Microbiology Flashcards

1
Q

Which 3 fungi are most likely to pose a threat/be able to infect humans?

A
  • Candida species
  • Aspergillus
  • Cryptococcus species
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2
Q

What patients are at particular risk to fungal infections?

A

o immunocompromised due to fungi mauinly being opportunistic pathogens

  • HIV patients are more likely to suffer from cryptococcus infections due to a lack of CD4 cells -> fungal meningitis
  • pneumocystis pneumonia (PCP) caused by Pneumocystis jirovecii is associated with AIDS

o high risk patients have prolonged and profound neutropenia after treatment with highly cytotoxic chemotherapy for haematological malignancies and recipients of haematopoietic stem cell transplantation (HSCT)

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3
Q

How are dendritic cells and fungal infections linked?

A
  • dendritic cells have an instrumental role in linking innate and adaptive responses to a range of pathogenic fungi
  • signals transmitted by dendritic cells activated by exposure to fungi vary depending on the encountered fungus and its morphotype, helping to shape the appropriate adaptive immune response
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4
Q

What is the predominate protective mechanism to fungal infection?

A
  • Th1 type CD4+ T cells
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5
Q

What cytokine is important in the Th1 type CD4+ T cell response to fungi?

A
  • interferon-γ
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6
Q

Summarise cellular immunity to fungal infection.

A
  • opsonisation by pentraxin 3 and mannose-binding lectin
  • phagocytes are a critical first line of defence -> NK cells provide early interferon-gamma
  • failure of innate immunity leads to adaptive responses -> dendritic cells influence T cell differentiation (Th1 and Th17 play a role)

o INNATE IMMUNITY IS MORE IMPORTANT THAT ADAPTIVE in fungal infection rather than the adaptive immunity -> loss of neutrophils is a big risk factor for infection

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7
Q

Where are most fungal infections found?

A

o mucosal surfaces

  • mould (contains multicellular filaments) = lungs -> candida and aspergillus
  • yeasts (single cells) = gut -> cryptococcus -> forms a capsule to evade phagocytosis
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8
Q

What receptors are important in sensing fungal components?

A
  • toll like receptors
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9
Q

Name some human susceptibilities to fungi.

A
  • human dectin-1 deficiency
  • human CARD9 deficiency
  • TLR4 mutations/polymorphisms
  • some plasminogen alleles
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10
Q

How does human dectin-1 deficiency increase the risk of fungal infection?

A
  • human dectin-1 is important in the phagocytosis of candida -> HD1 is important for immunity to chronic mucocutaneous candidiasis -> very unpleasant disease that leads to massive hypertrophy of the mucosa and many problems with fungal drug resistance
  • loss of function in HD1 -> Mendelian susceptibility to chronic mucocutaneous candidiasis -> patients with the homozygous mutation have a reduced inflammatory response via IL-6
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11
Q

How does human CARD9 deficiency increase the risk of fungal infections?

A
  • human CARD9 deficiency causes chronic mucocutaneous candidiasis
  • CARD9 is an adaptor molecule downstream of the C-type lectins
  • suffers are susceptible to mucosal and invasive infection (including CNS fungal disease)
  • functional CARD9 is required for TNF-alpha production in response to beta-glucan stimulation and T cell Th17 differentiation in humans -> if deficient they can’t respond to fungi
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12
Q

When are patients with TLR4 mutations/polymorphism particularly vunerable to fungal infection?

A
  • stem cell transplant patients -> are at high risk of candida and aspergillosis due to reduce immune system
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13
Q

Which white blood cell is the most important in the defence against fungi?

A
  • neutrophils
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14
Q

Describe neutrophil nets.

A
  • neutrophils can form neutrophil nets -> are extracellular fibres mainly comprised of DNA from the neutrophils which can bind to extracellulr pathogens and prevent them from replicating -> reduces damage to host cells
  • the net is sticky -> reason for sputum being sticky during chest infection
  • deficiency to create these increases infection risk
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15
Q

What is chronic granulomatous disease?

A
  • sufferers have a loss of gp91 function (mutation) due to a defects in the enzyme NADPH oxidase -> NADPH oxidase is important for the generation of reactive oxidative species -> their neutrophils are unable to kill ingested pathogens
  • patients are susceptible to invasive fungal infections, particularly with Aspergillus species
  • confirms the crucial role of neutrophils in defence against fungal infections
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16
Q

What treatments are available for ghronic granulomatous disease?

A
  • gene therapy can allow some restoration of function of the gp91 (FOX91)
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17
Q

What do many fungal spores cause?

A
  • allergic disease -> rhinitis, dermatitis, asthma and ABPA
  • spores can easily disperse and enter teh lungs hence the reasoning for them causing lung problems
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18
Q

What is ABPA?

A
  • allergic broncho-pulmonary aspergillosis
  • is a condition associated with asthma
  • involves an allergy to aspergillus and destruction of the airways -> bronchiectasis -> airway gets wider -> more prone to infections
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19
Q

What is the criteria for ABPA?

A

o patient has a predisposing condition -> asthma or cystic fibrosis

o obligatory criteria -> total baseline serum IgE > 1000 IU/ml and a positive immediate hypersensitivity skin test or Aspergillus-specific IgE

o 2 or more of the supportive criteria:

  • eosinophilia > 500 cells/ul
  • serum precipitating or IgG antibodies to aspergillus fumigatus
  • consistent radiographic abnormalities -> dilated bronchi with thick walls, ring or linear opacities, upper or central region predilection, proximal bronchiectasis, lobar collapse due to mucous impaction, fibrotic scarring
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20
Q

How is ABPA managed?

A
  • corticosteroids and itraconazole for steroid sparing effect
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21
Q

What is hypersensitivity pneumonitis?

A
  • an allergic response requiring long-term allergen exposure (as a consequence, often occupational)
  • cell-mediated delayed sensitivity reaction and allergen-specific precipitins usually present
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22
Q

What is the role of the IRF-7 gene?

A

o a key player in the interferon induction pathway

  • can inherit two copies of a faulty IRF-7 gene -> gene product doesn’t work very well -> people therefore cannot produce interferon alpha in response to infection
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23
Q

What is the role of IFNAR2 gene?

A

o an interferon alpha receptor

  • if you inherit 2 recessive defective/mutated IFNAR2 genes -> often due to deletion out of frame leading to a premature stop codon
  • can’t respond to interferons produced in an infection
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24
Q

What should not be given to patients with autonomal recessive IFNAR2 gene mutated patients?

A
  • live attenuated vaccines -> virus can manifest in the body and can kill these patients
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25
Q

What is the role of the IRF-3 gene?

A
  • part of the interferon signalling pathway
  • patients suffering from heterozygous mutations in this gene don’t respond well to viruses as they cannot produce interferon responses
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26
Q

What are interferons?

A
  • a soluble protein factor that binds to receptors adn signals the activation of de novo transcritption of 100s of interferon stimulated genes (ISGs) that produce an anti-vrial state in cells -> cells can’t be infected by a virus
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27
Q

Why are interferons not used as a anti-viral, especially for illness such as the common cold?

A
  • have many side effects -> all the aches, pain and fever that you have when ill with a virus
  • taking interferons for most viral infections would make you feel more ill than you originally did
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28
Q

What are the 3 major functions of type I interferons?

A
  • induce an anti-microbial state in both the infected and neighbouring cells
  • modulate the innate response to promote Ag presentation and NK but inhibit pro-inflammation
  • activate the adaptive immune response
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29
Q

What cell types produce type I interferons and what are their consequences?

A
  • IFN-alpha = plasmacytoid dendritic cells -> recruits APCs and adaptive immune cells
  • IFN-beta = all cells -> diffuse and interacts with neighbouring cells -> leads to switching on of ISGs in those cells too
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30
Q

Describe type II IFN.

A
  • type II IFN is IFN-gamma which is a highly specialised immune signalling molecule produced by immune cells activated by T and NK cells
  • signals through the IFN-gamma receptor
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31
Q

Describe type III IFN.

A
  • type III INF is IFN-lambda
  • thought to protect barriers of your body from viral infection -> present mainly on epithelial surfaces as a consequence -> especially found on the respiratory tract and liver
  • signal through IL28 and IL10-beta receptors
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32
Q

How do we differentiate between self and non-self in the case of viruses?

A
  • a virus cannot hide its nuclei acid

o PAMPS (pathogen associated molecular patterns) are unique to pathogens -> often foreign nucleic acid

o PAMPS are recognised by PRPs (pattern recognition receptors)

  • PRPS can be RLRs (cytoplasmic RIG-I like receptors) or TLRs (endosomal Toll like receptors)

o cytoplasmic nucleotide oligomerisation domain receptors (NLRs) also exist

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33
Q

Describe interferon induction.

A
  • PRRs (e.g. RIG-I like receptors) detect PAMPs such as single stranded RNA in the cytoplasm of the cell
  • RIG-I will then signal through Mavs (located on the mitochondrion)
  • this triggers signalling through various different pathways that result in the translocation of molecules from the cytoplasm to the nucleus
  • transcription factors will become phosphorylated, they will bind to the promoter regions of target genes (in this case IFN beta). It will generate IFN beta transcripts
  • IFN beta is then released from these cells and travels to neighbouring cells to induce an anti-viral state -> way we/the host controls the amount of virus in the body
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34
Q

How do TLRs and cytoplasmic sensors detect viral infection?

A
  • TLRs can sense the nucleic acids in the endosome and it will signal to a molecule outside the endosome (MyD88) -> sends various transcription factors to the nucleus of the cell -> results in the switching on of expression of IFN-alpha
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35
Q

How are DNA viruses detected?

A
  • in a normal, healthy cell, ALL the DNA should be in the nucleus
  • DNa in the cytoplasma is detected by cGAS (an enzyme) whichs binds the DNA, and synthesises another small molecule (cGAMP), which binds to a STING molecule
  • STING uses the same pathway as IRF-3 -> moves into the nucleus to transcribe some new IFN molecules
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36
Q

How do IFN contain viruses to a small area?

A
  • IFN binds to the IFN receptor on neighbouring cell (present on every cell in the body) -> this activates the Jak and Tyk pathway
  • then goes on to phosphorylate the STAT molecules -> STAT molecules dimerise and combine with IRF9 -> then goes to the nucleus and binds to a promoter region that is responsive to that TF -> cell becomes a very hostile place for a virus so it can’t move
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37
Q

Name some interferon stimulated genes.

A
  • PKR Protein Kinase R -> inhibits translation
  • 2’5’OAS -> activates RNAse L that destroys single stranded RNA including mRNA
  • Mx -> inhibits incoming viral genomes -> wraps around viruses to prevent cell entry
  • ADAR -> induces errors during viral replication (attacks the virus as it’s replicating)
  • IFITM3 -> restricts virus entry through endosomes
  • serpine -> activates proteases which digest viral proteins
  • viperin -> inhibits viral budding
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38
Q

WHat viruses are prevented from replicating by Mx genes?

A
  • Mx1 = influenza, rabdoviruses -> traps the viral DNA as they release their nucleic acid
  • Mx2 = HIV -> upregulation of Mx2 prevents HIV from injecting its RNA genome into cell nucleus
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39
Q

How long do an anti-viral state triggered by interferons last in cells?

A
  • IFN response may only be maintained for several hours (maybe a day) -> subsequently the ability to response to IFN is lost due to negative regulation
  • negative feedback controls to turn off the IFN response as well as SOCS (suppressor of cytokine signalling) genes that turn off the response
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40
Q

How have viruses evolved to evade IFN responses?

A
  • avoid detection by hiding the PAMP -> some create a membrane which they replicate within
  • interfere globally with host cell gene expression and/or protein synthesis
  • block IFN induction cascades by destroying or binding
  • inhibit IFN signalling
  • block the action of individual IFN induced antiviral enzymes
  • activate SOCS
  • replication strategy that is insensitive to IFN
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41
Q

How does hepatitis C virus prevent IFN control?

A
  • produces NS3/4 protease which acts as an antagonist to interferon induction by cleaving MAVS
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42
Q

How does influenza virus prevent IFN control?

A
  • produces NS1 protein which acts as antagonist to interferon induction by binding to RIG-I /TRIM25/RNA complex and preventing activation of signalling pathway and also prevents nuclear processing of newly induced genes
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43
Q

How do Pox viruses prevent IFN signals?

A
  • pox viruses (and herpes) viruses are large DNA viruses -> over half the pox virus genome is comprised of accessory genes that modify immune response
  • pox viruses encode soluble cytokine receptors (vaccinia virus B18), which mop up IFN -> IFN cannot interact with receptor
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44
Q

What is the potential clinical use for viruse endoced soluble cytokine receptors such as vaccinia virus B18?

A
  • being developed as possible immune therapies for autoimmune and inflammatory conditions in which IFN and other cytokines are produced in abundance and contribute to the pathology of the condition
  • e.g. rheumatoid arthritis
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45
Q

How does ebola virus evade the immune mechanisms?

A
  • RIG-I and Mda-5 sense the ebola virus
  • VP35 is a protein produced by ebola that BLOCKS the signalling cascade
  • VP24 is another protein produced by ebola that blocks the signal from the IFN receptor into the nucleus -> no ISGs can be transcribed
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46
Q

How can viruses produce cytokine storms?

A
  • virus replicates and induces high levels of IFN accompanied by massive release of TNF alpha and other cytokines -> differences in outcome may reflect vigour of the innate immune system, which varies with age
  • typical of dengue haemorrhagic fever, severe influenza infections and ebola
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47
Q

What are the consequences of cytokine storms?

A
  • cytokine storm will lead to pulmonary fibrosis, which is caused by the accumulation of immune cells in the lung spaces
  • eventually the patient will succumb to the immune pathology rather than from damage from the virus
  • young, healthy people infected by these viruses have a worse prognosis because they have vigorous immune system which will produce a strong response
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48
Q

What kind of viruses could be used as a new generation of live attenuated vaccines?

A
  • viruses deficient in control of IFN are attenuated in IFN competent cells -> means that they induce high levels of interferon when they enter these cells
  • high IFN levels they induce can also recruit useful immune cells, IFN acting as an ‘adjuvant’ -> IFN levels strongly switch on the antiviral response
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49
Q

How could viruses be used as a cancer treatment?

A
  • cancer cells don’t make a very good IFN response could lead us to the generation of rationally designed oncolytic viruses
  • giving a cancer patients a virus defective to fight the IFN response throughout the body -> therefore only replicates in and kills the cancer cells. and all the healthy cells in a person’s body (have a perfectly good IFN) will not be killed
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50
Q

Name some common virulence factors associated with bacterial infections.

A
  • diverse secretion systems -> allows them to get proteins from the cytoplasm of the cells into host cells
  • flagella
  • pili -> important adherence factors
  • capsule -> protects against phagocytosis -> i.e. Streptococcus pneumoniae
  • endospores -> metabolically dormant forms of bacteria -> I.e. Bacillus sp. and Clostridium sp.
  • biofilms -> organized aggregates of bacteria embedded in polysaccharide matrix which can lead to antibiotic resistant -> i.e. Pseudomonas aeruginosa and Staphylococcus epidermidis
  • exotoxins and endotoxins
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51
Q

Describe the different types of exotoxins.

A
  • neurotoxins -> act on nerves or motor endplate -> i.e. Tetanus or Botulinum toxins
  • enterotoxins -> act on the GI tract -> infectious diarrhea i.e. Vibrio cholera, Escherichia coli, Shigella dysenteriae and Campylobacter or food poisoning i.e. Bacillus cereus or Staphylcoccus aureus
  • pyrogenic exotoxins -> stimulate release of cytokines -> i.e. Staphylcoccus aureus or Streptococcus pyogenes
  • tissue invasive exotoxin -> allow bacteria to destroy and tunnel through tissue ->
    i. e. Staphylococcus aureus, Streptococcus pyogenes, Clostridium perfringens
  • miscellaneous exotoxin -> specific to a certain bacterium and/or function not well understood -> i.e. Bacillus anthracis and Corynebacterium diphtheriae
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52
Q

Describe endotoxins.

A
  • endotoxins are only produced by gram-negative bacteria
  • are a lipid A moiety of the lipopolysaccharide layer -> are shed in steady amounts from living bacteria
  • due to endotoxins treating a patient who has a gram-negative infection with antibiotics can sometimes worsen condition because when bacteria lyse they release large quantities of LPS/endotoxin -> septic shock
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53
Q

Define outbreak.

A
  • a greater-than-normal or greater-than-expected number of individuals infected or diagnosed with a particular infection in a given period of time, or a particular place, or both
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54
Q

How can outbreaks be identified?

A
  • surveillance -> provides an opportunity to identify outbreaks
  • good and timely reporting systems are instrumental in idenitifcation
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55
Q

What is haemoltyic-uremic syndrome?

A
  • characterised by a triad of acute renal failure, hemolytic anemia and thrombocytopenia
  • usually found in children -> very rare in adults
  • caused by the Shiga toxin producing E. coli strain O157:H7
  • reservoir are normally ruminants – mostly cattle
  • human infection occurs through the inadvertent ingestion of fecal matter and secondary through contact with infected humans
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56
Q

How does Shiga/vero toxin function?

A
  • StxA (a subunit found in SHiga toxin family members) is an enzyme that cleaves the 28S ribosomal RNA in eukaryotic cells -> inhibition of protein synthesis -> decreased proliferation of susceptible bacteria -> can affect commensal gut microflora
  • Shiga toxin does not only block protein synthesis in eukaryotic cells but also affects several other cellular processes
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57
Q

Can Shiga toxins move from bacteria to bacteria?

A

o yes

  • Shiga toxins are encoded on a bacteriophage -> can be transferred from one strain to another via a phage
  • phage particles enter the environment, and infect a closely related strain to produce the toxin
  • highly mobile genetic elements and contributes to horizontal gene transfer
  • toxins are highly expressed when the lytic cycle of the phage is activated
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58
Q

Where can E. coli strains colonize?

A
  • EHEC = large bowel
  • EAEC = both small and large bowel
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59
Q

What are the 6 categories of communicable disease in Europe?

A
  1. respiratory tract infections
  2. sexually transmitted infections, blood-borne viruses
  3. food and waterborne diseases and zoonoses
  4. emerging and vector-borne diseases
  5. vaccine-preventable diseases
  6. anti-microbial resistance and healthcare-associated infections
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60
Q

What respiratory tract infections must be reported in Europe?

A
  • influenza - viral
  • animal influenzas -> including avian and swine - viral
  • SARS (severe acute respiratory syndrome) - viral
  • Legionnaires’ disease -> Legionella pneumophila - gram -ve bacteria
  • tuberculosis -> Mycobacterium tuberculosis - gram +ve bacteria
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61
Q

Where is Leigonella pneumophila found?

A
  • gram negative bacterium is found in amoeba in ponds, lakes and air conditioning units
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62
Q

What is Leigonella pneumophila route of infection to humans?

A
  • inhalation of contaminated aerosols -> will infect and grow in alveolar macrophages
  • human infection is “dead end” for the bacteria/bacteria can’t survive here on
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63
Q

Describe the importanr virullent factor of Legionella pneumophila.

A

o type IV secretion system

  • allows L. pneumophila to infect and replicate in human macrophages by allowing the bacterium to secrete from inside to the outside
  • macrophages take up these bacteria in humans and are able to replicate in macrophage vacuoles, because it can release special virulence factors (due to the type IV secretion system)
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64
Q

Describe mycobacterium tuberculosis.

A
  • grouped as a gram-positive bacteria, but it has a very different cell wall -> has an extra lipid layer which makes treatment more difficult as drugs cannot access the bacteria
  • is treated with antibiotics, but this takes AT LEAST 6 months and success rate of treatment for second infection is lower
  • M. tuberculosis can enter a dormant state -> latent TB = evidence of infection by immunological tests but no clinical signs/symptoms of active disease
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65
Q

What sexually transmitted diseases must be reported in Europe if there is an outbreak?

A
  • Chlamydia trachomatis infection - gram -ve
  • gonorrhoea -> Neisseria gonorrhoeae - gram -ve
  • syphilis -> Treponema pallidum - gram -ve
  • Hepatitis B and C - viral
  • HIV/AIDS - viral
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66
Q

Describe Chlamydia trachomatis.

A
  • obligate intracellular pathogen -> cannot culture it outside host cell
  • most frequent STI in Europe with around 350.000 cases/year (infection likely higher due to underreporting)
  • can cause eye infections -> 84 million people infected and 8 million visually impaired -> responsible for more than 3% of the world’s blindness
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67
Q

How does Neisseria gonorrhoeae establish infection?

A
  • establishes infection in the urogenital tract by interacting with non-ciliated epithelial cells
  • important virulence factors and traits are pilli and antigenic variation as well as being able to escape detection and clearance by the immune system
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68
Q

Name the 3 most common food and waterborne bacterial disease in Europe and the most common globally.

A

o campylobacteriosis -> Campylobacter sp., mostly C. Jejunio

o salmonellosis -> Salmonella sp.

o cholera -> Vibrio cholerae

  • listeriosis -> Listeria monocytogenes
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69
Q

Describe campylobacter sp..

A
  • most commonly reported infectious GI disease in the EU -> you have to consume the live organism -> infection is most likely through undercooked poultry
  • usually sporadic cases and not outbreaks
  • small children of 0-4 years are the highest risk group
  • virulence factor -> adhesion and invasion factors, flagella motility, type IV secretion system and toxins
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70
Q

Describe salmonella sp..

A
  • one of the most common GI infections in the EU -> mainly due to undercooked poultry
  • otbreaks are seen
  • highest infection rate in small children (0-4 years)
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71
Q

What is the virulence of salmonella sp.?

A

o type III secretion systems encoded on pathogenicity islands (SPI)

o salmonella enterica has type III secretion system

  • SPI1 -> required for invasion
  • SPI2 -> intracellular accumulation
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72
Q

Describe vibrio cholerae.

A
  • cholera is an acute, severe diarrheal disease -> without prompt rehydration, death can occur within hours of the onset of symptoms
  • last outbreak was in Haiti, and has caused many deaths
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73
Q

What are the important virulence factors of vibrio cholerae?

A
  • type IV fimbria
  • cholera toxin carried on a phages -> makes eukaryotic cells produce high levels of cyclic AMP (cAMP) -> activates a transporter, resulting in chloride ions EFFLUX from the cell -> water and sodium leaves the cell -> DIARRHOEA -> people die from the dehydration
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74
Q

Describe Listeria monocytogenes.

A
  • risk groups are the immunocompromised, elderly, pregnant women and their foetus
  • listeria can enter non-phagocytic cells and cross three tight barriers due to its motility -> intestinal barrier, BBB and materno/foetal barrier
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75
Q

State some of the emerging and vector-borne diseases whihc must be reported in Europe.

A
  • malaria - parasite
  • plague -> Yersinia pestis - gram negative -> not a problem anymore really
  • SARS - viral
  • yellow fever - viral
  • Q fever -> Coxiella burnetti - gram negative
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76
Q

What vaccine prevntable diseases outbreaks must be reported in Europe?

A
  • diphtheria -> Clostridium diphtheria- gram positive
  • invasive Haemophilus influenzae disease - gram negative
  • invasive meningococcal disease -> Neisseria meningitidis - gram negative
  • invasive pneumococcal disease (IPD) -> Streptococcus pneumoniae - gram positive
  • pertussis -> Bordetella pertussis - gram negative
  • Measles, Mumps and Rubella - viral
  • polio - viral
  • rabies - viral
  • tetanus -> Clostridium tetani - gram positive
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77
Q

What bacteria are the major causes of hospital/healthcare acquired infections?

A

o Enterococcus faecium -> vancomycin resistance

o Staphylococcus aureus -> methicillin resistant (MRSA)

o Clostridium difficile -> can establish infection due to previous antibiotic treatment

o Acinetobacter baumanii -> highly drug resistant

o Pseudomonas aeruginosa -> multi drug resistant

o Enterobacteriaceae -> pathogenic E. coli (multi drug resistant), Klebsiella pneumoniae (multi drug resistant), Enterobacter species (multi drug resistant) etc

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78
Q

Describe pathogenic E. coli.

A
  • most frequent cause of bacteraemia by a gram-negative bacterium
  • most frequent cause of community and hospital acquired UTI
  • increase in multi-drug resistant strains -> resistance to 3rd generation cephalosporsins as high as 20% in some countries and most isolates that are resistance to cephalosporin express the extended spectrum beta lactamase
  • still sensitive to carbapenems
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79
Q

Describe cephalosporins.

A
  • class of beta-lactam antibiotics -> e.g. penicillin
  • target pathway = inhibition of peptidoglycan synthesis
  • target protein = inhibit the activity of penicillin binding proteins (PBPs)
  • resistance to cephalosporins arises from extended spectrum beta lactamases encoded on a plasmid -> cleave the cephalosporin antibiotic
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80
Q

Describe carbapenems.

A
  • class of beta-lactam antibiotics
  • target pathway = inhibit peptidoglycan synthesis
  • target protein = inhibit the activity of penicillin binding proteins (PBPs)
  • resistance to carbapenems arisse from the carbapenemase enzyme, blakpc encoded on a transposon -> enzyme cleaves the carbapenem antibiotic
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81
Q

Describe Klebsiella pneumoniae.

A
  • important cause of UTI and respiratory tract infections
  • risk group are immunocompromised patients
  • high proportion of resistance to 3rd generation cephalosporins, fluroquinolones and aminoglycosides -> carbapenem-resistant Klebsiella pneumoniae (CRKP) is the species of CRE most commonly encountered in the US
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82
Q

Describe Pseudomonas aeruginosa.

A
  • important cause of infection in immunocompromised patients
  • high proportions of strains are resistant to several antimicrobials -> in ½ of EU countries resistance to carbapenems is above 10%
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83
Q

Describe MRSA.

A
  • most important cause of antimicrobial resistance infection worldwide
  • methicillin is a beta-lactam antibiotic -> target pathway is inhibition of peptidoglycan synthesis by inhibitingthe activity of penicillin binding proteins
  • resistance mechanim = expression of additional penicillin binding protein -> PBP2A has low affinity for methicillin and can still function in the presence of the antibiotic
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84
Q

Describe Enterococcus faecium.

A
  • third most frequently identified cause of nosocomial blood stream infections (BSI) identified in the US
  • vancomycin resistance is around 60%
  • resistance arises from multiple proteins (genes encoded on plasmid or transposon) resulting in the synthesis of a different PG precursor
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85
Q

Name three factors, which contribute the acquisition of hospital acquired infections.

A
  • intervention -> catheter etc
  • dissemination
  • concentration
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86
Q

True or False. Cephalosporsin is a beta-lactam antibiotic and resistance is due to production of an extended spectrum beta lactamase.

A
  • True
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87
Q

True or False. Methicillin and carbapenem are both beta-lactam antibiotics.

A
  • True
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88
Q

True or False. Carbapenem resistence is frequently found in Klebsiella pneumoniae.

A
  • True
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89
Q

Describe staphulococcus aureus.

A
  • Staphylococcus aureus is a gram positive bacterium
  • produces toxins including exfoliative toxin, toxic shock toxin, and enterotoxins
  • is a commensal bacteria -> 30% of the population carry it, either in the nostrils or on the skin
  • can causes skin, bone, joints and lung infections as well as sepsis
  • some strains are resistant to standard antibiotics -> MRSA
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90
Q

What is the virulence factor of staphylococcus aureus?

A
  • panton valentine leuocidin toxin -> produces a much more necrotising infection
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91
Q

What toxins are produced by staphylococcus aureus?

A
  • panton valentine leuocidin toxin -> virulence factor -> Produces a much more necrotising infection
  • exfoliative toxin -> causes cleavage of the epidermis -> blistering

TSST-1 toxin -> causes sickness, fever, malaise etc. -> organ failure -> 50% of infections with staphylococcus aureus that produce TSST-1 toxin are related to tampons

  • enterotoxin -> a problem in food consumption
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92
Q

What are infections of the skin called?

A

o depends on the layer that they affect

  • impetigo = infection of the top layer of the skin - stratum corneum
  • ecthyma = full thickness involvement of the epidermis
  • folliculitis = infection and inflammation of a hair follicle - can progress into a n abscess (then called a boli) -> carbuncle describes multiple abscesses next to each other
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93
Q

What is impetigo?

A
  • infection of the stratum corneum (top layer of skin) often due to staphylococcus
  • results ina honey-coloured crust on an eroded base
  • often occurs around the nose and mouth but can occur anywhere
94
Q

What is bullous impetigo?

A
  • the bacteria causing the infection makes a exfoliative toxin -> causes cleavage of the epidermis -> extensive blistering
  • blisters are fairly superficial, easily broken and can cause erosions
95
Q

What are ecthyhmas?

A
  • infection involving the full thickness of the epidermis
  • lesions are firmly adherent and the crust will not come off -> surface of the skin is dying
  • commonly occu after an infected wound or insect bite
96
Q

Once a folliculitis has become an abscess what is the best treatment option?

A
  • incise it, and let the pus out and then follow this up with antibiotics
  • if the pus isn’t let out, there is a chance of breeding resistant organisms
97
Q

What is staphylococcal scalded skin syndrome?

A
  • condition caused by a exofoliative toxin often from staphylococcus
  • patient has a staph. aureus infection somewhere in the body and the toxin has entered the blood -> exfoliative toxin is affecting the skin, distant to the origin of the infection -> cleavage of epidermis -> desquamation of the epidermis
  • occurs in children under the age of 5 -> something to do with an immature immune system
  • illness only affects the skin – the mucous membranes are unaffected
98
Q

What is the treatment for staphylococcus skin infections?

A
  • antibiotics and emollients (moisturisers) if required
  • recovery will take place within a few days
99
Q

What is toxic epidermal necrolysis?

A
  • condition involving widespread desquamation of the skin, as a result of an allergic reaction to a drug
100
Q

What is treponema pallidum?

A
  • a gram negative spirochete which causes syphilis
101
Q

What are the 3 phases of syphilis?

A
  • primary (at 3-8 weeks) = chancre (painless ulcer) at inoculation site (genital or oral) -> lasts a few weeks, and then heals
  • secondary (at 6-12 weeks) = disseminated infection, generalised rash and lymphadenopathy -> gets better, and enters a latent syphilis phase
  • tertiary syphilis (usually years later) = skin, neurological and vascular manifestations -> can be life-threatening
102
Q

Describe the rash seen in secondary syphilis and state what other signs may be seen.

A
  • usually a widespread, maculopapular, erythematous rash over the body including the palms and soles
  • may also see warty lesions around the perineum, axillae and groins -> these are called condyloma lata
103
Q

Describe teritary syphilis.

A
  • gummatous skin lesions are barely ever seen now, but they are ulcerating lesions of the skin (often with destruction, particularly around oro-nasal region)
  • vascular abnormalities -> most common one being thoracic aneurysm -> involves dilatation of the thoracic aorta, causing aortic regurgitation and other vascular events
  • neurosyphillis -> dementia, depression, psychoses peripheral neuropathies, headaches etc.
104
Q

What is the potential consequence of being pregnant while suffering from syphilis?

A
  • can cross the placenta and infect the foetus -> babies die (either miscarriage or still birth) or are born prematurely
105
Q

What is the consequence of congenital syphilis?

A
  • babies born alive have features similar to secondary syphilis -> rashes
  • some may have no features at birth, but go on to develop brain/neurological problems and bone disease
  • consequences = skin ulcers, bony defects, saddle nose, blindness, deafness and notched teeth
  • nowadays all pregnant mothers are screened for syphilis
106
Q

How is syphillis treated?

A
  • is confirmed by serological tests it is treated with penicillin antibiotics -> responds very well
107
Q

How many herpes viruses are there?

A
  • 8
108
Q

What is HHV-1 commonly known as, target cell, disease it causes and site of latency?

A
  • common name = herpes simplex virus type 1
  • target cell = muco-epithelial
  • disease = oral herpes
  • site of latency = neuron
109
Q

What is HHV-2 commonly known as, target cell, disease it causes and site of latency?

A
  • common name = herpes simplex virus type 2
  • target cell = muco-epithelial
  • disease = genital herpes
  • site of latency = neuron
110
Q

What is HHV-3 commonly known as, target cell, disease it causes and site of latency?

A
  • common name = varicella zoster virus (VSV)
  • target cell = muco-epithelial
  • disease = chickenpox and shingles
  • site of latency = neuron
111
Q

What is HHV-4 commonly known as, target cell, disease it causes and site of latency?

A
  • common name = epstein-barr virus (EBV)
  • target cell = B cell
  • disease = infectious mononucleosis - glandular fever
  • site of latency = B cell
112
Q

What is HHV-8 commonly known as, target cell, disease it causes and site of latency?

A
  • common name = Kaposi sarcoma ass herpes virus
  • target cell = lymphocytes
  • disease = Kaposi’s sarcoma
  • site of latency = B cells
113
Q

What is the clinical presentation of herpes simplex virus infection?

A
  • vesicular rash for around 2 weeks
  • eczema herpeticum - if the patient has eczema
  • herpes encephalitis
114
Q

What is a rarer first presentation of herpes simplex virus?

A
  • stomatitis = inflammation of the mouth
115
Q

What is the treatment for herpes simplex virus?

A
  • acyclovir
  • if it is eczema herpeticum = intravenous antibiotics, intravenous acyclovir, emollients and topical steroids
116
Q

Describe herpes zoster.

A
  • herpes zoster = shingles
  • after a period of dormancy the HHV-3 will reactivate
  • usually results in the a monolateral rash down one dermatome -> can be bullous
  • if it involves the nasociliary branch of the opthalmic nerve it can lead to blindness
117
Q

What are the 2 types of superficial skin fungal infections?

A
  • dermatophytes - type of mould
  • yeasts
118
Q

What are dermatophytes?

A
  • e.g. Trichophyton rubrum
  • live off and grow in keratin
  • long hyphae and grow from tip
119
Q

What type of infections are caused by dermatophytes?

A
  • cause tinea -> this is suffixed by the name of the body part
  • e.g. tinea unguium is a dermatophyte infection of a nail
120
Q

What is tinea unguium?

A
  • dermatophyte fungal infection of the nails resulting in a yellow, crumbly nail
121
Q

What is the treatment for tinea unguium?

A
  • 3 month course of anti-fungal tablets -> cream wouldn’t work as creams cannot penetrate deep enough into the nail matrix
122
Q

What is tinea capitis?

A
  • dermatophyte infection of the scalp only occurs in children, particularly Afro-Caribbean’s -> adults have anti-fungal chemicals in the sebum of their hair, whereas children do not
123
Q

What is the treatment of tinea capitis?

A
  • orally anti-fungals -> topical treatment wouldn’t penetrat edeep enough
124
Q

What is tinea manuum?

A
  • another name for ringworm -> common in people who regularly handle animals such as rabbits and guinea pigs
125
Q

What is tinea pedis?

A
  • dermatophyte infection of the foot
126
Q

What is tinea crusis?

A
  • dermatophyte fungal infection of the groin region
127
Q

What is tinea facei?

A
  • dermatophyte fungal infection of the face
128
Q

Describe candida intertrigo.

A
  • seen in the mouth, genital area, under the breast and in the axilla
  • you see satellites around the main infection
  • treated with a topical anti-fungal
129
Q

Describe scabies.

A
  • scabies = Sarcoptes scabei
  • is a human to human disease (spread between humans by direct, skin to skin contact)
  • mites and eggs cannot survive off the patient for very long
  • will often have a widespread rash
  • crusted scabies = patient is immunosuppressed, and has thousands of mites on the skin
  • female mite burrows just under the stratum corneum (surface of the epidermis)
  • typically, a scabies infection involves 15-20 mites on the body -> can be found by looking for their burrows -> are around half a centimetre long, and slightly wiggly and have a black dot at one end
130
Q

What are the common sites of burrows in scabies?

A
131
Q

How is scabies treated?

A
  • an insecticide cream, put on all over the body -> cream must be left on the body for 12 hours
  • is repeated 5 to 7 days later - this should clear it
  • all the household contacts should be treated at the same time
  • washing all bedding and clothes at a high temperature is also recommended
132
Q

What are the 2 branches of the adaptive immune response?

A
  • cellular = T cells
  • humoral = antibodies
133
Q

What kind of pathogen are viruses?

A
  • obligate intracellular pathogens
  • any of their proteins are seen as ‘foreign’ so if causing acute infection they are cleared by T cells but if they cause chronic infection they must have a mechanism to avoid detection
134
Q

Describe MHC presentation of a virus.

A
  • cells are constantly looking at what’s inside them -> tend to chop up pieces of viral and cellular peptides in the proteasome
  • these get loaded on to a MHC Class I molecule which is transported up to the cell surface, where it presents these peptide fragments to the outside world
  • if a T cell that bears a specific T cell receptor that matches those peptides, T cell will bind this cell the CD8 T cell will then kill this cell -> engagement of the T cell receptor and the CD8 molecule will trigger a cytotoxic response (release of granzyme)
135
Q

What is the role of TAP?

A
  • proteasome chops up a protein into peptides -> these peptides are loaded into the endoplasmic reticulum through a molecule called TAP
136
Q

Name 3 viruses which evade antigen loading to TAP and how they do so.

A

- EBV: EBNA1 cannot be processed by the proteasome

- HSV: ICP47 blocks access of the processed peptide to TAP

- CMV: US6 stops ATP binding to TAP, preventing translocation

137
Q

What is the role of tapasin?

A
  • foreign molecule is transferred from TAP to a second molecule, called tapasin -> tapasin places the peptide into the groove of the MHC class I molecule before it is transported up to the cell surface
138
Q

Name 2 viruses which modulate tapasin function and therefore prevent MHC transport and state how they do so.

A

- CMV: US3 binds tapasin and prevent peptides being loaded to MHC

- Adenovirus: E3-19K prevents recruitment of TAP to tapasin and also retains MHC in the endoplasmic reticulum

139
Q

How does Kaposi’s sarcoma virus avoid immune detection?

A

o interferes with MHC presentation at the cell surface

  • kK3 protein induces polyubiquitinylation and internalisation of MHC
  • if the MHC reaches the cell surface, the kK3 protein covers it with ubiquitin, and pulls it back
  • T cell receptor will NEVER ‘see’ the MHC presented peptide -> result is a loss of the MHC Class I molecule at the cell surface -> from the internalised endosome, MHC is passed to lysosomes where it is degraded
140
Q

What is the normal mechanism of NK cells?

A
  • mormal healthy cells display MHC at their surface

- cells that don’t display MHC are detected by NK cells and killed

  • viruses that disrupt MHC presentation would end up being killed by NK cells
141
Q

How have viruses evolved to avoid death by NK cells?

A
  • encode MHC analogues (CMV gpUL40) or upregulate MHC to avoid this
142
Q

Define influenza antigenic drift.

A
  • continued rapid evolution driven by antigenic pressure from the host
143
Q

What is meant by HIV quasispecies?

A
  • the appearance of HIV is massively diverse (many different versions and strains)
144
Q

What are the evolutionary pressures driving influenza antigenic drift?

A
  • antibodies usually work by blocking infection -> pre-existing antibodies that are specific for the surface of the virus will coat the virus before it has a chance to latch onto the cell receptor -> virus will not infect the cell, and no new viruses will be made
  • this is called sterilising immunity -> enough antibody (that matches the virus) exists in the host body to prevent the initiation of secondary infection
145
Q

Describe the process of antigenic drift.

A
  • due to the selection pressures viruses evolves, so even if we have produced antibodies against a virus, it may not be effective in preventing re-infection
  • one or two amino acid changes may change the way that the antibody sees the epitope -> virus is now capable of infecting people, even if they were infected before/have been vaccinated against the virus
146
Q

Define influenza antigenic shift.

A
  • introduction of new subtype usually from an animal source
147
Q

How might a universal flu vaccine be produced?

A
  • by causing our immune system to upregulate its antibody response to the stem of the haemagglutinins instead of its current targetting of the heads of the haemagglutinins
  • as the stem doesn’t change (too importnat to the viruses life) this would provide a universal vaccine
148
Q

How is HIV so effective at evading antibodies in HIV?

A

o HIV env gene encodes gp120 protein (these form spikes), which resists neutralization because:

  • there are very few gp120 spikes on the viral surface -> large space between spikes prevents, which prevents antibody crosslinking
  • extensive glycosylation of gp120 masks antibody epitopes (sugar acts like an umbrella) -> functionally important parts of the molecule (e.g. CD4 binding site) are poorly accessible
  • CD4 is the receptor that gp120 binds to, in order for HIV to enter cells -> there are redundant amino acids that are visible to B cell receptor and antibodies
  • surface amino acids are being changed all the time to evade antibody attack -> huge variation in the redundant amino acids means that most antibodies are highly clade specific
149
Q

What is the problem with neutralising HIV using antibodies?

A
  • somehow want to encourage a person to actively produce antibodies that neutralise all the different strains that any particular virus -> antibodies that can cross-react with many HIV strains do exist alongside virus in people -> bNabs produced as biological therapeutics can control viral load
  • HIV isevolving very fast -> if you give an infected person a broadly neutralising antibody, to begin with, it works and the viral load is controlled however later on, the viral load increases again -> virus has selected for resistant viruses
150
Q

How does rhinovirus continually cause the common cold?

A
  • exists as more than 120 antigenically distinct serotypes -> never going to have them all and making a vaccine against all of them is improbable
151
Q

Describe the polio vaccine.

A

o polio virus has a similar structure to rhinovirus but only has 3 distinct serotypes

o two vaccines for polio -> have come close to eliminating poliovirus from the world -> 1 serotype is already eradicated

  • a live, inactivated vaccine
  • a dead vaccine
  • are 3 serotypes of poliovirus required a trivalent poliovirus vaccine -> 3 serotypes are mixed in approriate quantities to bring a response to all 3 -> only 2 now due to the eridication of one strain
152
Q

What is dengue haemorrhagic fever?

A
  • only get the fever on a second bout of dengue infection -> first time you are fine

o causes leakage of plasma from the capillaries which leads to:

- increased haematocrit

- increased red cell count

- decrease in protein in the blood

  • has a tendency to cause severe bruising and bleeding
  • DHF is detected by increased RBC count and decreased serum protein
  • patient deteriorates even after the fever drops: shock
  • treat with IV fluids but no specific treatment
153
Q

What is antibody dependent enhancement of dengue virus?

A
  • if you have been infected with one serotype of dengue, you will develop antibodies against it
  • if another serotype infects you, your antibodies will bind to but not neutralise the new serotype of dengue -> will cause antibody dependent enhancement of the current dengue serotype causing dengue haemorrhagic fever -> the antibodies become HARMFUL by giving the virus entry into cells via a new route
  • heterotypic antibody bound to the virus can be detected by Fc receptors on immune cells (e.g. monocytes)
  • antibody-virus complex enters the monocyte -> dengue virus on its own wouldn’t normally be able to do this
  • viral replication takes place in the monocyte -> monocytes release many IFNs, leading to cytokine storm
154
Q

What are the complications of a dengue vaccine?

A
  • it would need to make fully neutralising antibodies against all four serotypes
  • a vaccine that stimulated antibody production against one serotype, the first time they get infected with a different serotype could be fatal
155
Q

Describe virus-mediated immunosuppression using an example.

A
  • some viruses lead to immunosuppression
  • measles virus infects CD150 positive cells, including memory lymphocytes and erases immunological memory -> measles virus infection results in a 2-3 year decrease in immunological memory -> leads to morbidity and mortality from other diseases
  • why it is so important to be vaccinated against measles
156
Q

Which answer is not true?
Viruses that can’t control the innate immune system well might….

A: be useful as oncolytic agents

B: be difficult to grow in standard cell culture systems

C: be restricted at crossing the host range barrier and unlikely to spark outbreaks in other species

D: be useful as live-attenuated vaccines

E: be highly adapted to their host species

A

o E

  • B is true because most cultures have some innate immune system element to them to help the growth of targetted cells
157
Q

Which is true?
Viruses counteract activation of the innate immune system by:

A: varying their coat protein sequences

B: encoding proteins that cleave or target host immune factors for degradatio

C: preventing the loading of peptides by TAP

D: inducing a cytokine storm

E: encoding MHC homologues

A
  • B
  • other affect adaptive immune system
158
Q

Which is true?
RNA viruses are more likely than DNA viruses to

A: code for proteins that interfere with innate immunity

B: code for proteins that interfere with cellular immunity

C: Have error prone polymerases that promote antigenic variation

D: Use lipid envelopes to protect their genomes that contain host proteins (control complement activation)

E: Activate interferon induction pathway through cGAS and STING

A
  • C
  • A, B and D are found in both types and E is more likely in DNA viruses
159
Q

Which is NOT true concerning the interplay between Hepatitis C virus and the immune systems?

A: Its E2 protein varies by more than 30% so antibodies only bind a tiny fraction of the viral quasispecies

B: T cell epitopes vary so that the virus is not cleared in the early stage of infection – this determines chronicity

C: NS3/4A protease cleaves MAVS and prevents activation of interferon

D: It encodes a protein called vif that counteracts the ISG APOBEC and prevent it from inducing hypermutation of the viral genome

E: A genetic polymorphism in IL28b results in non-responsiveness to interferon treatment

A

o D

  • D is a mechanism found in HIV not hepatitis C
160
Q

Define vector.

A
  • an organism, typically a biting insect or tick, that transmits a disease or parasite from one animal or plant to another
161
Q

Define parasite.

A
  • an organism living in (endo)/on (ecto) the host and dependent on it for nutrition, causing damage
  • can be endoparasites or ectoparasites
162
Q

What are the 2 classes of endoparasites?

A
  • protozoa -> single-celled organisms
  • metazoa -> multicellular organisms - Helminths/worms
163
Q

Describe protozoa.

A

- single-celled e_ukaryotes_ -> their genome is within a nucleus, and they have complex organelles in the cytoplasm

  • pathogenesis (mechanism of disease) varied
  • some have vectors (e.g. malaria - human to human transmission via a mosquito) other by the faecal-oral route
  • not characterised by eosinophilia
164
Q

Describe metazoa.

A

- multicellular organisms -> Helminths/worms

  • free living, intermediate hosts and vectors
  • some just inhabit the gut (geohelminths) others invade tissues
  • characterised by eosinophilia (if the organism invades the blood)
165
Q

What are the 4 groups of protozoa?

A

- Amoebae: Entamoeba histolytica, Entamoeba dispar

- Coccidian: Plasmodium species,Toxoplasma, Cryptosporidium

- Ciliates: Balantidium coli

- Flagellates: Trichomonas, Giardia, Trypanosoma, Leishmania

166
Q

Name 2 amoebae protozoa.

A
  • Entamoeba histolytica
  • Entamoeba dispar
167
Q

How do you become infected with a amoebae protozoa?

A
  • ingestion of mature cysts in food or water, or on hands contaminated by faeces
168
Q

How big of a problem are amoebae protozoa?

A
  • about 10% of the world’s population is infected with E. histolytica -> 90% are asymptomatic but the remaining 10% produce a spectrum of disease, varying from dysentery to amoebic liver disease
  • 3rd most common cause of death or parasitic infections (after schistosomiasis and malaria) -> common in South/Central America, and in West/South East Asia
169
Q

Describe the pathway/infectious route of amoebic protozoa.

A
  • humans are the only reservoir in amoebic infection
  • infection occurs by ingestion of mature cysts in food or water, or on hands contaminated by faeces
  • cysts of E. histolytica enter the small intestine and release active amoebic parasites (trophozoites) -> invade the epithelial cells of the large intestines, causing flask-shaped ulcers -> can spread from the intestines to other organs, e.g. liver, lungs and brain, via venous system
  • asymptomatic carriers pass cysts in faeces and the asymptomatic carriage state can persist indefinitely
  • cysts remain viable for up to 2 months
170
Q

Describe the pathogenesis of amoebic protozoa.

A
  • cysts of E. histolytica enter the small intestine and release active amoebic parasites (trophozoites) -> invade the epithelial cells of the large intestines, causing flask-shaped ulcers
  • infection can spread from the intestines to other organs, e.g. liver, lungs and brain, via venous system -> causes amoebic liver disease as well as respiratory and neuronal issues
171
Q

How can amoebic protozoa infection be diagnosed?

A
  • diagnosed by direct microscopy ->> look for them on a slide of faeces
  • a wet mount -> cysts are spherical and measure 12-15 micrometres
  • mature cyst has 4 nuclei while an immature cyst contains only 1-3 nuclei
172
Q

What species cause malaria?

A
  • plasmodium species -> part of the coccidia family
173
Q

What are the symptoms of malaria?

A
  • fever, headache, chills, vomiting, muscles pain and paroxysm (fever which goes up and down) in cycle of 4 to 8 hours
  • can appear as early as 7 days but the time between exposure and signs of illness can be as long as one year - depends on the type of plasmodium -> e.g. 9 to 14 days for Plasmodium falciparum
174
Q

What are the complications of malaria?

A

- severe anemia (due to destruction of red cells) – MOST COMMON

- cerebral malaria (swelling of the brain, seizures and coma) – MOST COMMON

  • liver failure
  • shock
  • pulmonary oedema
  • abnormally low blood sugar
  • kidney failure
  • swelling and rupturing of the spleen
175
Q

What is the treatment for malaria?

A
  • uncomplicated malaria = chloroquine, atovaquone-proguanil, artemether-lumefantrine, quinine sulfate plus one of the following: doxycycline, tetracycline or clindamycin quinine sulfate, mefloquine
  • severe malaria = artemisinin-based combination therapy (ACT) is recommended for the treatment of P. falciparum malaria
176
Q

How is malaria diagnosed?

A
  • blood film using giemsa stained microscopy -> can detect the type of the malaria by looking at the shape of the parasite
  • rapid test is available commercially -> antigen detection tests -> is expensive and less sensitive
177
Q

Name 3 coccidia protozoa infections.

A

o plasmodium species

o toxoplasma

o cryptosporidium

  • are most zoonoses
178
Q

How does toxoplasma infect humans?

A
  • eating undercooked meat of animals harboring tissue cysts
  • consuming food or water contaminated with cat feces
  • contaminated environmental samples
  • blood transfusion
  • organ transplantation
  • transplacentally from mother to foetus
179
Q

What does taxoplasma cause?

A

o toxoplasmosis

  • mild disease in immunocompetent individuals -> fever, swollen lymph nodes, headaches, sore throat
  • however, in pregnancy -> toxoplasmosis poses serious danger for the foetus
180
Q

What can develop in immunocompromised patients infected with toxoplasma?

A
  • central nervous system disease
  • brain lesions
  • pneumonitis
  • retinochoroiditis
181
Q

Describe cryptospordidium infection.

A
  • if you are healthy, you are unlikely to even realised you have been infected
  • if you are immunosuppressed, it causes many problems -> illness is very common in HIV patients
  • causes diarrhoea, fever, nausea and vomiting in humans
182
Q

How is cryptosporidium diagnosed?

A
  • stool examination
183
Q

How is cryptosporidium treated?

A
  • fluid rehydration to make up for fluid lost due to diarrhoea
184
Q

Name a ciliate protozoa.

A
  • Balantidium coli -> causes balantidiasis
185
Q

Describe Balantidium coli.

A
  • reservoir hosts include pigs, rodents and primates -> is a worldwide distribution
  • ciliates are asymptomatic most of the time but, it is a problem in HIV positive patients -> may experience more severe signs and symptoms
  • symptoms = persistent diarrhea, dysentery, abdominal pain, weight loss, nausea, and vomiting. If left untreated, perforation of the colon can occur
  • diagnosis = stool examination
  • treatment = fluid replacement
186
Q

Name 3 flagellate protozoa.

A
  • giardia -> giardia lamblia
  • trichomonas
  • leishmania
187
Q

How can Giadria lamblia infection be prevented?

A

o is a water-bourne protozoal infection causing Giardiasis

  • flagellated trophozooites attach by their suckers to surface of the duodenal or jejunal mucosa
  • ovoid cysts are able to survive standard chlorination procedures
  • filtration is required to exclude them from drinking water
  • 2% of adults and 6% to 8% of children in developed countries worldwide
  • 33% of people in developing countries
188
Q

What are the symptoms of Giardia infection?

A
  • most people infected with giardia have no symptoms -> asymptomatics can still transmit cysts
  • acute symptoms = diarrhea, greasy stools that tend to float, stomach or abdominal cramps, upset stomach or nausea/vomiting, dehydration (loss of fluids)
189
Q

How is Giardia infection diagnosed?

A
  • stool examination
190
Q

How is Giardia infection treated?

A
  • metronidazole or tinidazole
191
Q

How is trichmonoas transmitted?

A

- transmitted sexually -> most common, curable, non-viral STI in the UK -> in adults it is exclusively transmitted sexually

  • in women the organism is found in the vagina, urethra and para-urethral glands
  • in men infection is usually of the urethra
192
Q

What are the symptoms of trichomonas?

A
  • 10-50% are asympotomatic

o females = vaginal discharge, vulval itching, dysuria, or offensive odour (not specific for TV) -> occasionally the presenting complaint is of low abdominal discomfort or vulval ulceration

o males = discharge and/or dysuria

193
Q

What are the complications of trichomonas?

A
  • detrimental outcome on pregnancy and is associated with pre-term delivery and low birth weight.
  • HIV -> is growing evidence that trichomonas infection may enhance HIV transmission and there may be an increased risk of TV infection in those that are HIV positive
194
Q

How is trichomonas infection diagnosed?

A
  • microscopy -> detection of motile trichomonads in swab/urinem,
  • trichomonas rapid test
195
Q

How is trichomonas treated?

A
  • metronidazole
196
Q

Describe helminths metazoa infections.

A
  • Helminths are complex multicellular parasites
  • cycles may involve insect vectors and intermediate hosts -> for most, humans are the definitive host
  • adult worms cannot multiply in man
  • lay eggs, microfilaria and larvae
  • HIGHEST worm burdens are in school-aged children
197
Q

What are the different types of worms?

A
  • roundworms = Nematodes -> Ascaris, hookworm, Filaria, Strongyloides
  • flatworms = Cestodes ->Taenia (tapeworms)
  • flukes = Trematodes -> Schistosoma
198
Q

Describe the symptoms and pathology of ascariasis nematodes.

A
  • infection with Ascaris lumbricoides often causes no symptoms but a large number of worms may cause abdominal pain or intestinal obstruction
  • adult worms feed on the contents of the small intestine and in heavy infections may compound problems in malnourished individuals (especially children)
  • migration of larvae may cause localized reactions in various organs -> penetration of the larvae from capillaries into the lungs can lead to Loeffler’s pneumonia -> causes pools of blood and dead epithelial cells clog air spaces in the lungs -> resulting bacterial infections can be fatal
199
Q

How is a nematode infection diagnosed?

A
  • stool examination -> eggs have a very distinct shape
200
Q

What is the treatment for nematode metazoa infection?

A
  • albendazole and mebendazole
201
Q

How long are nematodes?

A
  • ascariasis = 15-30cm
  • hookworm = 1 cm
202
Q

What are the symptoms and what is the pathology of hookworm nematodes?

A
  • iron deficiency anemia -> caused by blood loss at the site of intestinal attachment of the adult worms -> can be accompanied by cardiac complications
  • gastrointestinal and nutritional/metabolic symptoms can also occur
  • local skin manifestations can occur during penetration by the filariform (L3) larvae
  • respiratory symptoms can be observed during pulmonary migration of the larvae
203
Q

What parasites cause lympathic filariasis and how do they do so?

A
  • brugia malayi and wucheria bancrofti -> both are nematodes
  • organisms can block lymphatic vessels -> leading to massive limbs
  • lymphatic obstruction (especially in the legs) can progress to elephantiasis -> can also occur in arm, breast, scrotum
204
Q

How are brugia malayi and wucheria bancrofti trnasmitted to humans?

A
  • mosquito
205
Q

How does the diagnosis and treatment for brugia malayi and wuchereria bancroft different to other nematodes?

A
  • diagnosis = microfilariae are found mainly in the peripheral blood and can be found at peak amounts from 10 p.m. to 4 a.m. -> during the day, they are present in the deep veins, and during the night, they migrate to the peripheral circulation -> blood smear/antigen detection with a immunochromatic test
  • treatment= albendazole and ivermectin
206
Q

Describe Loa Loa infection.

A
  • causes loaiasis
  • worm is mainly found in the eye and it can be seen moving in the eye and in the patient’s vision
  • transmitted by a fly
  • confined to Africa
  • adult worm live in man for 4-12 years if untreated
207
Q

Describe Taenia spp. infection.

A
  • humans are the only definitive hosts for tapeworms -> T. solium,T. asiatica (pork) and T. saginata (beef)
  • can be seen in the faeces as a segmental, flat worm
  • worm can be ingested by eating raw meet (eggs in the food can enter the body)
  • eggs of these worms can survive for days to months in the environment
208
Q

What are the symptoms of Taenia/tapeworm infection?

A
  • most people have no symptoms or mild symptoms
  • patients with T. saginata taeniasis often experience more symptoms (size of the worm up to 10m) that those with T. solium or T. asiatica (3 m)

o can cause digestive problems including abdominal pain, loss of appetite, weight loss, and upset stomach -> most visible sign of taeniasis is the active passing of tapeworm segments

209
Q

How is the diagnosis of Taenia infection made?

A
  • segment in the stool or identification of distinct eggs in stool
210
Q

How is Taenia infection treated?

A
  • praziquantel
211
Q

What is the most common cause of acquired epilepsy in the world?

A
  • Taenia solium -> can cross the BBB
212
Q

What causes schistosomiasis?

A
  • trematodes -> S. mansoni, haematobium, japonicum etc.
213
Q

What are the symptoms of schistosomiasis/trematode infection?

A
  • within days = rash or itchy skin
  • within 1-2 months = fever, chills, cough, and muscle aches -> most people have no symptoms at this early phase of infection
  • when adult worms are present, the eggs that are produced usually travel to the intestine, liver or bladder, causing inflammation or scarring -> children who are repeatedly infected can develop aenemia, malnutrition, and learning difficulties
214
Q

How is schistosomiasis diagnosed?

A
  • stool or urine samples
215
Q

How is schistosomiasis treated?

A
  • praziquantel (but this has a lot of side effects)
  • the snail intermediate host can be killed to stop the cycle of the parasite
216
Q

Name 2 ectoparasites.

A
  • scabies
  • lice
217
Q

Describe scabies.

A
  • scabies (sarcoptes scabiei) is an ectoparasite
  • transmission requires direct, skin-to-skin contact
  • female scabies parasite deposits eggs in the skin, forming burrows -> eggs hatch beneath the skin, and release larvae -> causes itching
  • diagnosis for scabies is looking for the appearance of a rash and burrows on the skin
  • treatment involves scabicides (drugs that are specific to scabies)
218
Q

Name 3 lice.

A
    • Pediculus humanus capitis* = head louse
    • Pediculus humanus corporis* = body louse, clothes louse
    • Pthirus pubis* = “crab” louse, pubic louse
219
Q

What are the 3 stages to a lice life cycle?

A
  • eggs, nymphs and adult
  • transmission by direct contact = must be close proximity between individuals for transmission
220
Q

What is the vector for leishmania?

A
  • the sandfly
221
Q

Describe the 2 forms of leishmania.

A

- Promastigote -> form that is transmitted by the sandfly

  • has a flagellum
  • can be culture

- Amastigote -> form that is achieved inside the phagocytic cells of the host

  • form the leishmania within humans or other vertebrate host cells
  • have resorbed their flagellum and are no longer motile
222
Q

What are the 2 major forms of leishmaniases?

A
  • visceral
  • cutaneous
223
Q

What are the symptoms of visceral leishmaniasis?

A
  • characterised by irregular fever, weight loss, swelling of liver and spleen, anaemia -> affects the internal organs
  • MAIN SYMPTOMS = hepatosplenomegaly, anaemia and malnourishment
  • can be fatal
  • is also called black fever
224
Q

What are the risk factors for visceral leishmaniasis?

A
  • are 30-100 subclinical infections for every overt, symptomatic VL case
  • risk factors for development of disease = malnutrition, immunosuppression, HIV co-infection
225
Q

How is visceral leishmaniasis diagnosed?

A
  • diagnosis is based on case definition: “a person who presents with fever of more than two weeks with splenomegaly and/or lymphadenopathy or either of weight loss, anaemia or leucopenia while living in a known VL endemic area or having travelled to an endemic area”

- parasite and antibody detection are more commonly used when available

226
Q

What is the treatment for leishmaniasis?

A
  • sodium stibogluconate (SSG) or meglumin antimoniate (monotherapy)
227
Q

What are the 3 forms of cutaneous leishmaniasis?

A
  • localised
  • diffuse
  • mucocutaneous
228
Q

Describe localised cutaneous leishmaniasis.

A
  • skin lesions on exposed body parts, often self-healing
  • can create serious disability and scars immunity to reinfection
  • in localised disease, a portion of the skin begins to crust and it will eventually heal
  • are left disfigured -> children cannot go to school (bullying), women cannot marry easily -> causes many social problems
  • once someone is exposed to the disease, they are subsequently immunized
229
Q

Describe diffuse cutaneous leishmaniasis.

A
  • disseminated lesions characterised by nodules (non-ulcerating lesions)
  • resembles leprosy difficult to treat, no spontaneous healing, frequent relapses -> because the nodules do not ulcerate, they never heal
  • nodules are FULL of parasites
  • no controlling treatment -> lots of social stigma due to the lesions looking like leprosy
230
Q

Describe mucocutaneous leishmaniasis (aka mucosal leishmaniasis).

A
  • disfiguring, destroys mucous membranes
  • caused by L. braziliensis
  • can destroy the mucosa of the nose and mouth, and can therefore be very severe -> causes malnutrition because it hurts to eat
  • no spontaneous healing, and relapse take place