MCQ Flashcards
Is insulin important during the fed state?
Yes
Why is insulin important during the fed state?
Insulin stimulates glycogenesis
How is the acetylcholine receptor opened?
Rotation of the pore helices
What is a potent activator of PFK-1 in liver cells?
F-2,6-bisP
Does complete oxidation of one molecule of palmitate provide more or less molecules of ATP than complete oxidation of one molecule of glucose?
Palmitate produces more
Are ketone bodies beneficial for the brain?
Yes
What oxidises very long chain fatty acids?
Peroxisomes
What difference can be observed in the circulating fatty acid levels of individuals with type 2 diabetes?
Elevated levels
What do proteins destined for the plasma membrane pass through?
Endoplasmic reticulum and Golgi apparatus
What does manose-6-phosphate do to soluble proteins?
Directs them to lysosomes
What would genomic amplification of the c-MYC gene likely lead to?
Development of cancer
Are inherited single allele mutations in tumour suppressor genes linked to susceptibility to cancer?
Yes
What happens to the melting temperature of DNA as length increases?
It increases
What do histone undergo in their N-terminal sequences?
Post-translational modifications
What does the binding of the glucocorticoid receptor to its ligand result in?
Translocation of the glucocorticoid receptor to the nucleus
What is transcription termination coupled to in eukaryotes?
mRNA polyadenylation
Why does the core RNA polymerase terminate transcription at rho-independent sites in prokaryotes?
Due to a GC-rich hairpin and a run of U nucleotides in the RNA
What is the significance of the Pribnow box at -10 in prokaryotes?
Important determinant of the start site of transcription
What is TFIID?
A complex of TATA binding protein (TBP) and a number of other
general transcription factors called TAFs
What impact will increasing concentration of BH3 only proteins have on a cell?
Make the cell more likely to undergo apoptosis
What does the spindle assemble checkpoint do?
Monitors the proper attachment of chromosomes to microtubules during mitosis
What is the action of Humira in rheumatoid arthritis?
Blocks the action of TNFα on its receptor
How are human antibodies created from transgenic mice?
Mice are derived from embryonic stem cells engineered to include the human antibody loci in their genome
Does a plasmid produce a circular recombinant molecule in the host cell?
Yes
Does a bacterial artificial chromosome produce a circular recombinant molecule in the host cell?
Yes
Does a yeast artificial chromosome produce a circular recombinant molecule in the host cell?
No
Does a cosmid produce a circular recombinant molecule in the host cell?
Yes
Does a P1-derived artificial chromosome produce a circular recombinant molecule in the host cell?
Yes
Are coding or non-coding regions of genes more conserved between different animal species?
Coding regions are more conserved
How many introns do mammalian mitochondrial genes have?
Few or none
Are mammalian genes distributed evenly across the genome?
No
Is the one gene-one protein assumption true or false?
False
What do mutations in genes that are imprinted often alter?
Foetal growth
How is mild anaemia of sickle cell trait characterised at the molecular level?
A deleterious gain of function
What is the high rate of de novo mutations in Duchenne muscular dystrophy likely related to?
The large size of the dystrophin gene
Are most copies of rare mutant alleles found more often in homozygotes or heterozygotes?
Heterozygotes
What allows us to predict that male tortoiseshell cats will be sterile?
X-inactivation
What hormone is produced by alpha cells in the isle of langehans?
Glucagon
What is adrenaline?
A catecholamine derived from tyrosine (the amino acid)
What does insulin stimulate muscle to convert glucose into?
Glycogen
What do serine proteases use to stabilise the tetrahedral intermediate?
Oxyanion hole
What is the amino acid residue at the active site of HIV protease that mediates target cleavage?
Aspartic acid
What is targeted by sarin to inhibit acetylcholinesterase?
Serine
What intracellular messenger releases Ca2+ from the endoplasmic reticulum?
Inositol-1,4,5-trisphosphate (IP3)
What signal stimulates synthesis of phosphatidylinositol-3,4,5-trisphosphate (PIP3)?
Insulin
What is released from a G protein when it is activated by a receptor?
GDP
What sequence ensure nascent soluble proteins are retained in the endoplasmic reticulum?
KDEL
What mediates vesicular transport between endoplasmic reticulum and the Golgi apparatus?
COP II vesicle
What mediates the first step in cholesterol uptake?
LDL receptor
What chemical interaction holds strands together in a DNA double helix?
Hydrogen bonds
What chemical moiety is at the 3’- end of a linear DNA molecule?
Hydroxyl
What aromatic base is normally paired with guanine?
Cytosine
Is cytosine acidic or basic?
Basic
Is cytosine aromatic?
Yes
What is a telomere?
The DNA region at each end of a chromosome
What enzyme initiates nucleic acid synthesis in DNA replication?
Primase
What is a transposon?
A mobile genetic element
What is a distinguishing feature of a lariat?
2’-5’ phosphodiester bond
What part of the antibody is involved in interaction with receptors on effector cells of the immune system?
Fc
What is CDR?
A hypervariable loop joining two beta strands
What defines the binding specificity of an antibody?
CDR (a hypervariable loop joining two beta strands)
What technique involves separation of the products of transcription based upon their lengths, followed by transfer on to a membrane support to allow interrogation with a labelled DNA or cDNA probe?
Northern blotting
What is cDNA library construction?
A preparation of a bank of clones from a tissue or a developmental stage that allows further investigation of the genes expressed through sequence analysis or hybridisation to locus specific probes
What is restriction fragment length polymorphism analysis?
Digestion of nucleic acids and comparison of the product sizes following gel separation to identify allele specific patterns
What is a de novo loss of several adjacent loci from one chromosome, which results in a disease phenotype, an example of?
Contiguous gene deletion syndrome
What phenomenon is important for normal development which is often impaired in clinical conditions such as Prader-Willi syndrome?
Imprinting
Does muscle require insulin for efficient uptakes and metabolism of glucose?
Yes
Does fat require insulin for efficient uptakes and metabolism of glucose?
Yes
Does the brain require insulin for efficient uptakes and metabolism of glucose?
No
Does the pancreas require insulin for efficient uptakes and metabolism of glucose?
No
Does the liver require insulin for efficient uptakes and metabolism of glucose?
No
How are serine and alanine similar?
Serine is alanine with another hydroxyl group
How are tyrosine and phenylalanine similar?
Tyrosine is phenylalanine with another hydroxyl group
What do the amino acid pairs serine+alanine and tyrosine+phenylalanine have in common?
Alanine + -OH = Serine
Phenylalanine + -OH = Tyrosine
Is glucose a reducing sugar?
Yes
What molecules link to form maltose?
2 α-D-glucose molecules
Does starch or glycogen contain more α-1,6 branches?
Glycogen
What is cellulose formed from?
A chain of β-D-glucose molecules
Are sugars added to proteins in the endoplasmic reticulum?
Yes
Where do the side chains point in a β-sheet?
Above and below the plane of the sheet
In regular secondary structures, what are all the backbone C=O and N-H atoms forming?
Hydrogen bonds
How many of the backbone C=O and N-H atoms form hydrogen bonds in regular secondary structures?
All of them
What is an α-helical hairpin mainly held together by?
Hydrophobic interactions
In an α-helix, do the side chains point towards the C-terminus?
No
What does the Φ angle describe?
Rotation around the bond between the Cα and N atoms
What angle describes the rotation around the bond between Cα and N atoms?
Φ
What is involved in the humanisation of a murine antibody?
The CDR loops of the murine antibody are grafted onto a human framework
Does 1,3-bisphosphoglycerate formation from glyceraldehyde-3-phosphate require ATP?
No
Is glucokinase inhibited by glucose-6-phosphate?
No
Is the reaction catalysed by aldolase during glycolysis essentially irreversible?
No
Does glycerol phosphate formation from dihydroxyacetone phosphate requires NAD+?
No
Does AMP interact with glycogen phosphorylase?
Yes, AMP activates glycogen phosphorylase
Can more glycogen be stored in liver or muscle?
Muscle
How does glucose influence phosphorylation of liver glycogen phosphorylase?
Promotes it
What promotes phosphorylation of liver glycogen phosphorylase?
Glucose
What reaction does glucose promote in liver glycogen phosphorylase?
Phosphorylation of liver glycogen phosphorylase
In liver cells, is the NAD+/NADH ratio lower in the mitochondria or the cytosol?
Mitochondria
What reduces pyruvate kinase activity in the liver?
The action of glucagon
Do liver tissues use ketone bodies?
No
What is the effect of ethanol metabolism in the liver?
It slows down gluconeogenesis
How many protons does complex IV pump for each pair of electrons transferred to oxygen?
2 protons
Which complexes in the electron transport chain contain tightly-bound iron-sulphur proteins that transfer single electrons?
Complexes I, II, III
If the associated entropy change is positive, what will happen as long as the temperature exceeds a certain threshold?
An endothermic chemical reaction will spontaneously proceed
What condition must be met for an endothermic chemical reaction to spontaneously proceed if the associated entropy change is positive?
Temperature exceeds threshold value
What conditions must be met in order for an endothermic chemical reaction to spontaneously proceed?
The associated entropy change is positive
Temperatures exceeds threshold value
What do G-protein-coupled receptors promote?
GDP release from G proteins
Do G-protein-couple receptors bind ATP?
No
Does the activation of G-protein-coupled receptors require phosphorylation of tyrosine residues?
No
Do G-protein-coupled receptors allow ions to pass freely across the plasma membrane?
No
Which has a larger phosphorylation potential, adenosine triphosphate or phosphocreatine?
Phosphocreatine
How are newly synthesised insulin receptors targeted to the plasma membrane?
Via the Golgi apparatus
What cell type do adenocarcinomas originate in?
Glandular epithelial cells
Is there a correlation between genome size and organism complexity?
No
What do the majority of repeat sequences in our genome derive from?
Transposable elements
What do bacteria rely on in DNA mismatch repair?
DNA methylation
What do bacteria rely on DNA methylation for?
DNA mismatch repair
Is DNA methylation inherited in a Mendelian fashion?
No
How is ubiquitin linked to lysine in proteins?
Covalently via a multi-step process
Are most genes in mammals spliced or not?
Spliced
Is RNA splicing common in yeast?
No, it’s rare
What does canonical splicing require?
Large ribonucleoprotein
During RNA splicing, what does the branch point region base pair with?
US snRNA
During RNA splicing, what does US snRNA pair with?
The branch point region base
What does alternative splicing increase?
The diversity of the proteome
What increases the diversity of the proteome?
Alternative splicing
In prokaryotes, does splicing require a unique lariat structure to form?
No
What do cells with unrepaired DNA usually undergo?
Apoptosis
What does phosphorylation of Cdc6 help prevent?
Re-replication of DNA
Can cells with unrepaired DNA damage become senescent?
Yes
What effect does cleaving have on a caspase?
Activated when cleaved
What caspase cleaves Bid?
Caspase 8
Is caspase 7 an initiator caspase?
No
Is caspase 8 part of the extrinsic pathway of apoptosis?
Yes
What residues to caspases primarily cleave substrates at?
DEVD residues
What does giemsa-banding reflect?
Chromatin condensation
How often will an aneuploid karyotype be abnormal?
Always
How many chromosomes does the mouse karyotype have?
40
How does the position of the centromere vary for a given chromosome?
Stays constant
What regulates mammalian X inactivation?
Non-coding RNA
What proposed random X inactivation?
Mary Lyon’s 1961 paper
Which is the heterogametic sex in birds?
Female
Is the human Y chromosome gene-rich?
No
What is the FMR1 gene influenced by?
Trinucleotide repeat expansion
What have genome-wide association studies usually identified?
Low risk disease variants
What is Down’s syndrome generally caused by?
Meiotic defects
Why is trisomy 21 common in Down’s syndrome?
This chromosome is small and the effects of the increased gene dosage are therefore less serious
Is the risk of Down’s syndrome correlated to maternal age?
Yes, risk increases with maternal age
Is Down’s syndrome usually congenital?
Yes
Do individuals with Down’s syndrome have a lower incidence of dementia?
No, they have a higher incidence of dementia
What is biotin a cofactor for?
Acetyl CoA carboxylase
What is a cofactor of acetyl CoA carboxylase?
Biotin
What is pantothenate involved in?
Transfer of 2-carbon units
What is involved in the transfer of 2-carbon units?
Pantothenate
What is an electron carrier in cytochrome C?
Haem
Is haem found in cytochrome C?
Yes, it acts as an electron carrier
What modular domain binds proline-rich sequences?
SH3
What nucleotide exchange factor induces conformational change in Ras and release of GDP?
Sos
What transcription factor is activated by the MAP kinase pathway?
Fos
What enzyme is inhibited via phosphorylation during starvation, thus promoting gluconeogenesis?
Pyruvate dehydrogenase
What amino acid provides an important connection between the citric acid cycle and the urea cycle?
Aspartic acid
What metabolite inhibits de novo fat synthesis by activating a kinase?
AMP
What is an IP3 receptor?
An ion channel
What inactivates the signalling properties of cyclic AMP?
Phosphodiesterase
What conserved protein domain binds to phosphotyrosine residues?
SH2 domain
What is activated by genomic amplification in neuroblastoma?
N-Myc
What tumour virus protein is responsible for binding to and inactivating p53?
Human papilloma virus E6
What regulates c-Src?
Intramolecular tyrosines with a phosphotyrosine?
What is a centromere?
The region of attachment between two sister chromatids
What function effect is achieved by X-chromosome inactivation?
Dosage compensation
What is a T-loop?
A DNA structure formed by telomeres
What enzyme unwinds the parental DNA in replication?
DNA helicase
What is the proof reading activity of DNA polymerases?
3’-5’ exonuclease
What step is required in the maturation of bacterial Okazaki fragments?
Nick translation
What is the template of transcription in eukaryotes?
Genomic DNA
What is histone acetylase?
A chromatin-modifying enzyme
What is an enhancer in transcriptional control?
A cis-regulatory element that can be located far from the gene locus
What is a mosaic?
Individual composed of cells with different genotypes
What is chiasma?
Point where exchange of genetic information occurs between homologous non-sister chromatids
What is the chi-squared test?
Statistical method for determining the significance of observed outcomes against expected results
What do glucagon, adrenaline and vasopressin all stimulate?
Cell signalling cascades using cAMP as a common intracellular signal transduction molecule
What common intracellular signal transduction molecule do glucagon, adrenaline and vasopressin all use when stimulating cell signalling cascades?
cAMP
What regulates protein kinase A catalytic activity?
Binding to cAMP
What repulsion is required for calcium ion flow through voltage-gated calcium channels?
Ion-ion repulsion
What do voltage-gated calcium channels open in response to?
Plasma membrane depolarisation
How many binding sites do voltage-gated calcium channels have for calcium ions?
2
How can the response of voltage-gated calcium channels to membrane potential be modified?
Phosphorylation
Can disaccharides have reducing ends?
Yes
How many chiral centres do glucose and galactose differ at?
1
What chiral centre do glucose and galactose differ at?
Carbon 4
What bond is the α-1,6 branchpoint in glycogen?
Glycosidic bond
How many epitopes does a monoclonal antibody typically recognise on the target antigen?
1
How many domains do IgG class antibodies contain?
12 immunoglobulin domains held together by disulphide bonds
What allows the antigen binding arms of a single antigen to bind to two antigens?
The hinge region
What does the hinge region allow?
The binding arms of a single antigen to bind to two antigens
What mediates effector functions of antibodies?
The constant domains
What do the constant domains mediate?
Effector function of antibodies
What permits the variable domain to form the antigen binding site?
Sequence diversity in three loops
What does sequence diversity in three loops allow the variable domain to do?
Form the antigen binding site
Does secondary structure always maximise side chain hydrogen bonds?
No
What proteins have no disulphide bonds?
Intracellular proteins
Is disulphide bonding necessary for all tertiary structures?
No, intracellular proteins have none
What sort of protein is haemoglobin?
Globular
What makes up the Greek key motif?
4 β-sheets
Do cofactors provide functionality?
Yes, ie carrying electrons and oxygen
What connects the two nucleotides contained by NAD and FAD?
5’-5’ phosphodiester bonds
What is tetrahydrofolate essential for?
Adenine production
What vitamin is the precursor for a cofactor essential for acyl transfer?
Pantothenate
What is the cofactor pantothenate is a precursor for essential for?
Acyl transfer
What is MLH1 essential in?
Eukaryotic mismatch repair system -> proof reading -> error frequency x100 increase
Do inherited single allele mutations in tumour suppressor genes confer susceptibility to cancer?
Yes
What is glucokinase also known as?
Hexokinase IV
What is hexokinase IV?
Glucokinase
Is hexokinase inhibited by its product?
Yes
Is glucokinase inhibited by its product?
No
Is hexokinase IV inhibited by its product?
No
What is the ΔG·’ for the glycolytic reaction catalysed by fructose bisphosphate aldolase?
Highly endergonic
How many carbons does acetyl have?
2
Is DNA or RNA more stable at alkaline pH?
DNA
Can RNA hybridise with DNA?
Yes
What does cytosine demethylation produce?
Uracil
Are histones basic or acidic?
Basic
Can histone tails undergo chemical modifications?
Yes
What do chromatin remodellers use for activity?
ATP
What does heterochromatin largely consist of?
Repetitive DNA
What does histone H! bind to?
Inter-nucleosomal DNA
How does DNA replication proceed from the DNA origin?
Bidirectionally
What is primase?
A DNA-dependent RNA polymerase
How can flux regulation through a pathway be controlled?
Enzyme expression levels
What does allosteric control provide?
Rapid regulation of pathways, usually from intracellular cues
What prevents accumulation of the products of a given pathway?
Feedback inhibition
What inactivates pyruvate dehydrogenase?
Phosphorylation