Microbiology Flashcards
What are the 5 ways antibiotics are commonly misused?
- No infection present
- Selection of incorrect drug
- Inadequate or excessive dose
- Inappropriate duration of therapy
- Expensive agent used when cheaper is available
What are common adverse events associated with Abx reported in upto 5% of hospital patients?
- GI upset
• Fever & rash
• Renal dysfunction
• Acute anaphylaxis
• Hepatitis
What types of carbapenemase isolates are increasing?
OXA-48, NDM, some KPC and VIM
How did Abx resistance change from 2015-19?
An increased of 32.5% in resistant key pathogen blood stream infections. And 2.4% increase in the PROPORTION of resistant key pathogen BSI (meaning 21/100 would not be treated by Abx).
What does the choice of appropriate Abx depend on?
Choice depends on:
H - host characteristics
A - Antimicrobial sensitivities of the
O - Organism itself and also the
S - site of infection
NOTE: also consider results from Ix culture and local policies and cost
What is the MIC?
Minimum concentration of Abx needed to treat the infection
When is an Abx indicated as helpful depending on the MIC and breakpoint?
When MIC< Break point
Ideally, when should you collect specimens for culture?
Collect specimens for culture prior to starting
antibiotics
How do we identify the pathogen?
Gram stain:
• CSF
• Joint aspirate
• Pus
Rapid antigen detection
• Immunofluorescence
• PCR
What will local concentration of the Abx be affected by?
- pH at the infection site
• Lipid-solubility of the drug
• Ability to penetrate the bloodbrain barrier (CNS infections)
What route of administration should you choose for Abx?
i.v.: Serious (or deep-seated) infection
p.o.: Usually easy, but avoid if poor GI
function or vomiting
Different classes of antimicrobial have
different oral bioavailabilities
i.m.: Not an option for long-term use
Avoid if bleeding tendency or drug is
locally irritant
Topical: Limited application and may cause local
sensitisation
What duration of course should you use for Abx?
N. meningitidis meningitis 7 days
Acute osteomyelitis (adult) 6 weeks
Bacterial endocarditis 4-6 weeks
Gp A Streptococcal pharyngitis 10 days
Simple cystitis (in women) 3 days
By which mechanism is ESBL E. coli resistant to ceftriaxone?
1) Impaired uptake of Abx
2) Enzyme inactivation of Abx
3) Alteration of target of Abx
4) Enhanced efflux of Abx
Answer = 2) Enzyme inactivation of Abx
What are the commonest groups of B lactam Abx?
- Penicillins
- Cefalosporins
- Carbapenems
- Monobactams (not used much but may increase usage due to resistance)
Which mechanism mediates flucloxacillin resistance in S. aureus?
1) Impaired uptake of Abx
2) Enzyme inactivation of Abx
3) Alteration of the target
4) Enhanced efflux of the Abx
Answer: 3
Not 2 as flucloxacillin was designed to be stable to B lactamase from S. aureus. Mechanism is an altered penicillin binding protein.
What gut infection would you give oral vancomycin for?
A C. diff infection
What if a patient had a C. diff gut infection and it was colonising their hip?
Give oral vancomycin and IV vancomycin
A patient has grown a fully susceptible E. coli in their urine. Which of the following is the narrowest spectrum agent you should de-escalate to?
1) Amoxicillin
2) Ceftriaxone
3) Co-amoxicla
4) Meropenem
5) Piperacillin/tazobactam
1) Amoxicillin
2) Ceftriaxone
3) Co-amoxicla
4) Meropenem
5) Piperacillin/tazobactam
Answer = 1 (the others are unnecessarily broad)
When we treat influenza, we dont use HAART like technique i.e. use different antivral drugs together. True or false?
True
The influenza vaccine given to those at greater risk of complications from flu in the UK is…
A purified fraction containing HA and NA of an inactivated virus
500,000 people die each year from seasonal influenza. The number of deaths from COVID worldwide since January 2020 is…
6 million people
A covid patient in ITU is most likely to benefit from…
Dexamethasone - a steroid (Remdesavir won’t help at this stage)
What is a bacterial infection most likely to show in the blood results?
Increased CRP Increased procalcitonin (PCT)
What are fungi?
a) Eukaryotes with chitinous cell walls and ergosterol containing plasma membranes
b) Small protein packages containing genetic material, some also contain enzymes
c) Single-celled organisms with prokaryotic cells
d) Single-celled organisms that are either free-living or parasitic
e) An organism that lives in or on another organism and benefits by deriving nutrients at the others’ expense
a) Eukaryotes with chitinous cell walls and ergosterol containing plasma membranes
What are the 2 main groups of fungi?
Yeasts - reproduce by budding and are single-celled organisms
Moulds - reproduce by growing and extending and are multicellular hyphae
What is the most common of fungal infections in humans?
a) Candida spp
b) Aspergillus spp
c) Cryptococcus spp
d) Dermatophytes
e) Pneumocystis jiroveci
a) Candida spp
You are on the medicine for the elderly ward. The nurse bleeps you about a patient: “Doctor please come and see patient A2, they are complaining about their painful mouth and their tongue looks strange.”
What does the patient have?
Oral candidiasis
The nurse on the medicine for the elderly ward says a patient has a rash on their groin, they ask if you can come and look at it.
What does the patient have?
Candidal vulvovaginitis
You are the surgical FY1 on the ward. You receive a bleep from the microbiologist on call. “I’ve had a blood culture come back as positive for Mr C. It’s a yeast - please review the patient and call me back.”
Which one is the yeast and which is the mould?
1) Yeast - budding
2) Mould - growing and extending
What are the RF for a candidaemia?
Burns
Long lines
Malignancy - haematological
Complicated post-operative period
What invasive candida infections do you treat with Ambisome and Voriconazole?
1) CNS infections - disemination/trauma/surgery
2) Endocarditis - abnormal/prosthetic valves/long lines
3) Bone and joint infections - dissemination/trauma
How are cryptococci classified?
Serotypes A&D - these affect immunodeficient patients (Cryptococcus neoformans)
Serotypes B&C - these affect immunocompetent patients (Cryptococcus gatti)
A hospital in london makes the headlines for harbouring a pigeon infestation within one of their wards. What is the fungi that patients are at risk from?
Cryptococci
What type of ink is used to stain cryptococcus disease in this patient?
India ink - used to stain CSF
What is the most common mould in UK clinical practice?
Aspergillus
What microorganism is this a culture of?
Aspergillus - you can see the hyphae formation and extension
You are the FY1 on a respiratory ward. Your consultant has referred a patient who is experiencing haemoptysis and weight loss. PMHx includes treated pulmonary TB. An X-ray is completed. Explain what has happened.
Aspergillus has colonised the preformed cavity within the lung forming an aspergilloma - shown by the area of increased consolidation within the cavity.
Further Ix needed: Sputum sample + MCS Ag testing
Aspergillus Ab testing
Galactomannan
Blood culture + histology
Mx: Voriconazole, Ambisome (for atleast 6/52)
You are the FY1 on the renal team. You have been asked to review a patient who has a cough and SOB. They desaturate rapidly when they start to walk.
You look at their lung X-ray. What is the likely diagnosis?
Pneumocystic jiroveci pneumonia
Why might antifungals targeting the cell membrane might not work for a PCP (pneumocystis pneumonia)?
Because pneumocystic jiroveci lacks ergosterol within its cell wall/membrane
What does this picture show?
Rhinocerebral/CNS mucormycosis - chemosis
What is this condition and what microorganisms cause it?
Onchomycosis - caused by dermatophytes fungi - Trychophyton spp, Epidermophyton spp, Microsporum spp.
What is this condition and what microorganism causes it?
Pityriasis versicolor - Malssezia furfur
What are the side effects associated with anti fungal drugs?
Azoles - abnormal LFTs
Polyenes (amphotericin) - nephrotoxicity
Echinocandins - relatvely innocuous
Pyrimidine analogues - blood disorders
Which of the following viruses is most contagious?
a) ebola
b) HIV
c) Hepatitis C
d) SARS
e) Measles
e) Measles
What is the R0?
The R0 is the number of people (on average) that one sick person will go on to infect. The R0 for measles is 18. If the R0 is reduced to <1 then transmission is halted.
What is the herd immunity threshold for measles?
HIT = 1-(1/R0)
HIT = 1-(1/18)
= 94%
94% of the population must be vaccinated for this to stop the spread of disease and confer benefit to those not immune to the virus.
What is an inactivated vaccine?
A whole microorganism destroyed by heat/chemicals/radiation/or Abx.
Examples include Influenza vaccine, Cholera vaccine and Polio vaccine.
Vaccination with a live vaccine should be deferred if…
a) Patient has had Ig within the last 3 months
b) Patient is receiving systemic, high dose steroids
c) The patient is a premature infant
d) The patient is breastfeeding
e) The patient has a family hx of epilepsy
a) Patient has had Ig within the last 3 months
and
b) The patient is receiving high dose, systemic steroids
What are attenuated vaccines?
These are whole organism vaccines, modified to be less virulent. Examples include: measles, mumps, rubella and yellow fever vaccines.
What is a toxoid vaccine?
Inactivated toxic components of the microorganism/attack strategy. Examples: tetanus and diptheria.
What is a subunit vaccine?
A vaccine created from a protein component of the microorganism or a synthetic virus-like particle. They lack the viral genetic material and are unable to replicate and cause disease. Examples include hepatitis B and HPV.
When is a child’s first vaccination and what are they given?
1st vaccination may be following birth if high risk for TB - give BCG
Then for others 1st vaccination is at 8 weeks/2 months.
They are vaccinated for: DTP + polio + Hib + Hep B
Pneumococcal
Rotavirus
Meningitis B
What are the advantages of inactivated vaccines?
Stable
Induce response to multiple antigens
Constituents are clearly defined
Unable to cause infection - can be used in the immunocompromised/suppressed/deficient
What are the disadvantages of inactivated vaccines?
Need several doses
Local reactions are common
Adjuvant is needed
Shorter lasting immunity
What are the advantages of live attenuated vaccines?
Induce response to multiple antigens
Produce a strong immune response
What are the disadvantages of live attenuated vaccines?
Cannot be given to an immunocompromised pt
Can cause illness
Potential for contamination?
What are the advantages and disavantages of toxoid vaccines?
Adv: Safe to use in immunocompromised/suppressed/deficient individuals
Stable
Long-lasting immune response
Disadv: Local and systemic reactions
May require several doses and adjuvant to work
What are the advantages and disadvantages of a subunit vaccine?
Adv: Does not cause disease - suitable for immunocompromised individuals
Disadv: protein must be picked carefully
Often needs boosting