Microbiology - general and antibiotics Flashcards
Gram + cell membrane component
Lipoteichoic acid
2 unique features of Gram - bac cell wall
- Periplasm
2. Outer membrane
3 components of outer cell membrane of Gram - bacteria
Polysaccharide
Lipid A
O antigen
2 components of peptidoglycan sheets of bacterial cell wall
Which one connects peptides?
NAG
NAM (connects peptides)
Make up of capsule
Which bacteria is the exception?
Polysaccharide
Exception - Bacillus anthracis - poly D glutamate peptide capsule (major virulence factor)
3 conjugated vaccines with capsule polysaccharide
Strep pneumonia
H influenzae b
N meningitidis
Bacteria using glycocalyx
Staph epidermidis - forms biofilm
2 key bacteria using pili/fimbria
E. Coil Neisseria gonorrhoea (antigenic variation —> risk subsequent infection
3 components of bacteria spores
Keratin-like outer coating
Dipicolinic acid
Peptidoglycan cortex/core wall
2 main spore-forming groups of bacteria
Bacillus
Clostridium
Name the microbes that poorly Gram stain.
‘These Little Microbes May Unfortunately Lack Real Colour But Are Everywhere’ Treponema (too thin to visualise) Leptospirosis (too thin to visualise) Mycobacterium (high lipid content) Mycoplasma (lack cell wall) Ureaplasma (lack cell wall) Legionella (primarily intracellular) Rickettsia (primarily intracellular) Chlamydia (primarily intracellular; lacks muramic acid) Bartonella (primarily intracellular) Anaplasma (primarily intracellular) Ehrlichia (primarily intracellular)
Giemsa staining microbes (4)
‘Ricky got Chlamydia as he tried to Please the Bored Geisha’ Rickettsia Chlamydia Plasmodium Borrelia
Staining for Cryptococcus (2)
India ink
Mucicarmine (stains capsule red)
Chocolate agar
H influenzae
Thayer Martin agar
Neisseria gonorrhoea
Neisseria meningitidis
Bordet Gengou agar
Bordatella pertussis
Tellurite agar
C diphtheria
Loffler medium
C diphtheria
Lowenstein Jensen agar
M TB
Eaton agar
Mycoplasma
MacConkey agar
Lactose-fermenting enteric
Eosin-methylene blue (EMB) agar
E. Coil
Charcoal yeast extract agar buffered with cysteine and iron
Legionella
Sabouraud agar
Fungi
Silver stain (3)
PCP (fungi)
Legionella
H pylori
Most cocci are Gram +
Name 2 cocci that are Gram -
Neisseria meningitidis/gonorrhoea
Moraxella
Most rods are Gram -ve
Name the G+ rods (4)
Corynebacterium
Clostridium
Listeria
Bacillus
Branching/filamentous
Nocardia
Actinomyces
Sorbitol culture
Used to detect E.coli 0157 (colourless colonies instead of pink)
Facultative aerobes (3)
Staph
Strep
Enteric gram -
Obligate aerobes (3)
Pseudomonas
M TB
Nocardia
Key obligate intracellular organisms (2)
Rickettsia
Chlamydia
Facultative intracellular (8)
‘Some Nasty Bugs May Live FacultativeLY’ Salmonella Neisseria Brucella Mycobacterium Listeria Francisella Legionella Yersinia
Urease +ve organisms
‘Pee CHUNKSS’ Proteus Cryptococcus H pylori Ureaplasma Nocardia Klebsiella S epidermidis S saprophyticus
Predisposes to struvite stones
Catalase +ve organisms
‘Cats Need PLACESS to Belch their Hairballs’
E.g.s Nocardia Pseudomonas Listeria Aspergillus Candida E. coli Staph Serratia B cepacia H pylori
Name 3 key virulence factors.
Protein A
IgA protease
M protein
MOA protein A virulence factor.
Which bacteria?
Binds FC portion of IgG —> prevents opsonisation and phagocytosis
Staph aureus
MOA IgA protease.
Which bacteria?
Cleaves IgA —> adhere and colonise mucous membranes
SHiN bacteria
- S pneumonia
- H influenzae type b
- Neisseria
MOA M protein virulence factor
Expressed by which bacteria?
Helps prevent phagocytosis (binds factor H, break down of C3 convertase)
Gp A Strep
MOA diphtheria toxin
ADP ribosylation of EF-2 —> prevents protein synthesis
MOA exotoxin A of Pseudomonas
ADP ribosylation of EF-2 —> prevents protein synthesis
MOA Shiga toxin
Inactivated 60S ribosome by removing adenine residue from rRNA
MOA EHEC toxin
Inactivated 60S ribosome by removing adenine residue from rRNA
What causes the HUS with enterohaemorrhagic E. coli?
Shiga-like toxin enhances cytokines release.
MOA ETEC heat labile toxin
Overactivation adenyulate cyclise —> increases cAMP —> increased chloride secretion into gut
MOA EHEC heat stable toxin
Overactivates cGMP —> increased cGMP —> reduced resorption of NaCl and water in gut
MOA oedema toxin of Bacillus anthracis
Mimics adenylate cyclase —> increased cAMP
MOA Vibrio cholera’s toxin
Activates Gs —> increased cAMP —> increased chloride secretion into gut
Voluminous ‘rice water’ diarrhoea
MOA Pertussis toxin
Disables Gi —> increased cAMP —> impaired phagocytosis
MOA tetanospasmin
Cleaves SNARE (soluble NSF attachment protein receptor; required for neurotransmitter release via vesicular fusion) —> prevent release of inhibitory GABA and glycine from Renshaw cells —> spastic paralysis
MOA Boutlinum toxin
Cleaves SNARE (soluble NSF attachment protein receptor; required for neurotransmitter release via vesicular fusion) —> prevents release stimulators (ACh) signals at NMJ —> flaccid paralysis
MOA of alpha toxin (Clostridium perfringens)
Phospholipase (lecithinase) —> degrades tissue and cell membranes
Myonecrosis and double zone haemolysis on blood agar
MOA Strep pyogenes Streptolysin O
Degradation cell membrane
RBC lysis, contribute to beta haemolysis
MOA TSST-1 of Staph aureus and erythrogenic exotoxin A of Strep pyogenes
Cross-links beta region TCR to MHCII outside of antigen binding site —> overwhelming release IL-1, IL-2, IFN-gamma, TNF-alpha
3 main effects LPS of outer membrane of Gram -
- Macrophage activation (TLR4/CD14)
- Complement activation
- Tissue factor activation
Bacterial transformation
Uptake of DNA from surrounding environment
What prevents bacterial transformation?
Add deoxyribonuclease (degrades naked DNA)
Bacteria using bacterial transformation (3)
‘SHiN’
S pneumonia
H influenza type b
Neisseria
Bacterial conjugation
DNA t/f of plasmids via sex pili
High frequency strains in bacterial conjugation
Allow gene mapping
Bacterial transduction
Transfer of DNA via bacteriophage
What are the two types of bacterial transduction?
- Generalised (lytic phage)
- virus infects bacteria and multiplies randomly picking up host DNA —> transfer to another bacteria - Specialised (lysogenic phage)
- virus DNA inserts into host DNA, some host DNA then excised with phage DNA
Name the bacteria whose toxins are formed from lysogenic phages.
‘ABCDS’
Group A erythrogenic toxin Botulinum toxin Cholera toxin Diphtheria toxin Shiga toxin
What is the term given to phages only replicating in the lytic cycle?
Virulent
What is the term given to phages replicating in both the lytic and lysogenic forms?
Temperate
Bacterial transposition
Give an example.
Transposons excised and re-integrated in new locations
Mechanism of abx resistance
E.g. Tal456 with vanA gene from VRE —> Staph aureus
What do penicillin binding proteins do?
Cross link alanine residues in bacterial cell wall
MOA penicillins
Mimic alanine residues (D-ala-D-ala) —> breakdown >creation of cell wall —> autolysis —> cell death
Therefore bacteriocidal
Name 2 natural penicillins
Penicillin G
Penicillin VK
Which drug increases the concentration of pen G/VK when co-administered?
Probenecid (usually used in gout)
Name 3 mechanisms by which bacteria develop resistance to penicillins.
- Modify PBPs e.g. Strep pneumonia
- Reduced bacterial cell penetration (G- outer cell membrane has poor penetration; reduced porins)
- Beta lactamase enzymes
Which bacteria produce beta-lactamase enzymes? (2)
- Gram negative (present in periplasm)
2. Staph aureus (no periplasm therefore secretes)
Name 3 inhibitors of beta lactamase.
- Clavaulanic acid
- Sulbactam
- Tazobactam
How many hours after administration of penicillin does the Jarisch-Herxheimer reaction occur?
2 hours
Name examples for each hypersensitivity reaction in penicillin.
(Similar for cephalosporins)
Type 1 - acute (IgE) anaphylaxis
Type 2 - haemolysis (IgG)
Type 3 - serum sickness (IgG)
Type 4 - skin reaction, interstitial nephritis
What type of T cell mediates the SJS and TEN reactions that you see with penicillin use?
CD8
With which abx can you see SJS/TEN?
Aminopenicillins
TMP-SMX
Cephalosporins