Midterm 2 Flashcards
What are Catabolic Pathways?
release energy by breaking down complex molecules into simpler compounds
What is Aerobic Respiration?
oxygen is consumed as a reactant along with organizing fuel
What is Anaerobic Respiration
organic fuel is broken down without oxygen
What is Fermentation?
partial breakdown of organic fuel (sugars) without oxygen
ex. beer
Briefly describe Cellular Respiration
-Aerobic respiration, the electrons stored in the fuel source bonds are transferred to oxygen
-some energy is produced is used to make ATP, rest is lost as heat
-cell regulates the use of energy over multiple steps in the catabolic pathway
-EXERGONIC!!
What do catabolic reactions depend on?
depend on the transferring of electrons during chemical reactions
-involve ‘redox’ reactions
What is ‘REDOX’?
the transfer of electrons from one molecule to another. ALWAYS COUPLED!!
What is a reducing agent?
molecule that gives up electrons and becomes oxidized (loses electrons)
What is the oxidizing agent?
molecule that receives electrons and becomes reduced (gains electrons)
How does electron transfer occur?
via an electron shuttle
What does NAD+ stand for and what is it?
nicotinamide adenine dinucleotide
-an electron transporter (shuttle)
-facilitates the electron over multiple steps in the breakdown of glucose
-its a coenzyme and oxidizing agent
-can cycle between oxidized (NAD+) and reduced (NADH) form
What type of way do electron move?
they move in a step-wise process (not all at once)
What would happen if the transfer of electrons was uncontrolled?
one big release of energy, with lot’s of heat loss
What would happen if the transfer of electrons was controlled?
-small releases of energy at each step, which can be used to make more ATP
-electrons get removed from glucose and are transferred to the electron transport chain via NADH
-The bonds that hold the electrons in the ETC are increasingly unequal for each step
Electrons in a H-H bond are shared how?
equally shared= high potential energy
Electrons in O-H bond are shared how?
very unequally shared= very low potential energy
In catabolism, ATP is made in two ways, what are they?
- Substrate-level Phosphorylation
- Oxidative Phosphorylation
Describe the first way ATP is made in Catabolism
- Substrate-level Phosphorylation
-an enzyme catalyzes the transfer of a phosphate group from a substrate to ADP, forming ATP
-The substrate is generated as an intermediate in the breakdown of glucose
-Direct transfer of energy to ATP
-Accounts for about 10% of ATP generation during cellular respiration
-Occurs in the cytosol AND mitochondria
Describe the second way ATP is made in Catabolism
- Oxidative Phosphorylation
-Energy dissipated from electrons in the ETC makes a H+ gradient
-Gradient is used to drive a protein complex called ATP synthase
-Indirect transfer of energy of ATP
-Maxes approx. 90% of ATP during cellular respiration
-Mitochondria ONLY!!
How many pyruvate does glycolysis form?
The 3-carbon sugars are oxidized and rearranged to form TWO PYRUVATES
What are the two phases glycolysis is split into?
- Energy Investment- the cell “spends” ATP
- Energy Payoff- ATP is produced via substrate-level phosphorylation
What is the OVERALL net gain of Glycolysis?
2 ATP and 2NADH
Is there any loss of carbon during Glycolysis?
NO, there is no loss of carbon as CO2
-all carbons are accounted for
Can Glycolysis occur withOUT oxygen?
YES, it can occur with OR without oxygen
-if oxygen is present, will proceed into the rest of aerobic respiration
How many steps are there in Glycolysis?
11
What is Glycolysis?
oxidizes glucose to pyruvate, which is later used in the citric cycle
Describe Step 1 of Glycolysis
Glucose is phosphorylated (intro of phosphate group) by ATP by hexokinase
- (makes it more chemically reactive)
- first investment of ATP
Describe Step 2 of Glycolysis
Glucose 6-phosphate is converted to fructose 6-phosphate by Phosphoglucoisomerase
Describe Step 3 of Glycolysis
Phosphofructokinase transfers another phosphate to the other end of fructose 6-phosphate, making Fructose 1,6 diphosphate
-second investment of ATP
Describe Step 4 of Glycolysis
Aldolase cuts the Fructose 1,6 diphosphate into TWO different 3-carbon sugars
1. dihydroxyacetone phosphate (DHAP)—> used in adipose cells to generate glycerol backbone
2. Glyceraldehyde 3-phosphate (G3P)—-> moves into the citric acid cycle
Describe Step 5 of Glycolysis
G3P and DHAP are converted back and forth (by isomerase) as they are produced (reaction NEVER reaches equilibrium since G3P is used up almost as fast as it is produced)
Describe Step 6 of Glycolysis
G3P is oxidized by transferring electrons to NAD+, forming NADH, and the energy from this EXERGONIC reaction is used to phosphorylate the oxidized substrate
-1,3 biphosphoglycerate is formed
Describe Step 7 of Glycolysis
The phosphate group is transferred to ADP in and EXERGONIC reaction (substrate level phosphorylation), leaving the carbonyl group of G3P oxidized to a carboxyl group (of 3-phosphoglycerate)
Describe Step 8 of Glycolysis
Phosphoglyceromutase (enzyme) relocates the remaining phosphate group
- 2-phosphoglycerate is formed
Describe Step 9 of Glycolysis
Enolase (enzyme) causes a double bond to form in the substrate by extracting a water molecule, which makes phosphoenolpyruvate (PEP)
-high energy potential
Describe Step 10 of Glycolysis
The phosphate group is transferred from PEP to ADP (substrate-level phosphorylation), forming pyruvate
-by pyruvate kinase
Describe Step 11 of Glycolysis
Pyruvate is transferred to the Citric Acid Cycle
After Glycolysis, where does pyruvate get transported to?
pyruvate is actively transported into the MITOCHINDRION
How many steps does it take to convert Pyruvate into acetyl CoA?
THREE steps
What is the first Step to convert Pyruvate to acetyl CoA?
- the oxidized carboxyl group on pyruvate is removed
-releases CO2, now a 2-carbon molecule
What is the second step to convert Pyruvate to acetyl CoA?
- The 2-carbon molecule is oxidized forming acetate (CH3COO-)
-extracted electrons are transferred to NAD+ forming NADH (stores energy)
What is the third step to convert pyruvate to acetyl CoA?
- Coenzyme A (CoA) attaches by its surfer group
-derived from vitamin B
-high potential energy
How many pyruvates does Glycolysis make?
TWO pyruvates
What is another name for the Citric Acid Cycle?
-Krebs Cycle
-Tricarboxylic cycle (TCA)
How many ATP molecules are formed over citric acid cycle? How is this done?
1 ATP molecule per cycle, therefore 2 are made
-via substrate-level phosphorylation
What is FAD?
Flavin Adenine Dinucleotide, from riboflavin
What is FADH2?
reduced form of NADH
What is FAD
oxidized form of NAD+
How many main steps are there in the Citric Acid Cycle?
8 main steps once acetyl CoA enters the cycle
Describe Step 1 of the Citric Acid Cycle
- Acetyl CoA (from oxidation of pyruvate) adds it’s 2-carbon acetyl group to oxaloacetate (4-carbons), producing citrate (6-carbons)
Describe Step 2 of the Citric Acid Cycle
Citrate is converted to its isomer, isocitrate (6-carbon), by dehydration (removal of water) but also the addition of water
-remove water, add water, to rearrange bonds
Describe Step 3 of the Citric Acid Cycle
- Isocitrate is oxidized (electron shuttle) reducing NAD+ to NADH. A CO2 molecule is lost (2nd time its removed in cycle). Results in alpha-ketoglutarate (5-carbons)
Describe Step 4 of the Citric Acid Cycle
- Another CO2 is lost (3rd time) resulting compound is oxidized, transferring electrons to NAD+ to form NADH
-remaining molecule bonds with coenzyme A, resulting in formation of Succinyl CoA (4-carbons) which have very unstable bonds
Describe Step 5 of the Citric Acid Cycle
- CoA group is displaced by a phosphate group which is transferred to GDP, forming GTP
-GTP can be used indirectly to produce ATP
-results in production of succinate (4-carbon)
Describe Step 6 of the Citric Acid Cycle
- 2 hydrogens are transferred to FAD, forming FADH2 and oxidizing succinate to result in fumarate
-FAD accepts 2 electrons and 2 protons to form FADH2
Describe Step 7 of the Citric Acid Cycle
- Addition of water rearranges the bonds, turning fumarate into malate
Describe Step 8 of the Citric Acid Cycle
- Malate is oxidized, reducing NAD+ to NADH, which forms oxaloacetate
What is the TOTAL yield per glucose?
6 NADH’s, 2FADH2’s, 2 ATP’s
What is the TOTAL amount of ATP formed from glycolysis AND citric acid cycle?
2 ATP from glycolysis
2 ATP from Citric Acid Cycle
What is the electron transport chain (ETC)?
a collection of protein complexes within the inner membrane of the mitochondrion
-sequential redox reactions
-each component becomes reduced when it accepts electron from its “uphill neighbour”, since its electronegativity is less than uphill
-transporters than return to the oxidized state and returns to the cycles to pick up more electrons