Methods In Modern Neuroscience Research Flashcards

1
Q

What are 5 ways in which we can study the brain?

A

lesions - these can be used to silence neurones in the brain

Morphological and anatomic studies - studying the connections between neurones

FMRI and electrophysiological recordings

Modelling and theoretical simulations

Physiological methods and illusions.

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2
Q

Examples of physiological experiments we can do?

This is just tests on creatures..

A

We can use primates and humans

Lower vertebrates - zebrafish

Invertebrates - drosophila

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3
Q

Why are genetic studies on humans and primates hard to do?

A

They have long lifespans

Instead we choose organisms with shorter life spans to do genetic experiments such as drosophila

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4
Q

What is the issue with using drosophila for models for genetics?

A

Although the short life snap

They are small and also their nervous system may differ significantly to ours

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5
Q

Once you have a model organism, what questions should we ask ourselves when studying their brains?

A

We should ask what areas of the brain are involved in the processes we want to observe e.g. the visual system.

We then need to ask how we could observe these areas - such as with induced fMRI, lesions, multi-electrodes recordings in different brain areas.

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6
Q

When can we study the affect of lesions in human brains in a humane way? What is an example?

A

We can do this after subjects have suffered from neurodegenerative disease - which cause lesions themselves

There are examples of how lesions can affect object recognition and colour perception. In individuals. Seen when a woman who had a stroke.

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7
Q

What is fMRI good for studying? And what experiment can we do to test this?

A

This is good for studying the brain areas involved in visual processing

To test we can move dots on a screen left or right and watch how the brain activity changes

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8
Q

What are the methods to study new neuronal types?

A

Describe morphology - look at connections in the brain already between neurones)
Map these connections
Describe the activity of these neurones
Then engage in theoretical study.

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9
Q

The process - how to study neurones via mapping connections

A

Stimulate one neurone and record the other to see if the neurones are connected - but this process would require billions of batches

Use electron microscopy - you get a slice of the brain and do electron miscroscopy. You take continuous slices until you get a 3d stack. (Live brain)

You then look at neurones firing and see what affects firing rate.

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10
Q

What were calaj and Golgi’s experiments to label cells?

A

They used staining such as the Golgi stain. Note this want just done on the Golgi!

Through this method they stained the Golgi and other organelle

This method ensured neurones were labelled in a sparse way

You can see individual neurones

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11
Q

What did Cajal use Golgi staining to observe and map?

A

Retinal cells

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12
Q

What is the problem of using the Golgi staining method?

A

You rarely stain individual neurones

You cant combine electrophysiological (studying electrical activity) and morphological (looking at connections between neurones ) assessment on the same cell.

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13
Q

How do you carry out electrophysiological assessments on the brain?

A

Through sharp electrode recording - this helps to stimulate regions

You fill a needle and electrode with electrolyte such as potassium chloride

You insert this needle gently into the cell

When you stimulate the neurones with these electrodes it causes the membrane potential to decrease.

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14
Q

sharp electrode recording - this helps to stimulate regions In the brain

How can this be used in drosophila’s brains

A

You can stimulate light receptors with the electrode and ground electrode

You put a recording receptor in a hole in the head

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15
Q

Disadvantage of using sharp electrode recording to stimulate and record regions

A

There is limited possibility to control membrane potential

You can’t measure single channels as you look at potential of entire membrane

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16
Q

Patch clamp tip compared to sharp electrode?

A

Slightly thicker

17
Q

Patch clamp method?

A

Same as the one with louises first lecture. Core pharm

Just remember the solution in the patch clamp tip should be POTASSIUM chloride to measure the intracellular Vm(as potassium is higher inside the cell.) This mimics the intracellular environment.

If you want to study the Vm outside of the cell you would have SODIUM chloride as sodium is higher outside the cell than inside.

And remember when the electrode tip meets the cell membrane this causes a gigaseal = very high resitance.

18
Q

How can we use fluorescent dyes to label neurones when the patch clamp technique has left the cell in the whole cell configuration?

A

When the cell is in the whole cell configuration you can put a dye into a glass electrode

This can label ENIRE neurones - remember neurones are CELLS! And neuronal cells in the same pathway are next to each other. They are linked. Thus labelling one labels the rest. Hence why stimulating one neuronal cell stimulates the rest.

Note as the dye isnt soluble in water it doesn’t usually go through a cells plasma membrane. However in whole cell configuration it allows the dye in

19
Q

What is important to realise about neuronal cells? And why is this important for considering dyes?

A

Neuronal cells in a particular pathway are all linked!!

You shouldnt think they are free floating, instead they are linked together!!! They are next to each other

Thus is one cell is dyed with fluorescent dye, then this dye can spread along the neurone and label an entire neurone.

Hence why stimulating one neuronal cell stimulates the rest.

20
Q

Issues with fluorscent labelling cells?

A

Cant label many cells

You have limited ability to label specific cells

Limited abilities to label cellular compartments

Limited abilities for live labelling

21
Q

Green fluoresenct protein? What is the protein? What stimulates it?

A

This protein is just alot of beta sheets

It is typically stimulated by blue light