Membranes and lipids- membrane proteins and carbohydrates, membrane transport, extracellular and intracellular signalling, cholesterol and lipoproteins Flashcards
Lipid bilayer
- Hydrophilic molecules dissolve in water- contain charged groups or uncharged groups that form electrostatic interactions or HB with water molecules
- Hydrophobic molecules are insoluble in water- most of their atoms are uncharged and nonpolar- can’t form energetically favourable interactions with water
- In water, hydrophobic molecules force adjacent water molecules to reorganise
- If hydrophobic molecules (or hydrophobic part of molecule) cluster together a small number of water molecules are affected-lower free energy cost
Fatty acids
Fatty acids vary in chain length, DB number, DB position and hydroxylation. Two fatty acid chains in a lipid can be different in length.
Nomenclature:
XX:Y n-y
- XX denotes the number of carbons in the chain.
- Y indicates the level of chain saturation (the number of double bonds).
- n-y is the position of the first double bonded carbon counting from the methyl terminus (first DB is from the first C)
Diversity of membrane lipids
atoms. This lipids tail are relatively straight.
Unsaturated lipid tails: Fatty acids in lipid tails that contain one or more double bonds between adjacent carbon atoms. Unsaturated lipid tails can have a cis double bond - makes a 30o kink or a trans double bond that does not affect their structure.
Differences in length and saturation of the fatty acid tails influence how phospholipids pack against one another (membrane rigidity).
Membranes contain 3 lipids
- Glycerophospholipids (phospholipids)
- Sphingolipids
- Sterols
Glycerophospholipids
- Chemical diversity arises from the combination of two fatty acids, linkage at SN1 position and the head group
- SN1 fatty acid is usually saturated or monounsaturated
- SN2 fatty acid is more often monounsaturated or polyunsaturated (multiple double bonds)
- Fatty acid linkage by an ester bond
- Glycerol is derivatised to glycerol-3-phosphate
Sphingolipids
- Sphingolipids are built on a sphingoid base, N-acyl chain and head group.
- Most common sphingolipid is sphingomyelin (SM) that has a PC headgroup
- The amide group has the ability to form HB- allows interactions of sphingolipds with cholesterol or polar parts of proteins
- The N-acyl chains of sphingolipids tend to be more saturated and can be longer than the acyl chains of glycerophospholipids
- An acyl chain is attached via amide linkage
- Sphingolipids in mammals usually have saturated acyl chains (up to 24 C that enable them to pack tightly)
- Don’t have ester bonds
- Both tails are saturated
Glycosphingolipids (Glycolipids)
- Complex glycosphingolipids have different oligosaccharides as head groups. Their structures are composed of various building blocks (mainly sugars)
- Glycosphingolipids are found exclusive in the outer leaflet of the membrane
- Small percentage of the outer leaflet- 5%
- In the plasma membrane, sugar groups are exposed at the cell surface
- Important role in interactions of the cell with its surroundings (cell-cell adhesion)
- Allow membranes to act as recognition sites for certain chemicals
Sterols
- Have a hydroxyl group and a hydrocarbon tail
- Cholesterol most common sterol in animal. Ergosterol is found in yeast and fungi membrane. Sitosterol and stigmasterol are found in plants.
- Its size and shape allows cholesterol to interact with pockets in membrane proteins
- Its presence increase thickness, packing and compressibility of membranes while it decreases mobility of lipids and proteins
Cholesterol
- Due to shape it can align better with saturated side chains e.g. with sphingomyelin
- Interactions with POPC- its OH group is not buried in the complex
- Interactions with sphingomyelin- a HB is formed between the OH group of cholesterol and the NH group of the sphingolipid
- The OH group of cholesterol is masked by the polar head of sphingomyelin. Make the membrane thicker due to close packing
Membrane curvature
- The relative size of the head group and hydrophobic tails of lipids affect the shape of the lipid and the spontaneous curvature of the membrane
- The negative spontaneous curvature of PE leads to bilayer-disrupting properties, which might promote processes that involve the generation of non-bilayer membrane intermediates, such as fusion
- PIP has an inverted-conical structure
- Negative and positive charge important- when trying to separate and fuse together
Types of membrane curvature and phospholipid
Cylindrical- PC, PS
Conical-PE, PA
Inverted-conical- Lyso-GPLs and phosphoinositides
Lipid diversity- two types
- Chemical/structural- defines specific properties of lipids
- Compositional diversity between tissues, organelles and leaflets within the same membrane- affects the collective behaviour of lipids
Asymmetry
- Erythrocyte membrane has a complex lipid composition
- 50% cholesterol
- High conc. of PC and SM lipids in the outer leaflet
- High conc. of PS and PE lipids in the inner leaflet
- Lipid asymmetry is functionally important.
- Phosphatidylserine in animal cells translocate to the extracellular monolayer when such cells undergo cell death, or apoptosis. This acts as a signal to neighbouring cells, e.g. macrophages, to phagocytose the dead cell and digest it
- The movement of the PS lipids occurs via scramblases
- Glycolipids are orientated towards the exterior of the cell
- Second messengers in signalling pathways are orientated towards the interior of the cell e.g. hydrolysis of PI(4,5)P2 , allows to recruit membrane protein for the formation of secondary messengers diacylglycerol (DAG) and inositol-1,4,5-triphosphate (IP3)
- Lipid interdigitation occurs because of the lipid length asymmetry in membranes. Interdigitation can couple the two leaflets together and decreases the lipids thickness
Lipid movement
- Rotational- the spinning of a lipid around its axis. Doesn’t alter its position but affects its interaction with neighbouring molecules.
- Lateral (sideways)-Neighbouring lipids exchange places. It allows lipids to change position within a bilayer leaflet.
- Transverse- Exchange of molecular between leaflets. Lipids can move across a bilayer of membrane spontaneously by transverse diffusion or their translocation can be mediated by proteins (unidirectional or bidirectional). Protein-mediated lipids translocation may require the input energy e.g. ATP hydrolysis. Some proteins are relatively nonspecific, whereas others only translocate specific lipid species. P-type flippases carry out inward movement of lipids; ABC proteins mediate outward movement of lipids. Scramblase perform non-specific Ca2+ -dependent randomisation of lipids across the bilayer.
Need proteins to tell lipids to change leaflets- examples
P-type flippase- form outside to inner side of cell. Require energy from ATP.
ABC flippase- flip from inner to outside. Require energy from ATP.
Scramblase- needs calcium to change- Can move from outer to inner and inner to outer.
Spontaneous- no energy needed
Lipid phases
When a membrane is in a lamellar phase it can be in the following phases:
1) lamellar liquid crystalline (liquid disorder)
2) solid gel- move slow as very tight
3) liquid-ordered- well packed- lipids can still move fast
1) lamellar liquid crystalline (liquid disorder): In this phase lipid e.g. glycerophospholipids that have unsaturated tails are not well packed and thus the membrane is more fluid and lipids can move fast in the bilayer.
2) solid gel: Sphingolipids have long saturated and pack more tightly, adopting the solid gel phases. Lipids can’t move fast in the membrane.
3) liquid-ordered: the presence of cholesterol with lipids with saturated tails e.g. SM results in a lipid ordered domain (raft). Well packed but lipids can still move fast in the membrane.
How is the membrane organised?
- The Fluid Mosaic Model (old model): The bulk of the lipids forms the bilayer providing the solvent for embedded proteins.
- Most proteins are inserted in the membrane (integral proteins), peripheral proteins also exist.
- The bilayer is fluid – lateral mobility of lipids and of some proteins. It is mosaic in the sense that proteins are scattered across it.
- The Fluid Mosaic Model emphasises the fluidity of the bulk lipids allowing random diffusion.
New model:
- Possibility of lateral (more) organisation in membranes, e.g. signaling receptors.
- The concept of membrane domains or rafts. Certain proteins can come together to form a domain or raft within the membrane which interact with certain lipids. This model suggests that in an eukaryotic plasma membrane there will be a large number of such domains.
- These domains are enriched in cholesterol and sphingomyelin. Lipid ordered phase.
- Proteins are either excluded or included in the raft regions.
Lipid droplets what are they?
- Lipid droplets are storage organelles that help to maintain the lipid and energy homeostasis.
- Hydrophobic core of neutral lipids enclosed by a phospholipid monolayer that also has specific proteins.
- They originate from the ER and are initiated when neutral lipids are produced.
- Neutral lipids result from the esterification of a fatty acid to triacylglycerol or a sterol (such as cholesterol) to sterol ester.
- At low concentrations, neutral lipids are dispersed between the leaflets of the ER bilayer. As their con¬centration increases, neutral lipids accumulate –cluster together (de-mixing).
- If fatty acid storage in lipid droplets is impaired it can result in diseases, such as type 2 diabetes and non-alcoholic fatty liver disease.
Type of membrane proteins
- Integral (intrinsic) membrane protein
- Lipid-linked membrane protein
- Peripheral (extrinsic) membrane protein
Integral (intrinsic) membrane protein- what are they?
- Span the membrane with single or multiple transmembrane (TM) segments
- Interact with fatty acid chains in hydrophobic interior of bilayer
- TM regions made up predominantly of amino acids with hydrophobic side chains
- Can only be extracted from the membrane by disrupting the membrane with organic solvents or detergents due to interactions
Examples of integral membrane proteins-Glycophorin A
Single TM domain
- Asymmetrically orientated amino terminus at top, carboxyl terminus at bottom- has to be this way up
- Extracellular domain glycosylated (sugar groups added)
Examples of integral membrane proteins- Bacteriorhodopsin
Multiple TMs
- 20-30 amino acids in an a-helix required to cross the 45A thick membrane
- Multiple TM domains packed in bundle
- Short loops on either side of membrane
Lipid-linked membrane proteins
Several proteins are stably attached to the membrane through direct covalent interaction with lipids, called acylated or lipid modified proteins. These include proteins with a glycosyl-phoshatidylinositol (GPI) anchor attaching to a protein, such as a prion protein, various viral and cellular proteins that contain myristic acid (myristoylated).
Lipid-linked proteins
- Proteins are covalently linked to a lipid
- This lipid is inserted in the membrane
- Different proteins use different lipids for attachment
Lipid-linked protein examples
Prion proteins, viral proteins, signalling proteins and insulin receptor.
Peripheral (extrinsic) membrane protein
Peripheral membrane proteins don’t interact with the hydrophobic core of the bilayer. They interact with the lipid headgroups or with other membrane proteins through ionic interactions. These ionic interactions can be disrupted with a high salt (Na+Cl-) solution, which will wash the peripheral membrane proteins off the bilayer in a soluble form.
Peripheral (extrinsic) membrane protein- examples- cytoskeletal proteins
Spectrins- form long filaments
Ankyrin- bridges spectrin and band 3 protein
Actin- joins spectrin filaments
Band 4.1- stabilises spectrin-actin interaction
Peripheral Membrane Proteins – RBC Cytoskeleton
If RBC peripheral proteins are removed:
- RBCs ‘ghost’-lose rigid shape
- Membrane proteins become laterally mobile
- Cytoskeleton is important in maintaining shape and rigidity of cell and in restricting the lateral motion (moving sideways) of integral membrane proteins.
Hereditary diseases affecting the cytoskeleton
Hereditary spherocytosis and elliptocytosis:
• Mutations in genes encoding spectrin or ankyrin
• Result in abnormally shaped erythrocytes
• Degraded more rapidly by spleen
• Results in anaemia
Alzheimer’s and membrane proteins
Dementia- serious deterioration in mental functions, such as memory, language, orientation and judgement
Alzheimer’s- most common cause of dementia
Symptoms caused by nerve cells in brain dying and connections between nerves cells degenerating.
The loss of the part of the brain dealing with memory (hippocampus) usually caused the first symptoms.
Progressive disease, getting worse over time.
Clinical features of Alzheimer’s disease
Amnesia- recent memories initially affected
Aphasia- language problems
Agnosia- difficulty recognising and naming objects e.g. auto prosopagnosia (failure to recognise own face)
Apraxia- difficulties in complex tasks
Visuospatial difficulties
Functional impairment- can’t do finances/can’t dress/ do personal things
Mood disorders
Psychosis- delusions and hallucinations
Personality change- ‘living bereavement’
Alzheimer’s disease- neurone malfunction
Neurons malfunction and eventually die. As they malfunction both the chemical signalling between the nerve cells and the electrical signalling within them goes wrong.
Alzheimer’s disease- neurone malfunction
The disease is characterised by loss of short term memory and progressive dementia. Post-mortem, the brain of an Alzheimer’s individual has senile plaques which consist mainly of short amyloid-beta (Abeta) peptide. The peptide is derived from the larger membrane bound amyloid precursor protein (APP).
Alzheimer’s disease (AD)- impact on cholesterol
- Increased incidence of amyloid plaques in those dying of heart disease
- Apolipoprotein E4 involved in cholesterol transport more prevalent in AD
- AD prevalence 70% lower in people taking satins (cholesterol-lowering drugs)
- Statins lower Aβ production in cells
- Statins alter cholesterol content and hence fluidity of membrane rafts
- Statins don’t slow down progression in AD patients
Cholesterol rich domains
Location of lipids into lipid domains
• Plasma membrane is not homogenous
• Consists of different domains
Lipid rafts/domains rich in cholesterol, glycosphingolipids and sphingomyelin
• Certain proteins cluster in rafts
• Important in many biological processes like AD
AD- APP processing in rafts
The proteolytic processing of APP in the cholesterol-rich lipid rafts produces the toxic amyloid-beta peptide, whereas cleavage of APP in other regions of the membrane prevent the formation of amyloid-beta.
The importance of carbohydrates- where are they found in the membrane?
- Attached to lipids-glycolipids
- Attached to proteins-glycoproteins
- Both located on extracellular face of membrane
- Carbohydrates (sugars) can be attached either to membrane lipids or proteins.
- Sugars located in extracellular face of membrane
The importance of carbohydrates – Glycoproteins
O-linked glycoproteins contain a carbohydrate attached to a Serine or Threonine amino acid.
N-linked glycoproteins contain a carbohydrate attached to an asparagine amino acid Asn-X-Ser/Thr (as long as X is not Pro). Large branched structures with as many as 30-40 sugar residues.
The importance of carbohydrates – Function
- Carbohydrates on the lipids and proteins are involved in stabilising
- Intercellular recognition e.g. blood group antigens (ABO)- on lipids
- No extra sugar in O antigen
- N-acetyl-galactosamine in A antigen
- Galactose in B antigen
Treatment for cholera
Symptoms- severe diarrhoea, vomiting
Cause- Vibrio cholerae bacteria in contaminated water and food. Virulence factor is the cholera toxin.
Treatment- Oral rehydration therapy (water, salts, glucose)
Permeability of phospholipid bilayers
Pure lipid bilayer permeable to gases, hydrophobic molecules and small polar molecules.
Pure lipid bilayer impermeable to large polar molecules, such as glucose and other sugars, ions, even small ones such as K+, and charged polar molecules, such as amino acids and phosphorylated sugars.
Types of membrane transport (small molecules)
- Passive transport (no input of metabolic energy is required to move the molecule across the membrane):
• Simple diffusion (e.g. gases, hydrophobic molecules)
• Facilitated diffusion (e.g. ionophores, ion channels, glucose uptake, aquaporins) - Active transport (where energy is required):
• ATP-driven (e.g. K+/Na+ ATPase)
• Ion-driven (e.g. Na+/glucose transporter, Na+/Ca2+ exchanger)
Simple diffusion
Simple diffusion
• No metabolic energy required
• Small molecules (e.g. O2, CO2, NO, urea)
• No specificity
• Rate of diffusion proportional to concentration gradient
• Net movement down conc. gradient
Facilitated diffusion (FD)
- Occurs down concentration gradient- high to low conc.
- No energy required
- Depends on integral membrane proteins (carriers, permeases, channels, transporters)
- Proteins are specific
- Similar kinetics to enzymes - dependent on temp, pH, saturable, inhibitable etc.
Examples of facilitated diffusion- ionophores
Two main types -
(1) Carrier ionophores transport ions across membrane. These are hydrophobic molecules that carry the ion in their core and shield it from the hydrophobic membrane environment.
(2) Channel-forming ionophores. Membrane-spanning hydrophobic proteins (outside) that form a hydrophilic channel (in the middle) that allows ions (sodium and potassium) to pass freely through the cell membrane.
Examples of facilitated diffusion- ion channels
- Allow rapid and gated (channels closed normally and open by a specific stimulus) passage of anions (-) and cations (+)
- Highly selective
- Allow ions to flow across membrane down conc. gradient
- Essential for: maintaining osmotic balance, signal transduction and nerve impulses.
Examples of facilitated diffusion- glucose transport
Transport of glucose into erythrocytes
• Integral membrane protein - glucose transporter (GLUT1) facilitates movement of glucose across plasma membrane. The direction of movement is dependent on relative concentrations of the glucose either side of the membrane.
• 12 transmembrane alpha helices
Glucose uptake by erythrocytes
Glucose transporter move glucose either way across membrane- direction dependent on relative concentrations of glucose on either side of membrane – glucose is always taken up into the erythrocyte and as soon as enters cytosol acted on by hexokinase and converted into glucose-6-phosphate (by adding a phosphate group) which is no longer a substrate for the glucose transporter. This maintains glucose conc. gradient where glucose always wants to move into the cell. The glucose transporter is very specific for the D-isomer of glucose relative to the L-isomer or to other related sugars.
What glucose transporter is the most specific?
L-glucose
Examples of facilitated diffusion- aquaporins
- Water channel proteins required for the bulk flow of H2O across cell membranes
- Protein, 6 trans-membrane a-helices
- Tetramer with 4 pores through which H2O can pass
- Certain circumstances more water needs to be moved across the membrane than can be accommodated by simple diffusion (e.g. in erythrocytes and kidney). In these cases the aquaporin water channel protein is involved
- Needed when want to move large amount of water rapidly in in erythrocytes, kidney cells
Active transport
- ATP-driven - Na+, K+, Ca2+ and H+ transport is directly coupled to ATP hydrolysis e.g. Na+/K+ ATPase
- Ion-driven -Coupled to movement of ion (Na+ or H+) down its concentration gradient e.g. Na+/glucose transporter, Na+/Ca+ exchanger
- AT requires energy can come from the direct hydrolysis of ATP (“ATP-driven”) or from the movement of an ion down its concentration gradient (“ion-driven”)
ATP- driven AT
High [K+}, low [Na+] in cell (high concentration of Na+ outside and a low concentration inside cell)= Na+/K+ gradient:
• controls cell volume
• makes nerve and muscle cells electrically excitable
• facilitates ion-driven active transport of amino acids and sugars
Maintained by Na+/K+ ATPase
Na+/K+ ATPase:
• Tetramer: a2b2
• Pumps 3 Na+ ions out and 2 K+ into the cell
• This polarises the cell membrane (+ on outside)
• ATP hydrolysis induces conformational changes, pumping Na+ and K+ against their concentration gradients- thus need input of energy
• Coupled system: ATP is not hydrolysed unless Na+ and K+ are transported and the ions are not moved unless ATP is hydrolysed
Ion-driven AT
Movement of molecule is coupled to ion movement (Na+ or H+).
Symport (both molecules travel in same direction)- Movement of Na+ ions into the cell down the concentration gradient can be coupled to movement of glucose into the cell via the Na+/glucose transporter.
Antiport (molecules moving in opposite directions)- Na+ movement into the cell can also be coupled to movement of molecules out of the cell (antiport) - for example the Na+/Ca2+ exchanger which helps to maintain a low concentration of Ca2+ inside the cell.
Cardiac Glycosides (cardiotonic steroids)
- Plant steroids, e.g. digitalin (digitalis), ouabain, digoxin, digitoxin
- Inhibit Na+/K+ ATPase
- Increase conc. Na+ inside cell
- Decreases Na+ gradient across membrane
- Decreases Ca2+-Na+ exchange across membrane
- As this Na+ gradient is required for the Na+/Ca2+ exchanger to move Ca2+ out of the cell
- Increases conc. Ca2+ inside cell
- Enhances strength of contraction of heart muscle
Intestinal Epithelial Cells
- Line the lumen of small intestine
- Large surface area for absorption
- The apical membrane has finger-like (brush-like) projections of the membrane that increase the surface area for absorption of nutrients from digested food (sugars, amino acids, lipids, etc.)
- Transfer nutrients into the blood
- Similar epithelial cells are found lining the kidney tubules where they are involved in the reabsorption of molecules from the urine.
Intestinal Epithelial Cells- movement of glucose
- Movement of glucose from gut into the epithelial cell driven by movement of Na+ ions down concentration gradient through the Na+/glucose symport transporter in the apical membrane
- Glucose diffuses across basolateral membrane through glucose transporter into blood stream, an example of facilitated diffusion
- Concentration of Na+ ions maintained at low level by Na+/K+ ATPase in the basolateral membrane
- As glucose moves through the epithelial cell, water follows by osmosis
Oral rehydration therapy
- Uptake of glucose dependent on Na+, therefore give oral solution of glucose and Na+
- This increases the osmotic pressure in epithelial cells, therefore H2O follows