Midterm 2 Flashcards

You may prefer our related Brainscape-certified flashcards:
1
Q

What cells are totipotent and what does it mean to be differentiated?

A

Embryonic stem cells are totipotent (all powerful). They are able to transform into any type of cell depending on the right signals.

A cell is differentiated once it receives it’s programming to express only the genes that are necessary to support it’s purpose.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
2
Q

What is the Central Dogma of Biology?

A

All living organisms are made up of proteins. The Central Dogma of Biology describes how we get proteins from the DNA in our cells:

DNA is transcribed into messenger RNA (mRNA) which leaves the cell nucleus and meets up with ribosomes to synthesize proteins.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
3
Q

What happens during translation and transcription? Where do they occur?

Watch:
http://www.youtube.com/watch?v=41_Ne5mS2ls

A

During TRANSCRIPTION a DNA segment encounters a RNA polymerase in the nucleus and splits temporarily to create mRNA.

The mRNA then leaves the nucleus to meet up with a ribosome in the cytoplasm where TRANSLATION creates proteins from amino acids introduced by tRNA.

The tRNA is then discarded and the resulting chain of amino acids (polypeptide chain) is a protein which will fold into its final shape to determine the protein’s function.

NOTE: In prokaryotes, translation occurs immediately following transcription. In eukaryotes the mRNA is altered first.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
4
Q

What is the significance of the genetic code being nearly universal among all organisms?

A

A universal genetic code among all organisms means that we all descended from a common ancestor.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
5
Q

What were the prevailing viewpoints before Mendel’s research?

A

1600s - pre-made human contained in every sperm cell.

Theory of Blended Inheritance - offspring a blend of father/mother traits (white + red = pink).

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
6
Q

Why did Mendel choose the pea plant to use in his experiements?

A

Mendel chose to use pea plants because they:

  • were easy to grow
  • were quick to reproduce
  • could be cross-pollinated by hand
  • had easy to observe traits
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
7
Q

Why does each somatic cell have 2 alleles per gene?

A

Because one allele comes from mom, the other from dad. During meiosis, each gamete gets one copy of each gene, so when two gametes combine, there are two alleles in the resulting diploid cell (Law of Segregation).

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
8
Q

Describe Mendel’s system of crossing plants. What are monohybrid crosses?

A

Mendel first looked for traits the expressed two forms such as height. He then crossed plants that expressed the same trait, so short with short and tall with tall. Finally he crossed a short and tall plant.

For the short pair, the offspring were always short. For the tall pair and the short-tall pair, the offspring were sometimes tall and sometimes short.

This led Mendel to conculde that tall trait was DOMINANT and the short trait was RECESSIVE. Mendel uses a capital letter to denote dominant traits and lowercase for recessive.

A monohybrid cross is a mating between two individuals that are heterozygous (Tt) for one gene

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
9
Q

Be familiar with how to use a Punnett Square to predict genotypic and phenotypic ratios

A

Male parent: Tt
Femail parent: Tt

 T    t T  Tt   Tt t   Tt   tt

Phenotypic Ratio:
3 tall : 1 short OR 75% tall : 25% short

Genotypic Ratio:
1 TT : 2 Tt : 1 tt OR 25% TT : 50% Tt : 25% tt

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
10
Q

What is an allele?

A

An allele is a variant (alternative form) of a gene

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
11
Q

What does it mean to be dominant?

A

Dominant alleles are those that obscure other alleles. Dominant alleles occur most often in nature and are often considered the “normal” form of a gene.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
12
Q

What does it mean to be recessive?

A

Recessive alleles are often masked by dominant alleles and do not appear as often. Recessive alleles are often mutated versions of the dominant allele.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
13
Q

What does it mean to be homozygous?

A

Homozygous means both alleles are the same. Organisms can be homozygous dominant (TT) or homozygous recessive (tt) for a trait.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
14
Q

What does it mean to be heterozygous?

A

Heterozygous means an organism has both a dominant and recessive allele for a gene (Tt).

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
15
Q

What is a genotype?

A

A genotype tells us what alleles (genetic makeup) the individual has [e.g. TT, tt, or Tt]

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
16
Q

What is a phenotype?

A

A phtenotype is the outward expression of the allele, it is what we see (e.g. tall or short)

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
17
Q

What is a Punnett Square?

A

A Punnett Square allows us to see the probability of which alleles offspring might inherit from its parents.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
18
Q

What are the exceptions to Mendel’s Laws and what do each of them mean?

A

Incomplete dominance - occurs when offspring is heterozygous and has parents who are homozygous for two alleles. The single dominant allele does not code for enough of the dominant trait to be fully expressed, therefore appearing “blended”.

To test, simply cross heterozygous offspring again, which can yield the original homozygous dominant and recessive offspring.

Polygenic Traits - Traits that depend on more than one gene. Most human traits are polygenic (e.g. eye color).

Sex-linked Traits - Traits that are carried on the X-chromosome. Because males only have one X-chromosome, males only require one recessive gene to express a recessive phenotype. Females would require two since they have two X-chromosomes, therefore males are more likely to show recessive allele.

Environmental Influence - Traits that are influenced by the environment (e.g. skin color)

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
19
Q

How did people believe species arose before Darwin’s Theory of Natural Selection?

A

People believed that a set number of species was created at the same time the earth was and did not change or die out; the species were perfect.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
20
Q

What is evolution?

A

Evolution is the genetic change in a population over time.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
21
Q

What is evolution by natural selection and what are the three conditions necessary for natural selection?

A

Natural selection is a mechanism of evolution where the individuals with the best adaptations for the current, local environment as able to survive and reproduce, passing on the adaptations.

Natural selection requires:

  1. Variation for a trait (ex: fast vs. slow)
  2. Heritability (can be passed down to offspring)
  3. Differential Reproductive Success (more offspring produced than can survive, the best competitors win!)
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
22
Q

How does genetic variation arise and how does it contribute to differential reproductive success?

A

Genetic variation arises from random mutations and natural selection. Individuals that possess a certain variation of a gene may be better adapted to survive in current conditions and therefore able to reproduce successfully, passing on the same variation.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
23
Q

What is meant by evolutionary fitness?

A

Evolutionary fitness is a measure of reproductive success, the ability to pass on genes to the next generation in a particular environment.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
24
Q

What is the result of evolution by natural selection?

A

Populations become well-adapted to their current, local environment

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
25
Q

Why doesn’t natural selection produce “perfect” organisms?

A

Because as the environment changes, the traits that were once favored can become useless.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
26
Q

What are the three modes of natural selection?

A

Directional - one extreme is selected/most fit (e.g. light OR dark coloration: Pepper Moths).

Disruptive - both extremes are selected/most fit (e.g. large AND small: Coho Salmon)

Stabilizing - intermediate phenotype is selected/most fit (e.g. medium weight) - Birth weight

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
27
Q

What are the different mechanisms of evolution?

A

Natural Selection - Individuals with best adaptions for current conditions can survive and reproduce.

Sexual Selection - Fitness depends on attractiveness of certain traits.

Mutation (gene variation) - creates genetic variation/change in allele frequency, fueling evolution! NOTE: Silent mutations have no effect on resulting proteins!

Migration (gene flow) - When a group of individuals migrates into or out of a population resulting in both groups allele frequency changing.

Genetic Drift - Change in allele frequency purely due to chance. More pronounced in smaller populations.
> Founder’s Effect - new population is dominated by genetic makeup of founding members.
> Bottleneck Effect - new population dominated by genetic makeup of surviving members.

28
Q

Describe the process of speciation

A

Speciation is the splitting of one species into two or more species. This occurs when there is reproductive isolation and genetic divergence.

29
Q

How do we define species in different ways?

A

morphological concept - compare physical characteristics

phylogenetic concept - compare molecular characteristics

biological concept - compare ability to reproduce viable offspring (most popular)

30
Q

How can reproductive isolation occur?

A

Can occur before (prevent fertilization) and after (precent viable/fertile offspring) zygote existence.

prezygotic - ecological, temporal, behavioral, gametic

postzygotic - hybrid inviability, hybrid infertility

31
Q

What are the different lines of evidence for evolution?

Watch: PBS What Darwin Never Knew

A

Fossil Record - Offers physical evidence of past life, transitional forms that link todays species with common ancestors. But it is incomplete b/c only favored organisms with1 hard parts, population density, wide distribution and long history.

Biogeography - Distribution of species across planet. Related organisms originated in one place then spread to other places and adapted to new environment (ex: marsupials & placentals).

Comparative Anatomy - Unique organisms that share common anatomical structures from common ancestors
> Homologous structures: structurally and functionally similar body parts reflect shared ancestry
> Analogous structures: similar in function but structurally different reflect no shared ancestry (ex: wings of insects/bats/birds). These structures evolved due to similar environmental selective pressures (CONVERGENT EVOLUTION).

Molecular Data - All species use the same genetic code and 20 amino acids, most likely inherited from a common ancestor.

32
Q

What are vestigial traits and how do they illustrate that evolution is not perfect?

A

Traits that are no longer needed but still present b/c of lack of selective pressure to get rid of. If evolution were perfect every trait would have a function in overall survival of organism.

33
Q

Why are science and religion not dichotomous (mutually-exclusive)?

A

Science and religion answer different questions. Science attempts to explain the natural world and how it works. Religion attempts to answer the why and the metaphysical aspects of the world we live in. As a result, they can coexist.

34
Q

Describe the basic structure of a virus

A

Plasma membrane on the outside and a capsid container made of protein inside that holds the RNA or DNA.

35
Q

Why are viruses not considered alive?

A
  1. They cannot reproduce on their own.
  2. They do not respond to stimuli
  3. They do not metabolize
  4. They probably do not share a common ancestor
36
Q

How do viruses replicate?

A
  1. They bind to a host cell membrane and inject DNA
  2. Viral DNA uses host cell resources to replicate
  3. Viral DNA transcribed into mRNA
  4. Viral proteins are created using host cell resources
  5. The new viral DNA and proteins assemble into new viruses and leave cell
37
Q

How to read and construct a phylogeny?

A

Read from bottom up, the past is always at the bottom and present at the top. Common ancestors are always at below the descendants (tips). Each node represents a speciation event. Each descendant has unique history (lineage) after speciation event, but shared history (lineage) prior. If a descendant is not at the top of the chart, it means it went extinct.

38
Q

How do unicellular organisms increase genetic diversity in a population?

A

Unicellular organisms such as bacteria increase genetic diversity through horizontal gene transfer, viruses and absorption from the environment.

39
Q

Why is it important to take the entire prescribed course of antibiotics?

A

The bad bacteria must be reduced to a point where it can be outcompeted by the good bacteria. If enough of the bad bacteria are left, they represent the most resistant strain and will reproduce, passing on the trait and rendering the antibiotic ineffective.

40
Q

Explain what probiotic therapy is

A

To inundate your body with benign/helpful bacteria, outnumbering the bad bacteria. This is less stressful than antibiotic regiments.

41
Q

What are the similarities and differences between bacteria and archaeans?

A

Similar - Appearance, unicellular and prokaryotic
Diff - DNA, cell wall and flagella

Archaeans also exist in some of the most extreme environments on earth (pH, temperature, etc.)

42
Q

Describe the basic characteristics of archaeans

A

Archeans are similar to bacteria ecologically, but differ genetically and molecularly. They occupy their own kingdom and are found almost everywhere. They are very well adapted to thrive in extreme conditions.

43
Q

Describe the protist taxonomy and how they are classified

A

Protists are an extremely diverse kingdom. Pretty much any eukaryote that isn’t a plant, animal or fungi can be classified as a protist. There are three main types of protists:

Plant-like protists are the ancestors of land plants, live in water and can photosynthesize. They are either uni- or multi-cellular (ex: algae).

Fungus-like protists are similar to fungi but lack chitin in their cell walls. They also exhibit rudimentary intelligence (ex: slime molds).

Animal-like protists are mostly unicellular and are most commonly associated with various diseases such as malaria and chagas disease.

44
Q

How are fungi similar yet different from plants?

A

Fungi and plants are similar in that they are both mutli-cellular (for the most part), are stationary, and can reproduce both asexually and sexually. Fungi differ in that they lack chlorophyl and have root-like filaments that secrete enzymes to break down organic matter and then absorb it. This makes them decomposers/heterotrophs.

45
Q

What are some examples of fungi presented in lecture?

A

Yeasts - unicellular; useful for making bread and alcohol and in genetic research

Chytrids - swimming spores, famously know for killing off amphibious populations

Mycorrhizae - Fuse with plant roots to absorb nutrients for plant, which in turn feeds it sugar.

46
Q

How have plants adapted to life on land? What structures have made that possible?

A

Plants have developed features to resist drying out, absorb water and nutrients, support standing up and reproduce without water.

47
Q

What are the 4 major evolutionary advances in plants?

A

embryonic protection - multicellular embryo in female part

vascular tissue - xylem: transfers water and nutrients up; phloem: transfer sugars down

seeds - embryo stored w/ nutrients with protective outer shell

flowers and fruits - flowers are reproductive structures that turn into fruit. Fruit contains nutrients and seeds.

48
Q

Compare and contrast bryophytes, seedless vascular plants, gymnosperms, and angiosperms

A

bryophytes - simple and primitive, lack roots and vascular tissues. Heavily dependent on water for feeding (via diffusion) and reproduction. [EX: mosses]

seedless vascular plants - has vascular tissues (xylem and phloem) for feeding (from substrate) and support. Uses spores for reproduction. [EX: ferns]

Gymnosperms - have naked seeds and mostly cone-bearing. do not need water to reproduce, do not produce fruit or flowers. Very hardy and very successful. [EX: evergreens]

Angiosperms - produce flowers and fruits; need pollinators to reproduce; highly diverse, 6 times as many species as other plant species combined.

49
Q

Describe basic flower anatomy

A

sepal - leafy green shell that protects developing bud

petal - colorful leaves to attract pollinators

stamen - consists of anther (pollen production) and filament (support structure)

carpel - consists of stigma (pollen sticky point), style (support structure), and ovary (eggs)

50
Q

How do angiosperms use flowers to attract pollinators?

A

Flower features such as color, scent, time of opening, and petal size/shape can be used to attract pollinators.

51
Q

How do angiosperms use fruits to disperse their seeds?

A

They entice animals with the promise of a healthy, tasty snack in exchange for carrying the seed and depositing it in another location with fertilizer.

52
Q

How do growing forest plants gain access to light?

A

Vines use other plants as scaffolding to climb above canopy [EX: claws, sticky pads, tendrils]. Air plants have very absorbant roots that allow them to grow on top of tall trees [EX: bromelids and orchids].

53
Q

What is one strategy for gaining nutrients in nutrient-poor environments?

A

Carnivorous plants can trap insects, secrete enzymes to digest their bodies and harvest nitrogen [EX: venus fly trap, sun dew].

54
Q

What are some examples of how flowering plants attract pollinators?

A

Milkweeds, sunflowers and heliconia have nectar, petal colors that attract specific pollinators, and blooming times coinciding with pollinator activities

55
Q

What are some strategies plants use to disperse their seeds?

A

Hitching a ride - seeds have spines to attach to passing animals.

Flying and floating - Alsomitra seeds can have wings like gliders and are picked up easily by a passing breeze. Brunsviga dries out and then deposits seeds as plant head rolls along ground blown by wind.

Food source - Seeds can be contained in sweet fruit that is eaten by animals and later deposited elsewhere (EX: saguaro cacti)

56
Q

How does dragon’s blood tree deal with living in dry environment with little soil?

A

It’s shape is crucial to survival. The waxy leaves capture water from morning mists and funnel it to their roots. Their umbrella shape allows water droplets to be absorbed into the sand before they can evaporate.

57
Q

What is a codon?

A

A codon consists of three RNA bases.

58
Q

What are the four RNA bases?

A

Adenine, Cytosine, Guanine, Uracil

59
Q

Complete the following DNA-RNA complimentary base pairing:

A-?
G-?
C-?
T-?

A

A-U
G-C
C-G
T-A

60
Q

How does mutation affect proteins?

A

Mutations alter the genetic coding and therefore the resulting protein structure which could lead to protein dysfunction. Protein dysfunctions are often associated with disease. Some mutations are silent - they have no effect due to amino acid redundancy.

REMEMBER: MUTATIONS ARE ALWAYS RANDOM!!

61
Q

What are the three types of mutations?

A

Substitution - Entire base pair is replaced, affects only one protein.
Insertion - New base is inserted, shifts entire reading frame (codon). Potentially more harmful.
Deletion - Base is removed, shifts entire reading frame (codon). Potentially more harmful.

62
Q

What is a single gene disorder?

A

One single gene is mutated, resulting in protein product being changed or missing completely (EX: cystic fibrosis)

63
Q

What is a germline mutation?

A

Germline mutations are mutations that can be passed to offspring. This is of tremendous biological importance as natural selection acts on these new genes. The mutation must occur in gametes however.

Mutations occuring in somatic cells do not pass onto offspring.

64
Q

What is artificial selection?

A

Intentional, human-directed breeding to achieve certain characteristics.

65
Q

What are the characteristics of viral DNA/RNA?

A

Viral DNA/RNA can be both single and double-stranded