
Semifluid gel material inside the cell
The region between the plasma membrane and the nucleus.
Peroxisome
Destroys cellular toxic waste.
Small, spherical vesicle.
Centrioles.
Microtubular structures involved in cell division
Two bundles of long rods.
Cytoskeleton
Structural framework of the cell.
Long, thin filaments found throughout the cell.
Lysosome
Digests damaged organelles and cellular debris.
Small Spherical vesicle.
Fat
Long term energy source
o Triglycerides
o Long-term energy storage in animals
o Stored in cytoplasm of fat cells
Glycogen
Short term energy source
o Carbohydrate storage
o Short-term energy storage in animals
o Stored in cytoplasm of muscle cells and liver cells
Cytoskeleton
Internal scaffolding - helps maintain cell shape
- Cytoskeleton is composed of:
o Microtubules: tiny hollow tubes of protein
o Microfilaments: thin solid fibers of protein
o Microtubules and microfilaments form framework that supports the cell
Much like tent poles support a tent
o Cytoskeleton also supports and anchors other cellular structures
Cilia
specialized for movement
o Short, many
o Found on cells lining airways and certain ducts
Flagella
specialized for movement
o Long, single
o Enable spermatozoa to swim
Plasma Membrane
Surrounds the cell
- Separates a cell from its environment
- Is selectively permeable
o Permits movement of some substances into and out of the cell, but blocks others
- Enables transfer of information between environment and cell
The Plasma Membrane Is a Lipid Bilayer
- Plasma membrane is composed of:
o Phospholipids: two layers (bilayer)
Polar heads face outside and face the cytoplasm
Nonpolar tails meet in center
o Cholesterol: increases mechanical strength
o Proteins: provide means of transport through membrane for molecules and for information
- Nonrigid
Passive Transport
cell does not need to expend energy for this
o Diffusion
o Osmosis
o Facilitated diffusion
o a type of cellular transport in which substances such as ions and molecules move down their respective concentration gradients.
Active transport
cell must expend energy
Bulk transport
o Involves membranous vesicles to move larger substances
Endocytosis
Exocytosis
- the movement of ions or molecules across a cell membrane into a region of higher concentration, assisted by enzymes and requiring energy.
- Requires a membrane protein (transporter)
- These proteins are sometimes called “pumps”
- Requires A T P or other energy source
Diffusion
movement of molecules from a region of high concentration to a region of low concentration
- Requires that there be a concentration gradient
- A difference in concentration between two points
- High concentration → low concentration
- When the concentration of a substance is the same throughout a solution—it has reached equilibrium
- Diffusion is only effective in the body over short distances (across membranes, within cells)
Osmosis
Diffusion of water across a selectively permeable membrane
* Water moves from an area of low solute concentration to an area of high solute concentration
* Water moves down its own concentration gradient
* Osmotic pressure: fluid pressure required to stop or oppose osmosis
Diffusion Directly Through the Lipid Bilayer
- Small lipid soluble substances can move directly through the phospholipid bilayer without the assistance of a channel or transporter protein
- Transport of small, uncharged, nonpolar molecules
Diffusion Through Protein Channels
- Protein channels span the membrane and enable the transport of some molecules
- Size, shape, and electrical charges of amino acids lining the channel determine what molecules can pass through
o Some always open
o Others are “gated”—the channel can open or close under certain conditions
o Examples of substances transported:
- (osmosis) - Ions
Facilitated Transport
- Also referred to as facilitated diffusion
- Binding of a specific molecule to a membrane transport protein triggers a change in the shape of the protein which then carries the molecule through the membrane bilayer
- Transporter proteins are highly selective for specific substances
- Examples of substances transported:
o Glucose
o Amino acids
sodium-potassium pump
Active Transport
* Transports sodium out of the cell
* Transports potassium into the cell
* Both ions are transported against their concentration gradient
Endocytosis
brings substances into the cell
o A substance in the extracellular environment is surrounded by the cell’s plasma membrane and internalized, forming a membrane-bound vesicle
o Some vesicles are selective and have receptors for specific substances
Example: transport of insulin into cells
Exocytosis
expels substances from the cell
o Substance is contained within a membranous vesicle, which then fuses with the plasma membrane, releasing the substance to the external environment
o Release of wastes, indigestible material, secretion of special products
Tonicity
relative concentration of solutes in two fluids
Isotonic
o Extracellular and intracellular solute concentrations are equal.
o Cells maintain a normal volume in isotonic extracellular fluids.
o Regulatory mechanisms maintain extracellular fluid that is isotonic with intracellular fluid
Hypertonic
o Extracellular solute concentration higher than intracellular solute concentration (OUTSIDE HIGHER THAN INSIDE)
o Water will diffuse out of cell (osmosis)—moving toward the higher solute concentration
o Cell may shrink and die
Hypotonic
o Extracellular solute concentration lower than intracellular solute concentration (OUTSIDE LOWER THAN INSIDE)
o Water will diffuse into cell (osmosis)—moving toward higher solute concentration
o Cell may swell and burst
Glucose
- Energy in glucose is used to generate A T P.
- One glucose molecule may yield 36 A T P.
- A T P can then be used to do cellular work., more readily used
Cellular Respiration
the breakdown of glucose in the presence of oxygen to yield A T P
- Four stages of cellular respiration
- Glycolysis
- Preparatory step
- Citric acid cycle
- Electron transport system and oxidative phosphorylation
Glycogen
1% of total energy reserves
- Can be rapidly catabolized to glucose, which then participates in cellular respiration
Fats
78% of total energy reserves
- Triglycerides have twice the energy of an equal amount of carbohydrates
Proteins
21% of total energy reserves
- Have the same amount of energy as an equal amount of carbohydrates
Lactic Acid
Made when cellular respiration doesn’t have oxygen, pyruvate will build up which converts to lactic acid. Build up in muscle causes burning sensation.
- In the absence of oxygen, glycolysis is the only ATP-producing step available. Glycolysis without oxygen results in lactic acid buildup.
Unicellular Organisms
- Earliest organisms were unicellular
- Unicellular organisms consist of just one cell
- Unicellular organisms depend on their immediate external environment which may vary extensively
Multicellular Organisms
- Consist of many cells
- Larger size
- Able to seek out or maintain a favorable external environment
- Cells specialize and contribute to the well-being of other cells
Tissues
- groups of specialized cells that are similar in structure and perform a common function
- Several types of tissue may be grouped to form an organ
- Four primary tissues
- Connective tissue
- Epithelial tissue
- Muscle tissue
- Nervous tissue
Epithelial Tissues
- Organized as sheets of cells that line or cover various surfaces and body cavities, one or more layers
- Ex. Skin, mouth lining, inner surfaces of digestive tract, lungs, bladder, blood vessel and kidney tubules
- Two basic purposes
- Protection, secretion, and absorption
Glandular epithelia
Epithelial cells adapted to form glands
Glands: epithelial tissues specialized to synthesize and secrete a product
Exocrine glands
(exo- means “outside” or “outward”)
* Secrete their products into a hollow organ or duct.
Examples of exocrine glands are the glands in your mouth that secrete saliva, glands in your skin that excrete sweat, and glands in your stomach that produce digestive acid.
Endocrine gland
- Secrete substances called hormones into the bloodstream.
One endocrine gland is the thyroid gland, which secretes several hormones that help regulate your body’s growth and metabolism.
Squamous Tissue
Flattened cells
Forms outer surface of the skin
Line blood vessels, lungs, mouth, throat
Cuboidal Tissue
Cube-shaped cells
Form lining of kidney tubules, glandular tissue
Columnar
Column-shaped (tall, rectangular) cells
Line digestive tract, certain reproductive organs, larynx
May include goblet cells that secrete mucus
Single Layered Epithelial Tissue
Adapted for diffusion across cell barriers
Line glands, and respiratory, digestive, reproductive systems
Stratified: Multi Layer Epithelial Tissue
Provide protection, as in the skin surface
Basement Membrane
- Noncellular layer directly beneath epithelial tissue
- Composed of proteins secreted by epithelial cells and connective tissue
- Provides structural support to overlying cells
- Attaches epithelial layer to underlying connective tissue
Connective Tissue
- Supports the softer organs of the body against gravity
- Connects the parts of the body together
- Stores fat
- Produces the cells of blood
- Matrix provides the strength
- Two general types
- Fibrous
- Specialized
Fibrous Connective Tissue
- Function: provides strength, support, and elasticity
- Contains fibers and cells embedded in matrix
- Cells: fibroblasts, macrophages, lymphocytes, and neutrophils
- Fibers: collagen, elastic, and reticular
Fibers in Fibrous Connective Tissue
- Collagen fibers: strong, slightly flexible
- Elastic fibers: thinner, can stretch
- Reticular fibers: thin interconnective fibers of collagen
- Provide internal structural framework for soft organs (liver, spleen, lymph nodes)
Fibroblasts
produce and secrete proteins that form the fibers (collagen, elastin)
Cartilage
- Functions:
- Transitional tissue from which bone develops
- Maintains shape of nose and ears
- Protects and cushions joints and vertebrae
- Structure:
- Dense connective tissue of collagen fibers
- Slow to heal when injured
- There are no blood vessels in cartilage, so the mature cells (called chondrocytes) obtain their nutrients only by diffusion through the ground substance from blood vessels located outside the cartilage. Consequently, cartilage is slow to heal when injured.
Bone
- Contains relatively few living cells
- Matrix (ground substance) composed of calcium phosphate
- Does it contain blood vessels?
o Unlike cartilage, bone contains numerous blood vessels, and for this reason it can heal within four to six weeks after being injured.
Blood
- Plasma: cells suspended in a fluid matrix
- Cells: derived from stem cells in bone marrow
- Cell types include:
- Red blood cells: transport oxygen and nutrients to body cells and carry away the waste products of the cells metabolism.
- White blood cells: Found in the immune system to defend the body.
Platelets: Participate in the mechanisms that cause blood to clot following an injury
Adipose Tissue
- Function: fat storage
- Adipocytes: fat cells store fat in vacuoles
- Location of adipose tissue:
- Under the skin
- Around internal organs
- Beneficial roles:
- Insulation
- Cushioning
- Weight loss reduces size of individual adipocytes but does not necessarily reduce their number
Muscle Tissue
- Muscle cells shorten or contract, producing movement
- Muscle cells are called muscle fibers
- Long, thin
- Arranged parallel to each other
Skeletal Muscles
- Connect to tendons which attach to bone
- Contract (shorten) to move body parts
- Composed of thousands of individual muscle fibers (cells) arranged in parallel
- Fibers have multiple nuclei
- Voluntary—under conscious control
- Activated only by nerves
- 600 skeletal muscles
Cardiac Muscle
- Located only in the heart
- Shorter cells, blunt-ended, one nucleus per cell
- Gap junctions: allow direct electrical connections between adjoining cells
- Enable coordinated contraction of entire heart
- Involuntary: heart contracts rhythmically entirely on its own
Smooth Muscle
- Surrounds hollow organs and tubes
- blood vessels
- digestive tract
- uterus
- bladder
- Slim cells tapered at ends
- One nucleus per cell
- Gap junctions enable coordinated contraction
- Involuntary
Nervous Tissue
Consists primarily of cells that are specialized for generating and transmitting electrical impulses throughout the body. It forms a rapid communication network for the body. Nervous tissue is located in the brain, the spinal cord, and the nerves that transmit information to and from various organs.
Neuron
specialized nervous system cell
- Function: generate and transmit electrical impulses
- Structural components
cell body: nucleus and most of the cytoplasm
dendrites: cytoplasmic extensions from cell body, receive signals from other neurons
axon: transmits electrical impulses long distances
Glial Cells
- Function:
Surround and protect neurons
Provide nutrients to neurons
Organs
- Structures composed of two or more tissue types joined together; perform specific functions
Organ Systems
- Groups of organs that together serve a broad function that is important to survival either of the individual organism or a species.
Anterior Cavity
- Whole Front of body
- Divided by diaphragm into:
Thoracic cavity
Two pleural cavities (each contains a lung)
Pericardial cavity (encloses the heart)
Abdominal Cavity
Pelvic cavity: lower part of abdominal cavity
Posterior cavity
Back of head: Cranial + Vertebral
Cranial Cavity
Head