Microbiology Flashcards
Which are the two approaches used to identify microorganisms in clinical specimens?
Direct microbiological diagnosis and indirect microbiological diagnosis.
How are the infective conditions acquired during hospitalization called?
Nosocomial infections (HAI)
What does sterility refer to?
The elimination of all forms of life present onto a certain surface.
What do the Koch’s postulates establish?
The causative relationship between a microbe and a disease?
What is the classification of bacteria based on?
- Anatomical features
- Staining characteristics
- Metabolic properties
- Genetic analysis
- Antigenicity
Which are the different classes of bacteria that can be identified?
- Cocci
- Bacilli
- Coccobacilli
- Vibri
- Fusiform bacilli
- Spirilli
- Spirochetes
What is the gram staining based on?
The different permeability to stains provided by the difference in the thickness of the peptidoglycan layer.
Why are mycobacteria and mycoplasmas stained with the acid-fast techinque?
Because they respectively have an abnormal layer of peptidoglycans and no layer of peptidoglycans.
Which are the main roles of the external structures of bacteria?
They act as:
1. Permeability barrier
2. Adhesins
3. Enzymes
4. Protective structures
5. Antigen disguises
6. Endotoxins
7. Sensing proteins
Why is the cell wall essential for most bacteria?
It prevents osmotic lysis and provides sites for the attachment of drug components and viruses
Which is the most important peptidoglycan making up the cell wall?
Murein
What is a peptidoglycan composed of?
Repeating disaccharides of NAM and NAG associated with 4/5 amino acids:
1/2. vary among bacteria
3. Diamino aminoacids
4. D-alanine
5. Lengthens the cross-links
Which are the enzymes involved in the synthesis of peptidoglycans?
Transglycosilase, transpeptidase and carboxypeptidase.
Which are the drugs that target the enzymes involved in the synthesis of peptidoglycans?
Penicillin and beta-lactam antibiotics.
How can lysozyme disrupt the bacterial cell wall?
By cleaving the polysaccharide chain
What can we find in the cell wall of gram + bacteria?
Virulence proteins, teichoic acid and lipoteichoic acid
What is the composition of the cell wall of gram - bacteria?
Thin layer of peptidoglycans + outer membrane (its outer leaflet is composed of LPS)
Why are LPS important?
Provide permeability and stimulate innate immune responses by binding to PRRs (endotoxins).
What are flagella composed of?
Flagellin
What powers the bacterial flagella?
Proton motive force (chemio-osmotic potential)
What is the axial filament of spirochetes?
An inner flagellum
What is the difference between pili and flagella?
Pili are smaller and not coiled
What are pili composed of?
Pilin protein
What do type I and type II pili-mediated adhesion of bacteria to human cells cause?
Binding of platelets and fibrin to the bacteria, preventing phagocytosis, binding of fibrin to heart valves, and formation of blood clots
Why are F-pili important?
They allow extrachromosomal genetic exchange between bacteria
What are adhesins?
Proteins that bind specific receptors on host cells ensuring a better adhesion.
What are the capsule, S layer, and glycocalyx composed of and what is the difference between them?
Repesting oligosaccharide units of 2/4 monosaccharides that may contain acetic acid or piruvic acid.
Differ based on the quantity of their components and their location:
Capsule –> discrete, outside cell wall
Slime layer –> less discrete, in the matrix
Glycocalyx –> thin layer on the surface of bacteria growing in nature
What are pili composed of?
Pilin protein
What are the functions of the capsule?
- Antiphagocytosis
- Prevention of neutrophil killing
- Prevention of complement-mediated cell lysis
- Inhibition of PMN leukocyte migration
- Adhesion
- Toxicity
- Protection of anaerobes against oxygen
- Determination of colonial type: smooth, rough or mucoid
What happens in the quellung reaction?
Antibodies bind to the bacterial capsule allowing it to be visualized under microscope
Where and in what form can we find the DNA in a bacteria?
In the nucleoid, in form of a single chromosome
What is the importance of the extrachromosomal DNA?
It is not vital but it confers selective advantages, such as antibiotic resistance
Why is the lack of the nuclear structure important?
Because it allows transcription and translation to take place simultaneously
Why is bacterial genome different from the eukaryotic one?
It does not have histones and also have fewer non-coding regions and introns
Which subunits make up the bacterial ribosome?
30S + 50S = 70S
What is the bacterial cytoplasmic membrane composed of?
Phospholipids. It lacks sterols which are replaced with terpenoids (also called isoprenoids)
What are granular inclusions?
Storages of ions, metabolites and vitamins.
What does it mean that the bacterial cytoplasm has glass-like properties and how can it be fluidised?
It means that it can change from a liquid-like state to a solid-like state in a component size-dependent fashion. Cell metabolism increases its fluidity.
Where does bacterial chromosome replication starts?
At its origin, attached to the cell wall
What are pili composed of?
Pilin protein
What is the generation time and what defines it?
It is the interval required for a cell or an entire population to divide and it is defined by temperature, pH, nutritional conditions, medium, etc.
What are pili composed of?
Pilin protein
Which are the 4 bacterial growth stage and what chracterizes them?
- Lag phase –> number of cells stable, protein synthesis occurs
- Log phase –> exponential growth
- Stationary phase –> growth rate = death rate
- Death phase –> growth rate < death rate
What are endospores and why are they needed?
They are bacterial structures which enable bacteria to stay alive, without replication, in non favourable conditions and still infect other organisms
What is germination?
It is the proccess thorugh which, under favourable conditions, an endospore can germinate back into a vegetative cell
Why are antibiotics against bacterial DNA selectively toxic?
Because bacterial DNA is packed differently from the eukaryotic one
How can a new genotype be formed?
DNA mutations or genetic exchange
Which are the 2 ways in which genetic exchange can occur?
Recombination or transfer
Which are the 2 types of recombiantion?
Homologous and non-homologous
Which are the 3 transfer mechanisms?
Transformation, transduction and conjugation
What is the competence state of a bacteria?
Is a state of increased cell wall and cell membrane permeability, necessary for transformation to occur. Selected factors and DNA binding proteins are also available in this state.
What is the transformasome?
Is a particular organelle of gram - bacteria that sequesters the uptaken DNA and trasnfers it within the cell.
What occurs during transduction?
DNA is transferred from a cell to another by a bacteriophage
What occurs during transformation?
Bacteria ingest free DNA from the environment and incorporate it in their genome
What is lysogenisation?
Is the process through which a bacteriophage (prophage) injects its genetic material in a bacterium and this is integrated in the bacterial genome.
What is the difference between generalized and specific transduction?
In generalized transduction the phage transduces random sequences of bacterial DNA insted of the viral one.
In specialized transduction the phage transuces specfic sequences of bacterial DNA close to the site of attachment of the prophage.
What are defective phages?
Phages whose essential viral genes have been replaced by host bacterial DNA, therefore cannot mature and replicate, but can still infect other cells.
What occurs during conjugation?
ssDNA from the F plasmid of a donor cell is tranferred into another cell, which lacks the plasmid, through a pilus. DNA Polymerase then synthesizes a complementary strand in both.
What is an episome?
A plasmid able to integrate with the bacterial chromosome after transfer from the host cell.
Which important characteristics are given to the bacteria by the genes found in the plasmid?
- Surface antigens
- Metabolica activities
- Production of antimicrobial agents
- Virulence factors
- Drug resistance traits
Why certain strains of Staphylococcus Aureus are penicillin resistant?
Because of the expression of the genes encoding for the beta lactamase enzyme when penicillin is detected in the environment
What is the R factor?
Plasmids of gram - bacteria that confer antibiotic resistance
Why excessive administration of antibiotics should be avoided in therapy?
Because certain strains are able to change their expression of the antibiotics binding sites when there is a high concentration of antibiotics in the environment
Which are the 3 types of ecological relationships that a bacteria can establish?
Microbial interactions, host-parasite interactions and environmental interactions
How can we divide ecological interactions?
Symbiosis, Mutualism, Commensalism and Parasitism