Microbiology Flashcards
What is Clinical Microbiology?
-is the in vitro diagnosis of diseases caused by bacteria, viruses, fungi, and parasites
-identified by culture, microscopy, biochemical, and genetic analyses
What are the three I’s of clinical microbiology?
- Isolate: select and differentiate by culture
- Identify: based on visual analysis, nutritional demands, and preferred environment, target sequences in the case of PCR
- Interpret: sensitivities and/ or resistance to drug therapy
specimen setup
- keep requisition orders and specimens together and work with one at a time
-check that names on orders match your printed labels
-see that requested tests were ordered correctly by the log-in staff
-be sure that all tests requested have an appropriate specimen
requisition subtleties
-many tests have a variety of pseudonyms (ex: fungal stain, calcofluor, KOH)
-be aware, specimens are frequently shared
What are the three biosafety cabinets
- Class I
- Class II A
- Class III
* class I and class II A are the most common hoods used in clinical micro
Class I Biosafety cabinet
-hoods provide a protected workspace for the workup of specimens such as urines and exudates
Class II A biosafety cabinet
-hoods provide a sterile environment for the workup of specimens incl. deep tissue and fluids
Class III biosafety cabinet
-hoods offer maximum protection for high-risk work involving BSL 3 and 4 agents such as MTB
What to know about biosafety cabinets: Class I
-negative pressure, ventilated cabinet usually with an open front
-minimum face velocity at work opening is 75 linear ft/min
-air leaving the cabinet is HEPA filtered back into the lab or outside
-can contain mixers and other equipment
-not optimal for work with sterile specimens
What to know about biosafety cabinets: Class II A
-inward airflow at work opening is 75-100 linear ft/min to protect personnel
-HEPA-filtered vertical laminar airflow for specimen protection
-air leaving the cabinet is HEPA filtered back into the lab or outside
-can contain mixers and other equipment
-highly recommended for work with sterile specimens
What to know about biosafety cabinets: Class III
-completely enclosed and gas-tight
-work inside the cabinet is conducted using the attached rubber gloves
-supply and exhaust air is multiplied HEPA-filtered into the lab or outside
-maximum protection for personnel, specimens, and environment
-necessary work with biosafety level 3 and 4 specimens, other hazardous agents
major anatomical categories
- sterile sites (incl. organs, bone, fluids)
-exudate sites (non-sterile incl. wounds, drainage, and sites with normal flora incl. skin, mouth)
-throat
-respiratory (includes sputum, BAL)
-urogenital (includes cervix, urethra)
-urine (includes voided, ileal loop, catheter, etc.)
-stool
-surveillance (MRSA, VRE, ESBL, and CRE)
Blood agar (BAP)
-aerobic media
-nonselective, grows most except Haemophilus sp.
Chocolate (Choc)
-aerobic media
-nonselective but excellent for Haemophilus sp. and Neisseria sp.
MacConkey (MAC)
-aerobic media
-selective for gram neg bacilli, differential for lactose fermentation