microbial ecology Flashcards

1
Q

ecosystem

A

community of organisms and their natural environment

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2
Q

population

A

group of organisms in the same species in the same space at the same time

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3
Q

guild

A

metabolically similar organisms that exploit the environment in the same way

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4
Q

organisms that consume chemicals as energy source

A

chemotrophs

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5
Q

organisms that consume light as energy source

A

autotrophs

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6
Q

organisms that use organic sources for electron donation (and name an example of an organic source)

A

organotroph; glucose

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7
Q

organisms that use inorganic sources for electron donation (and name an example of an inorganic source)

A

lithotroph; NH3, S0, H2

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8
Q

organisms that use organic sources for carbon source (and name an example of an organic source)

A

heterotroph; glucose

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9
Q

organisms that use inorganic sources for carbon source (and name an example of an inorganic source)

A

CO2

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10
Q

electron acceptor examples (anaerobic or aerobic)

A

O2 (aerobic), NO3, SO4, FeIII

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11
Q

What type of respiration to e. coli use? what do they optimally use?

A

aerobic = optimal; can also use fermentation

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12
Q

What is the difference in respiration between chemoorganotrophs and chemolithotrophs?

A

organic compound allows for glycolysis, TCA cycle, and ETC, while inorganic compounds allows only for ETC

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13
Q

what form of metabolism would a microbe exhibit if it’s helpful for C,N,S cycling

A

chemolithoautotrophy (they are NH3-oxidizers, NO2-oxidizers)

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14
Q

what form of metabolism would an organism exhibit if it’s a primary producer?

A

photolithoautotrophy

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15
Q

what are the 4 main groupings of phototrophic bacteria? what are their oxygen requirements??

A

purple sulfur/non sulfur, green sulfur/nonsulfur, heliobacteria - anoxygenic
cyanobacteria - oxygenic

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16
Q

main areas of study in microbio

A

primary production, decomposition, biogeochemical cycling

17
Q

what are the necessities of growth

A

resources, and physiochemical conditions

18
Q

types of extremophiles

A

psychrophiles, thermophiles, hyperthermophiles,

19
Q

niche

A

functional role of an organism within an ecosystem; combined definition of physical habitat, functional role, and interactions of microorganisms occurring at a given location

20
Q

microenvironment

A

where a microorganism lives, and metabolizes within its habitat - a v small region of space, fractions of millimeters in diamater

21
Q

what is the difference between microbes in lab vs life?

A

life:

  1. entry of nutrients is intermittent, so there is a feast or fast existence. this means that there is plenty of accumulations and reserves, and when there is nutrients, there are v high levels of growth, but extended periods of growth are v rare in nature
  2. distribution of resources in nature is often non-uniform
  3. competition for resources is likely
22
Q

biolfilm

A

a community of organisms organized in a community adhered to a surface, embedded in a matrix of organic polymer (EPS); can organise EPS so there are water channels through

23
Q

advantages to biofilm mode

A

protection for toxins, predators, immune system cells; ability to remain in favourable niche; cooperative interactions possible; nutrient trapping

24
Q

disadvantages to biofilm mode

A

highly competitive, localised biomass can be preyed upon, infected by viruses

25
Q

human-scale problems resulting from biofilm

A

pipe clogging; corrosion of pipes; high microbial amounts in potable water distribution system; increased drag on ship hull; periodontal issues; surgical issues (infection)

26
Q

microbial mat defintion + where are they found + 1 example

A

specialised microbial communities composed mainly of photosynthetic and chemolithotrophic bactera; extremely thick; found in hot springs and other extreme environments; cyanobacterial mats are a complete ecosystem

27
Q

different interactions between microbial populations

A

negative-effect interactions, positive-effect interactions, symbiosis

28
Q

different types of negative-effect interactions

A

antagonistic and competitive
antagonist - specific inhibitor may impede growth/metabolism of others (antibiotic release or lactic acid production - lowered pH would affect a microbes who like a more basic env)
competitive - outcome depends on innate capabilities of nutrient uptakes, metabolic rates

29
Q

different types of positive-effect interactions

A

cooperative interactions - interacting microbes must share same/nearby environment; two types - syntrophy and complementary metabolic interactions
symbiosis: intimate relationship between 2 or more organisms that share a particular ecosystem

30
Q

mutualism

A

type of symbiosis where both species benefit

31
Q

parasitism

A

type of symbiosis where only one species benefits, other is harmed

32
Q

syntrophy

A

microorganisms carry out interactions neither can do on their own
types op positive-effect interaction between microbes

33
Q

complementary metabolic interactions

A

microorganisms carry out interactions using the products or byproducts of another organism
eg nitrification
type of positive-effect interaction between microbes

34
Q

symbiosis in e.coli & ur gut

A

can be damaging or beneficial to the host

mutualism: you provide them w a protected environment n nutrients, they give you vitamin K
commensal: you can get vitamin K elsewhere
parasitic: under the right conditions they can cause disease if they gain access to body tissues

35
Q

commensal

A

type of symbiosis where one species benefits, the other is unaffected