Microbiology Flashcards
Define pathogen.
Organism that causes or is capable of causing a disease.
Define commensal.
Organism that colonises the host without causing a disease, in normal circumstances.
List 5 locations commensals are found.
1) skin
2) mouth
3) mucosal surfaces
4) urethra
5) vagina
List 7 locations commensals are not found, i.e. sterile.
1) blood
2) cerebrospinal fluid
3) pleural cavity
4) peritoneal cavity
5) lower respiratory tract
6) urinary tract
7) joints
Define virulence.
The degree to which a pathogen is pathogenic.
What is a synonym of virulence?
Pathogenicity.
Define virulence factor. (5)
Molecules produced by pathogens that enable them to:
1) colonise host
2) obtain host nutrients
3) immunoevade
4) immunosuppress
5) enter and exit cells (intracellular pathogen)
Define asymptomatic carriage.
Pathogen in a tissue site without causing a disease.
List Koch’s postulates of disease. (4)
1) microbe must be found in all diseased individuals
2) microbe must be isolated from diseased individual and grown into a pure culture
3) individual inoculated with pure microbe culture should develop disease
4) microbe must be reisolated from inoculated diseased individual
Define coccus.
Round bacteria.
Define bacillus.
Rod-shaped bacteria.
Define diplococcus.
Paired round bacteria.
Define vibrio.
Curved rod-shaped bacteria.
Define spirochaete.
Spiral rod-shaped bacteria
Define spore.
Dormant form of bacteria that is highly resistive to physical and chemical influences.
Define opportunistic pathogen.
Organism that causes disease only in immunocompromised individuals.
Define desiccation.
A state of extreme dryness.
What temperature is the bacterial environment?
-80C to +80C.
What pH is the bacterial environment?
pH 4 to pH 9.
List 3 forms of mutation that lead to genetic variations in bacteria.
1) substitution
2) deletion
3) insertion
List 3 forms of gene transfer that lead to genetic variation in bacteria.
1) transformation, e.g. plasmid
2) transduction, e.g. phage
3) conjugation, e.g. sex pilus
How long can spores be desiccated?
> 50 years.
How long can bacteria be desiccated?
2 hours to 3 months.
Define endotoxin.
Lipopolysaccharide (LPS), found on outer membrame of Gram negative bacteria.
Define exotoxin.
Proteins secreted by bacteria.
Which has a specific action, exotoxin or endotoxin?
Exotoxin.
List the 3 components of LPS of Gram negative bacteria.
1) lipid A - toxic
2) core antigen (R) - short sugar chain
3) somatic antigen (O) - repeating oligosaccharide chain
Which is stable in high temperatures, exotoxin or endotoxin?
Endotoxin.
What is Gram staining?
Staining method used to separate bacteria into two groups, Gram positive and Gram negative.
Which doesn’t bind well to immune cell receptors, exotoxin or endotoxin?
Endotoxin.
What property does the Gram stain use to differentiate bacteria? (2)
Peptidoglycan in cell walls.
1) Gram positive bacteria have a single membrane cell wall with large amounts of peptidoglycan.
2) Gram negative bacteria have a double membrane cell wall with small amounts of peptidoglycan.
List the steps of Gram staining. (4)
1) crystal violet stain - purple primary stain
2) iodide - fixes crystal violet to peptidoglycan
3) ethanol/acetone - decolorisation
4) safranin/carbyfuscin - pink counter stain
Why do Gram negative bacteria find secreting proteins harder?
Protein has to pass through two membranes.
How do you differentiate Gram positive cocci into Staphylococci and Streptococci?
Catalase testing.
What are the results of catalase testing? (2)
1) Staphylococcus, catalase positive.
2) Streptococcus, catalase negative.
Define Staphylococcus.
Clusters of Gram positive cocci.
How do you differentiate Staphylococci?
Coagulase test.
What is the coagulase test?
Test for the enzyme coagulase.
What is coagulase?
A virulence factor that clots blood plasma, forming a fibrin clot around the bacteria protecting it from phagocytosis.
What are coagulase negative bacteria generally?
Opportunistic.
How do you differentiate Staphylococci aureus? (5)
1) cocci
2) clustered
3) Gram positive
4) coagulase test positive
5) golden colour
How do you differentiate Staphylococcus saprophyticus? (4)
1) cocci
2) clustered
3) Gram positive
4) coagulase negative
Define Streptococcus.
Chains of Gram positive cocci.
List 3 ways of differentiating Streptococci.
1) haemolytic testing
2) Lancefield grouping
3) optochin disc testing
List the 3 outcomes of haemolytic testing.
1) α - partial lysis —> greening
2) β - complete lysis —> clearing
3) γ - no lysis —> red
List 5 α haemolytic Streptococci.
1) Streptococci pneumoniae
2) viridans Streptococci
3) Streptococci oralis
4) Streptococci milleri
5) Streptococci sanguis
List 2 β haemolytic Streptococci.
1) Streptococci pyogenes
2) Streptococci agalactiae
Name a γ haemolytic Streptococci.
Streptococci bovis.
How do you differentiate Staphylococcus epidermidis? (4)
1) cocci
2) clustered
3) Gram positive
4) coagulase negative
What is Lancefield grouping.
Using antibodies to test for carbohydrate cell surface antigens.
What is a positive result in Lancefield grouping?
Suspension of bacteria, agglutination.
What are the Lancefield types.
A-H and K-V, but A and B are most important.
What Streptococci is Lancefield group A postive?
Streptococci pyogenes.
What Streptococci is Lancefield group B positive?
Streptococci agalactiae.
Describe optochin disc testing. (3)
1) disc is placed on agar
2) if growth is inhibited around the disc, positive
3) if growth is normal around disc, negative
What is optochin testing used to differentiate?
Streptococci pneumoniae.
How do you differentiate Streptococci pneumoniae? (5)
1) cocci
2) chained
3) Gram positive
4) α haemolytic
5) optochin disc sensitive
How do you differentiate viridans Streptococci? (5)
1) cocci
2) chained
3) Gram positive
4) α haemolytic
5) optochin disc resistant
Where do viridans Streptococci generally infect?
Orally.
How do you differentiate Streptococci pyogenes? (5)
1) cocci
2) chained
3) Gram positive
4) β haemolytic
5) Lancefield group A
How do you differentiate Streptococci agalactiae? (5)
1) cocci
2) chained
3) Gram positive
4) β haemolytic
5) Lancefield group B
How do you differentiate Streptococcus bovis? (4)
1) cocci
2) chained
3) Gram positive
4) γ haemolytic
What are the 2 groups of Gram positive bacilli?
1) aerobic
2) anaerobic
List the 3 types of aerobic Gram positive bacilli.
1) Cornybacterium, e.g. C. diphtheria
2) Listeria, e.g. L. monocytogenes
3) Bacillus, e.g. B. anthracis
Name a type of anaerobic Gram positive bacilli.
Clostridium.
List 4 examples of Clostridium.
1) Clostridium perfringens
2) Clostridium tetani
3) Clostridium botulinium
4) Clostridium dificile
List 3 types of Gram negative cocci.
1) Neisseria
2) Moraxella
3) Veillonella
How do you differentiate Gram negative bacilli?
Whether they ferment in lactose.
List 3 agar plates containing lactose that differentiate Gram negative bacilli.
1) MacConkey
2) CLED
3) XLD
List 2 lactose fermenting Gram negative bacilli.
1) Escherichia coli
2) Klebsiella
List 3 non lactose fermenting Gram negative bacilli.
1) Shigella
2) Salmonella
3) Pseudomonas
How do you differentiate lactose fermenting Gram negative bacilli? (2)
1) biochemical identification, e.g. API strips
2) sensitivity tests
What is the colour change in MacConkey agar with the presence of a lactose fermenting Gram negative bacilli?
Yellow —> Red.