Membrane composition Flashcards

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1
Q

flippases

A

Move phospholipids from outer to inner leaflet of bilayer
Requires ATP
Highly specific

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2
Q

floppases

A

Move phospholipids from inner to outer leaflet of bilayer
Requires ATP
Specific

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3
Q

scramblases

A

Move phospholipids in both directions
No ATP needed
Non-specific

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4
Q

factors affecting membrane fluidity

A

Temperature
Acyl chain length
Acyl chain saturation

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5
Q

Effect of temperature on membrane fluidity

A

cold=rigid/less fluid
so at cold temperatures, an organism would have more unsaturated fatty acids

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6
Q

effect of acyl chain length on membrane fluidity

A

shorter chains increase fluidity as they have fewer van der waals forces so are less tightly packed

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7
Q

effect of acyl chain saturation on membrane fluidity

A

Unsaturated fatty acids form kinks so cant pack closely together so increase fluidity

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8
Q

is the membrane symmetrical or asymmetrical

A

asymmetrical

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9
Q

why do hydrophobic molecules clump together

A

reduce SA:V in contact with water

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10
Q

lipid movement within membranes

A

Lateral diffusion
Flip-flop (not spontaneous)
Rotation
Flexion

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11
Q

how is membrane fluidity measured

A

FRAAP (fluorescence recovery after photobleaching)
protein of interest is labelled with a fluorescent marker, and the fluorescence in a small patch of membrane is then irreversibly “bleached” by a pulse of light from a focused laser. The time it takes for fluorescence to return to the bleached membrane patch provides a measure of how rapidly unbleached, fluorescently labelled proteins diffuse through the bilayer into the area. This “recovery” is plotted on a curve that shows fluorescence over time.

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12
Q

noncytosolic monolayer

A

phosphatidylcholine
sphingomyelin
Glycolipids
cholesterol (= to cytolsolic)

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13
Q

cytosolic monolayer

A

phosphatidylserine
phosphatidylethanolamine
phosphatidylinositols
cholesterol (= to non cytosolic)

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14
Q

types of membrane protein

A

Integral
Peripheral
Lipid-anchored

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15
Q

Peripheral membrane proteins

A

Bind to surface by electrostatic interactions with the heads of lipids or other proteins

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16
Q

Lipid-linked membrane protein

A

lipid covalently attached to protein

17
Q

nonpolar aliphatic R groups

A

glycine
alanine
valine
leucine
methionine
isoleucine

18
Q

aromatic R groups

A

phenylalanine
tyrosine
tryptophan

19
Q

polar, uncharged R groups

A

serine
threonine
cysteine
proline
asparagine
glutamine

20
Q

charged R groups

A

lysine
arginine
histidine
aspartate
glutamate

21
Q

The polar nature of peptide bonds are not energetically favourable in the hydrophobic core of the lipid bilayer. How is this problem overcome

A

Hydrogen bonding between the partial negative charge in the carbonyl oxygen and the partial positive charge of the amide hydrogen in a regular pattern
Neutralises charges
Length of chain compressed due to the hydrogen bonding- alpha helix formation
This involves the backbone-not side groups

22
Q

beta barrel integral membrane protein

A

all carbonyl oxygens and amide hydrogens are also bonded in a regular pattern, but the hydrogen bonding patterns are further away. Tend to be found in mitochondrial outer membrane and bacterial outer membranes.

23
Q

helical bundle membrane proteins

A

the integral proteins that form alpha helices in the membrane

24
Q

antiparallel beta sheet

A

is formed with adjacent -strands running in opposite directions. Every other side chain extends above or below the sheet
Hydrogen bonding between strands

25
Q

dimensions of lipid bilayer

A

50 angstroms
30 of which are the hydrophobic region

26
Q

extended conformation, 1 residue=

A

3.5 angstrom

27
Q

alpha helical conformation, 1 residue=

A

1.5 angstrom
20 residues to span hydrophobic core

28
Q

hydrophobicity scale

A

negative=hydrophobic amino acid
Average hydrophobicity of a stretch of amino acids is calculated, plotted on graph
When window is over a hydrophobic stretch of amino acids there is a trough
troughs indicate transmembrane regions
Hydrophobicity analysis does not predict beta-barrel membrane proteins.

29
Q

how to remove integral membrane proteins from the lipid bilayer

A

detergents

30
Q

how to remove peripheral membrane proteins that are attached to protein

A

high salt concentrations

31
Q

protein channels structure-multipass transmembrane proteins

A

series of alpha helices that cross bilayer multiple times
hydrophilic side chains form an aqueous pore