MedGen Terms (T&T) Flashcards
The boundary between the 3’ end of an intron and the 5’ end of the following exon
Acceptor (or 3’) splice site
A type of chromosome with the centromere near one end
Acrocentric
Chromosomes 13, 14, 15, 21, 22
Acrocentric chromosomes
One of the alternative versions of a gene or DNA sequence at a given locus
Allele
An oligonucleotide probe synthesized to match a particular DNA sequence precisely and allow the discrimination of alleles that differ by only a single base
Allele-specific oligonucleotide (ASO)
The same or similar phenotypes are caused by different mutant alleles
Allelic heterogeneity
The ability of a test to perform correctly, measure what it is designed to measure
Analytic validity
Any chromosome number that is not an exact multiple of the haploid number
Aneuploidy
Birth defects resulting from malformations, deformations, or disruptions
Anomalies
The progressively earlier onset and increased severity of certain diseases in successive generations of a family
Anticipation
A three-base unit of RNA complementary to a codon in mRNA
Anticodon
Programmed cell death
Apoptosis
A group of abnormalities of unknown etiology and pathogenesis that is seen together more often than would be expected by chance
Association
Any nuclear chromosome other than the sex chromosomes
Autosome
A polymorphism maintained in the population by heterozygote advantage, allowing an allele, even if deleterious in the homozygous state, to persist at a relatively high frequency in the population
Balanced polymorphism
A technique which stains chromosomes in a characteristic pattern, allowing identification of individual chromosomes and structural abnormalities
Banding
The sex chromatin as seen in female somatic cells, representing an inactive X chromosome
Barr body
A pair of complementary nucleotide bases, used as the unit of measurement of the length of a DNA sequence
Base pair (bp)
A mathematical model used to calculate recurrence risk
Bayesian analysis
The ethical principle of behaving in a way that promotes the well-being of others
Beneficence
An abnormality present at birth, not necessarily genetic
Birth defect
Tumor-suppressor genes that are indirectly involved in controlling cellular proliferation by repairing DNA damage and maintaining genomic integrity, protecting from mutations that could lead to cancer
Caretaker genes
An individual heterozygous for a particular mutant allele; disease is not expressed
Carrier
The primary constriction on the chromosome, required for normal segregation in mitosis and meiosis
Centromere
The crossing of chromatid strands of homologous chromosomes, seen at the diplotene of the first meiotic dividion
Chiasma
An individual composed of cells derived from two genetically different zygotes; an inevitable result of transplantation
Chimera
The two parallel strands of chromatin, connected at the centromere, that constitute a chromosome after DNA synthesis
Chromatids
The complex of DNA and proteins of which chromosomes are composed
Chromatin
A small mass of chromatin containing genes for ribosomal RNA, at the end of the short arm of each chromatid of an acrocentric chromosome
Chromosomal satellite
One of the threadlike structures in the cell nucleus; consists of chromatin and carries genetic information
Chromosome
A clinical condition caused by an abnormal chromosome constitution in which there is duplication, loss, or rearrangement of chromosomal material
Chromosome disorder
A change in the genetic material at the chromosome level
Chromosome mutation
Refers to the relationship between two sequences that are on the same chromosome
Cis
The occurrence of clinically different phenotypes from mutations in the same gene
Clinical heterogeneity
The ability of a test to improve the medical care than an individual receives
Clinical utility
The ability of a test to detect the disease that the test was designed to detect
Clinical validity
Both alleles of a pair are expressed in the heterozygous state
Codominant
A triplet of three bases in a DNA or RNA molecule, specifying a single amino acid
Codon
The probability that an individual homozygous at a locus received both alleles from one ancestor
Coefficient of inbreeding (F)
A fluorescence hybridization technique used to compare two different DNA samples with respect to their relative content of a particular DNA segment or segments
Comparative genome hybridization (CGH)
A pattern of inheritance that is not mendelian, usually results from alleles at more than one locus interacting with environmental factors
Complex inheritance/Multifactorial inheritance
An individual, or genotype, with two different mutant alleles at the same locus
Compound heterozygote
Mosaicism present in the placenta but not present in the fetus
Confined placental mosaicism
Present at birth, not necessarily genetic
Congenital
Related by descent from a common ancestor
Consanguinity
A syndrome resulting from a microdeletion of chromosomal DNA extending over two or more loci
Contiguous gene syndrome
A variation in DNA sequence defined by the presence or absence of a segment of DNA, ranging from 200bp to 2Mb
Copy number variant (CNV)
If a DNA variant has an allele frequency >1%
Copy number polymorphism (CNP)
A procedure used in prenatal diagnosis to obtain a sample of fetal blood directly from the placenta
Cordocentesis
A procedure used in prenatal diagnosis to obtain amniotic fluid
Amniocentesis
A procedure used for prenatal diagnosis, where fetal tissue for analysis is withdrawn during 10-13wks gestation
Chorionic villus sampling (CVS)
A measure of correlation that varies from 1 for perfect positive to -1 for perfect negative
Correlation coefficient (r); 0 indicating there is no correlation
The reciprocal exchange of segments between chromatids of homologous chromosomes
Crossover
The study of chromosomes
Cytogenetics
The fetal cells of the chorionic villi that are sampled for karyotyping and DNA analysis
Cytotrophoblast
The two individual chromosomes formed when a single chromosome composed of paired chromatids separates at the centromere in anaphase of cell division
Daughter chromosomes
A recognizable pattern of dysmorphic features caused by extrinsic factors that affect the fetus in utero
Deformation syndrome
the distance between two individuals in a pedigree
Degree of relationship
The loss of sequence of DNA from a chromosome
Deletion
A structurally abnormal chromosome with two centromeres
Dicentric
The process whereby a cell acquires a tissue-specific pattern of expression of genes and proteins and a characteristic phenotype
Differentiation
The number of chromosomes in most somatic cells
Diploid
A birth defect caused by destruction of tissue; may be caused by vascular occlusion, a teratogen, or rupture of the amniotic sac with entrapment
Disruption
Twins produced by two separate ova, separately fertilized
Dizygotic twins
The molecule that encodes the genes responsible for the structure and function of living organisms and allows the transmission of genetic information
DNA
An enzyme that can synthesize a new DNA strand by using a previously synthesized DNA strand as a template
DNA polymerase
A trait phenotypically expressed in heterozygotes
Dominant
A disease-causing allele, or the effect of such an allele, that disrupts the function of a wild-type allele in the same cell
Dominant negative
As a consequence of X inactivation, the amount of product formed by the two copies of an X-linked gene in females is equivalent to the amount formed by the single gene in males
Dosage compensation
An individual who is heterozygous at each of two different loci
Double heterozygote (different from compound heterozygote!)
Expression of a gene at a time when it is not normally expressed
Dyschronic expression
Morphological developmental abnormalities, as seen in many syndromes of genetic or environmental origin
Dysmorphism
A disorder resulting from the interaction of a genetic predisposition to a specific disease with an environmental factor
Ecogenetic disorder
Expression of a gene in places where it is not normally expressed
Ectopic expression
A cell derived from the inner cell mass that is self-renewing in culture and can repopulate all the tissues of the embryo
Embryonic stem cell
The probability that a familial trait will occur in a family member based on observed numbers of affected and unaffected individuals
Empirical risk
A metabolic disorder resulting from deficiency or abnormality of a specific enzyme
Enzymopathy
Any factor that can affect gene function without change in the genotype
Epigenetic
Any chromosome number that is an exact multiple of the number of haploid gamete (n)
Euploid
A transcribed region of a gene that is present in mature messenger RNA
Exon
The extent to which a genetic defect is expressed
Expressivity
Any trait that is more common in relatives of an affected individual than in the general population, whether the cause is genetic, environmental, or both
Familial
Stage of intrauterine development from weeks 9 to 40
Fetal phase
FISH
flourescence in situ hybridization
The probability of transmitting one’s genes to the next generation compared with the average probability for the population
Fitness (f)
A high frequency of a mutant allele in a population founded by a small ancestral group when one or more of the founders was a carrier of the mutant allele
Founder effect
Nonstaining gap in the chromatin of a metaphase chromosome (ex:Xq27)
Fragile site; Xq27 is the fragile site for Fragile X syndrome
A mutation involving a deletion or insertion that is not an exact multiple of three base pairs, and thus changes the reading frame of the gene downstream of the mutation
Frameshift mutation
A mutation associated with an increase in one or more of the normal functions of a protein
Gain of function mutation
A reproductive cell with the haploid chromosome number
Gamete (ovum or sperm)
Tumor suppressor genes that directly regulate cell proliferation
Gatekeeper genes
A hereditary unit; a sequence of chromosomal DNA required for the production of a functional product
Gene
The number of copies of a particular gene in the genome
Gene dosage
A set of genes containing related exons, indicating that the genes have evolved from an ancestral gene by duplication and subsequent divergence
Gene family
Gradual diffusion of genes from one population to another across a barrier (may be physical or cultural, and may be breached by migration or mixing)
Gene flow
The characteristic arrangement of the genes on the chromosomes
Gene map
All the alleles present at a given locus or at all loci in the population
Gene pool
Treatment of a disease by introduction of DNA sequences that will have a therapeutic benefit
Gene therapy
Characteristic determined by genes
Genetic
The 64 triplets of bases that specify the 20 amino acids found in proteins
Genetic code
The ability of one mutant allele at a locus to correct for the loss of function associated with another allele at the same or another locus, demonstrating that the mutations are not identical
Genetic complementation
The provision of information and assistance to affected individuals or family members at risk of a disorder that may be genetic, concerning the consequences of the disorder, the probability of developing or transmitting it, and the ways in which it may be prevented
Genetic counseling (according to T&T)
A defect wholly or partly caused by a gene abnormality
Genetic disorder
Random fluctuation of allele frequencies in small populations
Genetic drift
The production of the same or similar phenotypes by different genetic mechanisms
Genetic heterogeneity
A mutant allele or genetically determined trait that leads to failure to reproduce, though not necessarily to death prior to reproduction
Genetic lethal
The sum total of death and disease caused by mutant genes
Genetic load
Testing on a population basis to identify individuals at risk of developing or of transmitting a specific disorder
Genetic screening
A genotype that determines a phenotype closely similar to that determined by a different genotype
Genocopy
The complete DNA sequence, containing the entire genetic information, or a gamete, an individual, a population, or a species
Genome
The chromosomal DNA sequence of a gene or segment of a gene, including the DNA sequence of noncoding and coding regions
Genomic DNA
The field of genetics concerned with structural and functional studies of the genome
Genomics
The alleles present at one locus, the genetic constitution of an individual as distinguished from the phenotype
Genotype
The cell line from which gametes are derived
Germline
The presence of two or more genetically different types of germline cells, resulting from mutation during the proliferation and differentiation of the germline
Germline mosaicism