Midterm Flashcards
Biochemistry
The study of life at the molecular level, application of chem to organic processes
Elements of life
C H N O P S
Conceptual themes of biochem
Importance of water
Structure/function of proteins
enzyme regulation
kinetics
metabolic reactions, sequences and pathways
Major classes of Biomolecules
Sugars
Amino Acids
Fatty Acids
Nucleic Acids
Fatty Acids
Monocarboxylic
Saturated or unsturated
components of lipids
anabolism
requires energy
catabolism
production of energy (degrading macromolecule)
Metabolism
sum of chemical reactions happening in a living organism
6 Common reactions in biochemical processes
Substitution
addition
elimination
isomerization
redox
hydrolisys
How do cells obtain energy
oxidation of biomolecules
reaction in spontaneous when DG
negative
Properties of water
Cohesion/adhesion
polarity
high specific heat/ heat of Vap
Hydrogen bonding
electronegativity
nucleophilic
solvent
what is the Henderson Hasselback equation
pH = pKa + log [A]/[HA]
pH = -log[H+]
molarity of water
55.5M
what pH range is a buffer effective?
pKa +/- 1
what is a buffer composed of
weak acid and conjugate base pair
what shape is a titration curve
sigmoidal
some buffers in the body
blood plasma
saliva
stomach acid
liver cystol
mitochondrial matrix
shape of carbon molecules
tetrahedral
Carbon with 4 different sides is
chiral
mirror image
enantiomers
non-mirror immage
diasteromers
Chiral receptor
only has one binding specificity
drawing depicting molecules 3-dimensionally
fischer projection
amino acid
contains a carboxyl and amino group
building blocks of proteins
amino acid without chiral centre
glycine
ampholyte
act as acid or base
zwitterion
have both a positive and neg charge
intermediate molecule in titration of AA
most amino acids at neutral pH
average pKa of carboxyl group
2.19
average pKa of amino group
9.47
pI
Isoelectric point
pH of AA when majority of molecules have no net charge
=(pKa1 + pka2)/2
Amino Acid properties for classification
hydrophobicity
size
charge
secondary structure preference
alcoholicity
aromacticity
most important character of amino acid
hydrophobicity
Amino Acids with positive R
Arginine
Histidine
Lysine
Amino Acids with Neg charged R
Aspartic acid
glutamic acid
Amino Acids with polar uncharged R
Asparagine
Glutamine
Serine
Threonine
tyrosine
cysteine
Amino Acids with Hydrophobic side chains
Alanine
Phenylalanine
Isoleucine
Leucine
Methionine
Valine
Tryptophan
Tyrosine
Proline
Glycine