Microbiology Flashcards
Pro karyote
70s
no nucleus
plasmid chormosome
no organelles
Eukaryote
80s
nucleus
organelles and cytoskeleton
size order of microbes
virus bacteria fungi protozoa helminths
gram positive
thick peptidoglycan retains the stain
gram staining
fixation crystal violet iodine treatment decolonisation- acetone counterstain
catalase
+=staph
-=strep
enzyme decomposes hydrogen peroxide into water and oxygen
coagulase
+=staph aureaus (MRSA and MSSA)
-= CoNS (epidermis and saphrophyticus)
different strep
alpha- partial clearing, green
beta- complete clearing
gamma- non haemolytic
optochin
susceptible- strep pneumonia
resistant- viridans strep (oral)
viridans strep
mitis
oralis
salivarius
mutans
lactose fermentor
pH agar change
beta lactams examples
penicillin cephalosporin carapenams monobactams beta=lactamase inhibitors
beta lactams all contain…
common ring
binds to dalamine on bacteria
inhibits cell wall synthesis
penicillins
natural V or G
penicillinase resistant fluclox
broad spectrum
b/lactam+blactamase inhibitor= coamoxiclav
cephalosporins
1st gen: +cocci and -UTI ORAL
2nd: +cocci and -UTI ORAL +CAP/COPD IV
3rd: -rods
4th: pseudomonas and some +cocci
clavam
clavulanic acid
cephalosporins types
1st cefalexin
- cefuroxime
- cefotaxime and ceftriaxone (T’s)
- cefepime (strange name)
mono bactam
aztreonam
penicillin ADME
IV/oral
1-2hours
body water
urinary excretion
side effects of penicillins
allergy c.diff liver platelet cns
Pen V
beta strep
pneumococci
meningococci
gonococci
fluclox
s. aureus
co-amoxiclav
otitis media COPD CAP UTI skin and soft tissue gonococcus salmonella
tazobactam+piperacillin=tazocin
hospital IV therapy
carbapenem
meropenem
IM only
2/3 line
works like other beta lactams
cephalosporins dont’ work for
MRSA enterococci listeria legionella c.diff camplylobacter
hospital acquired sepsis unknown site
ceftazidime +2nd agent
CAP you give
ceftriaxone
intra abdominal infection you give
metronidazole
pseudomonas you give
ceftazidime
fluoroquinolones
ciprofloxacin
use fluoroquinolones for
gram -ves
lower urinary tract
fluroquinolones
inhibit gyrase
fluroquinolones ADME
PO/IV
metabolism and renal clearance
SE of fluroquinolones
rashes/photosensitivity
tendenitis and rupture
c.diff
QTC PROLONGATION with moxi- suddent death and hepatotoxicity
ciprofloxacin good for
gram -ves
atypical chest pathogens
moxifloxacin good for
like cipro but also staph and strep
aminoglycasides
gent
inhibit protein making at ribosome
aminoglycasides ADME
IV/IM
concentrates in kidneys and ears (toxic)
renal excretion
use aminoglycasides for..
gram -ves
e coli
pseudomonas
always use gent…
with something!
SE of aminoglycasides
kidney, ear toxicity
kidney reversible.
required therapeutic monitoring and dose adjustment.
glycopeptides
IV only
cell wall
vancomycin
glycopeptides for…
MRSA
gram +ves nearly all!
no action against negs
glycopeptides ADME
IV
renal excretion
nephro/oto toxicity
side effects of glycopeptides
red man syndrome
thrombocytopaenia with teicoplanin
oral vancomycin for
c.diff
macrolides examples
erythromycin, clarithrymycin
macrolides
IV/PO
lower respiratory tract
good for penicillin allergic
inhibits protein at ribosome
macrolides ADME
renal and biliary excretion
macrolides SE
nausea, GI upset.
macrolides good for….
gram +ves (staph, strep)
legionella
mycoplasma, clamydia
only neg good for it campylobacter
tetracyclines
minocycline, doxycyline
tetracyclines good for
acne
oral against MRSA
tetracyclines ADME
inhibits ribosome
resistance quite common
NOT for kids- binds to calcium, funny teeth.
metronidazole
anaerobes
resistance rare
disrupts DNA
side effects of metronidazole
disulphiram like reaction with alcohol
peripheral neuropathy with long term use.
trimeth works by
inhibiting folate synthesis
linezolid
PO/IV
gram +ves including MRSA
side effects of linezolid
thrombocytopenia (FBC EVERY WEEK)
neuropathy
when do we use linezolid?
second ling against serious gram +ve infection
daptomycin
IV only
good for MRSA
side effects of daptomycin
muscle toxicity
not suitable for lung infections.
HSV drugs
aciclovir, valaciclovir, famiclovir
CMV drugs
ganciclovir
foscarnet
Hep B drugs
lamivudine, adefovir
interferon and peg.
Hep C drugs
ribavirin
interferon
Influenza A drug
Amantadine rimantidine non-nucleosides block function of matrix protein hardly ever used because of parkinsonianism post exposure NOT treatment
Infuenza drugs
Zamanavir
Oseltamirvir
Broad spectrum antivirals
ribavirin- anti RNA
cidofovir- anti DNA
nucleosides
mimic ACTG but need to be phosphorylated
aciclovir
guanosine
inhibits viral DNA polymerase
needs phosphate from viral thymidine kinase
incorporated into viral DNA
how to give aciclovir
5x a day! for a week
need to start within 72 h
IV is much better! 8 hourly.
topical sucks.
aciclovir and renal failure
dose reductino
valaciclovir
prodrug for aciclovir
take 3x a day
good for immunocompromised
when aciclovir causes GI problems..
famiciclovir
prodrug
take it just once!
Old people with zoster
ganciclovir
PO/IV nucleoside inhibits polymerase needs viral kinase becomes resistant after 3 months
ganciclovir side effects
induces neutropaenia
Foscarnet
IV only
doesn’t need phosphorylation
if resistant to ganciclovir
foscarnet side effects
renal toxicity.
NRTI (nucleoside)
Zidovudine
require host cell phosphate
resistance after 2-5 years
pNRTI (nucleotide)
Tenofovir
already phosphated
chain terminator
NNRTI (non-nucleoside)
Nevirapine
blocks reverse transcriptase
resistance after 3 years
ALWAYS WITH NRTI/pNRTI
PI
nelfinavir
makes HIV immature
very, very potent but high resistance
metabolised by p450
(use with ritonavir to inhibit P450)
ALWAYS WITH NRTI/pNRTI
FI
T20
start HAART when
uner 350/ml of blood
HAART treatment failure
not VL<400
viral rebound
more than one drug changed at a time
side effects of NRTIs
anaemia
neutropenia
lactic acidosis
triple therapy
zidovudine, lamivudine, nelfinavir
side effects of NNRTIs
rash, fever, myalgia, hepatitis, diarrhoe
side effects of PIs
GI.
good types of hep C (genotype
2/3
treat for 24 weeks
bad types of hep C
1/4/5
treat for 48 weeks
Interferon alpha side effects
lethargy
insomnia
diarrhoea
depression
no interferon for
heart and liver disease
renal filaure
epilepsy
pregnant
pegylated IFalpha for
HCV 1
normal for others
meningococcus live in
the nose
h.influenza lives in
the nose
strep pneumonia lives in
the nose
moraxella catarrhalis lives in
the nose
cefotaxime
third gen ceph
gram -ves! neisseria, hinfluenza
SOME +ves
IV 8 hourly
good CSF penetrance
amoxicillin
broad gram -ve and +ve resistance frequent can be oral can be with betalactamase inhibitor (Co-amoxiclav)
penicillin sensitivity
pneumococcus- almost always
menigococcus- usually
H.influenza b- nearly never
m catarrhalis- frequently not
how many amoxicillin in one day?
8
bananas
how many penV in a day?
6
petrol
2 methods of spread of bone infection
deep penetration (adults) haematogenous (children- have capillaries that cross joint)
3 types of osteomyelitis
haematogenous- bacteraemia
contiguous- trauma or surgery, external fixation etc.
diabetic- reduced blood flow, skin changes, reduced immunity
osteomyelitis and antibiotics
don’t start antibiotics until samples taken…
most common cause of osteomyelitis
s.aureus
collagen binding adhesin (cartilage)
fibronectin binding adhesins (foreign)
septic arthritis
usually hip or knee
usually just one
how does septic arthritis happen
membrane very vascualr
local cellular response
releases proteolytic enxymes and bacterial toxins
destroys cartilate
joint effusin
decreased blood supply (becomes so swollen it cuts it off)
most common cause of septic arthritis
s.aureus or strep
septic arthritis in under 3?
h. influenzae
gram negative septic arthritis?
IVDU pseudomonas
reactive arthritis is NOT
an infection
reactive arthritis may occur (EXAM)
after infectious diarrhoea
Chlamydia
Gonorrhoea
Hep B
NO BACTERIA TO CULTURE
prosthetic joint infection
within 3 months (early) or else late direct inoculation- skin type flora usually haematogenous if late biofilm multiple organisms not uncommon
COAGULASE NEGATIVE STAPH
biofilm
glood on a bone under a duvet
glycocalx
because not dividing- antibiotics won’t work.
tests for prosthetic joint infection
histology more important than culture.
treatment for prosthetic joint infection
surgical drainage +6 weeks Abx
replacement (1 stage or 2 stage) 2 stage better
Abx for bone infection
2-3 weeks septic arthritis
4 weeks kids
6-8 weeks adult osteomyelitis.
ultra clean ventilation
air changed 30 times an hour
fine filter to catch viruses
mycosis
infection caused by fungi