Microbial genetics Flashcards
Extra chromosomal unit of heredity. It carries with it code for toxicity and antibiotic resistance. Replicates on its own
Plasmid
What are the 3 components of DNA nucleotides
Phosphate group, deoxyribose sugar, adenine-guanine-thymine-cytosine bases
Functions as a structural part of nucleic acid
Phosphate
Function is to express genetic information
Nitrogen bases
This RNA is the site of protein synthesis
rRNA
This RNA carries amino acids to the ribosome during protein synthesis
tRNA
Template for protein synthesis
mRNA
2 parental strands of DNA are copied into 2 daughter strands
DNA replication
Each cell receives 1 parental strand and 1 daughter strand
semiconservative replication
Enzyme that synthesizes 2 nucleotide strands
DNA polymerase (POL III)
Enzyme that removes any mistaken base pairs
DNA exonuclease (POL I)
Enzyme that seals gaps and joins the 2 strands together
DNA ligase
Group of protein that recognize the origin of replication
DNA A Protein
Unwind the double helix ahead of replication fork
helicase
Remove supercoils that interfere with the further unwinding of the double helix
DNA topoisomerase
Leading strand is synthesized continuously in a _____________ direction by DNA polymerase
5’ to 3 ‘ direction
Synthesizes a short RNA primer which is extended by DNA polymerase III
RNA polymerase (primase)
Enzyme responsible for making mRNA
RNA polymerase
Helps the core enzyme attach more tightly to specific deoxyribonucleotide sequence of promoter region
sigma factor
Binding of RNAP holoenzyme to template at promoter site
Template binding
First nucleotide (usually a purine) associates with initiation site on B subunit of enzyme
Initiation
Successive residues are added to 3’ terminus with sequence dictated by base pairing rules
Elongation
This must occur to provide access for appropriate base pairing
DNA unwinding
Recognizes the termination signal. An ATP-dependent RNA-DNA helicase
rho factor
start codon for bacteria
formyl methionine
blocks assembly of the ribosome during initiation
streptomycin
blocks peptide bond formation during elongation
Chloramphenicol
blocks the second site on the ribosome during elongation
Tetracycline
blocks translocase during elongation
Erythromycin
What is the source of nutrient of bacteria
Glucose
the site on a DNA molecule that carries the code for a certain cell function
Gene
Process that occurs when a sufficient number of bacteria are present and producing a specific small molecule, virulence, and other genes are turned on
Quorum sensing
This protein prevents gene expression by binding to a specific DNA sequence called the operator, blocking the RNA polymerase from initiating transcription at the promoter sequence
Repressor protein
Binds to a specific DNA sequence and assists the RNA polymerase in the initiation steps by an unknown mechanism
Apoinducer
Responsible for the degradation of the sugar lactose
lactose (lac) operon
Indicate low glucose levels and the need to utilize alternative metabolic pathways
Increased cAMP levels
Contains the structural genes necessary for tryptophan biosynthesis and is under dual transcriptional control mechanism
tryptophan operon
example of operon that exhibits repression
Tryptophan
any change in the base sequence of the DNA
mutation
type of mutation that involves the addition or deletion of 1 or more bases
Frame shift mutations
type of mutation that involves one base change in DNA
point mutation
Single base substitution in the 3rd base nucleotide position of a codon. NO change in amino acid
Silent mutation
Single base substitution in 1st or 2nd base nucleotide position of a codon. Results in change in amino acid
Missense mutation
single base substitution that yield a stop codon
Nonsense mutation
Example of alkylating agents
Formalin, nitrogen, mustard, ethylene oxide
chemical mutagen that mimics a nitrogen base
base analogs
Example of intercalating agents that inserts into DNA and pushes bases apart. It is a chemical produced by peanut and grain molds
Aflatoxin
Physical mutagen that causes the formation of t=t dimers
nonionizing radiation
Damages DNA by causing the formation of free radicals leading to mutations.
Ionizing radiation
Process by which bacteria take up fragments of naked DNA and incorporate them into their genomes
Transformation
A mating process between a donor F+( bacteria with fertility factor= plasmid) and an F -recipient cell
Conjugation
Big chunks of DNA that randomly excise and relocate on the chromosome
Transposons (jumping genes)
Transposition causes antibiotic resistance in this bacteria
Staph. aureus - methicillin resistant Staphylococcus aureus strain
the transfer of genetic material from donor bacteria to recipient bacteria via transducing agent
transduction
Type of transduction if the phages in question transfer particular genes ( usually those adjacent to their integration sites in the genome)
specialized transduction
Type of transduction if incorporation of DNA sequences is random bacause of accidental packaging of host DNA into the phage capsid
Generalized transduction
Incorporation of extra chromosomal DNA into the chromosome
Recombination
Recombination that occurs between closely related DNA sequences and generally substitutes one sequence for another
Homologous (legitimate) recombination
Recombination that occurs between dissimilar DNA sequences and generally produces insertions or deletions or both
Nonhomologous ( illegitimate) recombination
Manipulation of the DNA to change its structure
Genetic engineering or recombinant DNA technology
What are basic components of genetic engineering
cloning and expression vectors, DNA sequence, enzymes, DNA ligase
Engineered to have a site for insertion of foreign DNA
cloning vectors
Used to cleave DNA reproducibly at defined sequences
Restriction enzymes
Ligation of the vector with the DNA fragments generates a molecule called __________
recombinant DNA
The DNA to be cloned can be obtained by purification of chromosomal DNA from cells, viruses, other plasmids or selective amplification of DNA sequences by a technique known as _______
polymerase chain reaction
cuts both strands of the DNA in a gene so that the gene will be disabled
Cas 9 protein
Uses a single, all purpose enzyme called cas 9 to do the slicing
CRISPR system
+ glucose; - lactose
operon off
- glucose; + lactose
operon on