MCP Flashcards
What are the five most common aldoses?
glyceraldehyde, ribose, glucose, mannose, galactose.
What are the three most common ketoses?
dihydroxyacetone, ribulose, fructose.
What are enantiomers? How do they get their designation?
mirror image molecules. The D sugar has the -OH group on the 5th C on the RIGHT and the L sugar on the LEFT.
Which enantiomer is more common? (D or L)
D is more biologically abundant
What is the name of the 1st carbon in the ring structure?
anomeric carbon
How do a and B anomers differ?
a anomer has the -OH and the -CH2OH group pointed in opposite direction (with the -OH group down) and the B anomer has the groups pointing in the same direction.
What type of bond connects two monosaccharides?
glycosidic bond
What are the naming criteria for a glycosidic bond?
a/B configuration of the anomeric carbon and the numbers of the connecting carbons (e.g. B-1, 4)
What are the two “starch” molecules we ingest?
amylose and amylopectin
What is “milk sugar?”
lactose
What is table sugar?
sucrose
Describe the bonds in amylose.
linear glucose polysaccharide with a-1,4 linkages
Describe the bonds in amylopectin.
branched glucose polysaccharide with both a-1,4 and a-1,6 linkages
Describe the bonds in lactose.
disaccharide with glucose and galactose with a B-1, 4 linkage
Describe the bonds in sucrose.
disaccharide with fructose and glucose with a a-1,2 linkage.
How do amylopectin and glycogen differ?
glycogen is more branched than amylopectin.
What is dietary fiber?
cellulose
Describe the bonds in cellulose.
linear glucose polysaccharide with B-1,4 linkages.
Can we digest cellulose?
No, humans do not have an enzyme that breaks this type of bond
What type of enzyme breaks down carbohydrates?
glycosidases
What is the enzyme that breaks internal glycosidic bonds?
endoglycosidases
What is the enzyme that breaks terminal glycosidic bonds?
exoglycosidases
What is the enzyme that breaks down disaccharides?
disaccharidases
What are the defining characteristics of the specificity of glycosidases? (3)
structure of the bond (e.g. B 1,4), types of sugar in the bond, and position (internal or terminal)
What are the criteria for a-amylase activity?
a-1,4 linkages, glucose, internal bonds
What are the types of a-amylase?
pancreatic and salivary
Are the products of a-amylase activity monosaccharides?
no. a-amylase only creates smaller polysaccharides and oligosaccharides.
What has to happen before carbohydrates can be absorbed into the blood stream?
they need to be broken down by glycosidases at the intestinal brush border into monosaccharides.
What are the main intestinal glycosidases? (5)
glucoamylase, maltase, isomaltase, sucrase, and lactase.
What are the criteria for glucoamylase activity?
a-1,4 linkages, glucose, terminal bonds
What two products does glucoamylase activity produce?
glucose and isomaltose
What are the criteria for maltase activity?
a-1,4 linkages, glucose-glucose bonds in maltose (disaccharide)
What are the criteria for isomaltase activity?
a-1,6 linkages, glucose, internal bonds
What are the criteria for sucrase activity?
a-1,2 linkages, glucose-fructose bonds in sucrose (disaccharide)
What are the criteria for lactase activity?
B-1,4 linkages, glucose-galactose bonds in lactose (disaccharide)
Deficiency in what enzyme causes lactose intolerance?
lactase
The process of oxidating glucose to make ATP and pyruvate is known as…
glycolysis
The storage polymer of glucose is?
glycogen
The process of oxidating glucose to a pentose sugar and NADPH is known as…
pentose phosphate pathway
What two processes does the liver use to regulate blood glucose levels?
gluconeogenesis and glycogenolysis
Does skeletal muscle play a role in maintaining blood glucose levels?
no. glycogen breakdown in muscle only serves to meet the glucose needs of the fatiguing muscle.
What is the normal range for blood glucose levels?
80-100 mg/dL
Decrease in blood glucose triggers release of what? What does it do?
glucagon. mobilizes fluels - increases gluconeogensesis, glycogen breakdown, lipolysis.
Increase in blood glucose triggers release of what? What does it do?
insulin. stores fuels - increases glycogen synthesis, fatty acid synthesis, triglyceride synthesis
What kind of energy do autotrophs convert? What are their substrates?
solar energy to chemical energy. they convert CO2 and H2O to glucose and O2 using pigments and a photon.
Heterotrophs convert what type of energy?
chemical energy to heat (IR)
Describe the second law of thermodynamics?
entropy never decreases and systems evolve towards maximum entropy (including spontaneous reactions).
How do organisms apply to the second law of thermodynamics?
organisms disorder their environment by releasing IR heat more than they order themselves. S(universe) = S(system) + S(surroundings)
What types of bonds does ATP contain?
phosphodiester bond (between a-phosphate and suar) and 2 phonsphoanhydride bonds (high energy)
What are the three reasons the phosphoanhydride bond releases so much energy?
- charge repulsion is relieved
- resonance stabilization of products
- favorable interactions with water
How quickly is the ATP pool turned over?
1/2 of the pool every hour!
What are the three necessary work functions?
mechanical, transport, and biosynthetic work.
How does ATP meet our energy requirements at all times?
ATP immediately, carbohydrates intermediately, fats and lipids in the long term.
What two ATP functions are humans incapable of doing?
gas expansion (bombardier beetle) and bioluminesence (fireflies)
Why is ATP the primary energy carrier? (4 reasons)
- 2 phosphyanhidride bonds to break (high energy)
- soluable and mobile (readily diffusible)
- high affinity binding to enzymes (structure)
- recognizable by adenosine base (can compartmentalize energy stores)
What determines the rate of a chemical reaction?
the activation energy
Is the reaction for ATP hydrolysis (uncatalyzed) spontaneous?
No. the activation energy cannot be overcome.
How do enzymes change the rate of reactions? What other ability do they have?
They lower the activation energy height (while preserving the deltaG). The enzyme also has control over the expression of the products of the reaction.
Can ATP act as an energy donor or acceptor?
Both! it has an intermediate thermodynamic value - meaning it has higher energy phosphate compounds and low energy phosphate compounds.
What does the common intermediate principle state?
exergonic reactions are obligatorily coupled to endergonic reactions by virtue that they have a common intermediate (ATP)
How does the enzyme involved in ATP hydrolysis change the overall energy requirements of the reaction?
The extra energy (compared to the uncatalyzed reaction) is stored in the high energy bond between the enzyme and product (E-P).
Can ATP readily be converted to other NTPs?
Yes! Exergonic reversible reactions can take place to convert ATP to other NTPs. The net energy is 0 because it is as simple as breaking and forming the same type of bond.
What enzyme is responsible for NTP conversion?
nucleoside diphosphate kinase (NDK)
How does the cell use ATP hydrolysis levels to monitor the energy state of the cell?
ATP generating pathways are inhibited by ATP and stimulated by ADP & AMP. ATP utilizing pathways are the opposite.
How does the cell decipher between ATP generating pathways and ATP utilizing pathways?
Enzymes have feedback inhibition due to allosteric binding of end products at the regulatory site (changing the catalytic site’s affinity for substrate).
What enzyme do muscles and nerves use to generate ATP? What are its substrates?
creatine kinase - phosphocreatine + ADP
What enzyme catalyzes the formation of ATP from two ADP?
adenylate kinase
What enzyme catalyzes the reaction of H2O and AMP to drive the reaction of adenylate kinase forward?
adenylate deaminase
In the first step of glycolysis, glucose is converted to what, by using what enzyme?
G6P, by hexokinase (glucokinase in liver)
In the second step of glycolysis, G6P is converted to what, by using what enzyme?
F6P, by phosphoglucose isomerase.
In the third step of glycolysis, F6P is converted to what, by using what enzyme?
FBP, by phosphofructose kinase.
In the fourth step of glycolysis, FBP is converted to what two products, by what enzyme?
DHAP (ketose) and GAP (aldose), by aldolase.
In the fifth step of glycolysis, DHAP is converted to what, and by what enzyme?
GAP, by triose-P isomerase.
In what steps of glycolysis is ATP necessary?
Step 1 (conversion of glucose to G6P), and step 3 (conversion of F6P to FBP)
In the sixth step of glycolysis, GAP in converted to what, by using what enzyme?
1,3 BPG by GAPDH
What kind of intermediate is formed in the GAPDH reaction?
Thioester intermediate
In the seventh step of glycolysis, 1,3 BPG is converted to what, by what enzyme?
3PG by phosphoglycerate kinase.
In the eighth step of glycolysis, 3PG is converted to what, using what enzyme?
2PG by phosphoglycerate mutase.
What kind of intermediate is formed in the phosphoglycerate reaction?
Phosphohistidyl intermediate.
In the ninth step of glycolysis, 2PG is converted to what, by what enzyme?
PEP by enolase
In the final step of glycolysis, PEP is converted to what, by using what enzyme?
Pyruvate by pyruvate kinase
In what step of glycolysis is NAD+ necessary?
Step 6 (GAP to 1, 3, BPG)
In what two steps of glycolysis is ATP produced?
Step 7 (1,3 BPG to 3PG) and step 10 (PEP to pyruvate).
How many net ATP does glycolysis produce?
2, 4 total, but 2 are used in the investment phase.
What are three ways that NAD+ in regenerated?
Lactic acid fermentation, alcohol fermentation, and the citric acid cycle.
At what intermediates doe fructose enter glycolysis as? How does it differ between muscle and liver?
In the muscle, fructose is phosyphorylated and enters as F6P. In the liver, it is first phosphorylated, then fructose-1-phosphate aldolase converts it to GAP.
Deficiency in what enzyme causes fructose intolerance characterized by liver damage and hypoglycemia?
Fructose-1 phosphate aldolase (aldolase B in Kaplan)
At what intermediate does mannose enter glycolysis? What 2 enzymes are necessary?
F6P using hexokinase and phosphomannose isomerase.
At what intermediate does galactose enter glycolysis?
G6P
Deficiency in what enzyme causes formation of galactitol, and causes cataracts?
Galactokinase
Deficiency in what enzyme causes mental retardation and liver failure due to buildup of UDP-glucose?
UMP transferase
What enzyme catalyzes the reaction of UTP and glucose-1 phosphate to form UDP-glucose in glycogen synthesis?
UDP-glucose phosphorylase
What enzyme pieces together UDP-glucoses together? What is the side product?
Glycogen synthase, and UDP is the side product.
What enzyme condenses glycogen by forming a1,6-linkages?
Branching enzyme
What is the goal of branching glycogen for storage?
Creating a storage molecule that is compact, but still has room for enzymes to react. It branches every 10 glucose residues
During glycogen breakdown, what enzyme phosphorylates glycogen to create glucose-1 phosphate?
Glycogen phosphorylase
Once glucose-1 phosphate is released, how does it enter glycolysis? Does it require energy?
It is converted to glucose-6 phosphate by phosphoglucomutase and doesn’t require energy.
What enzyme breaks the a1,6-linkage left by glycogen phosphorylase? Why is this reaction less favorable?
Debranching enzyme breaks the bond and the products are a glucose-1 phosphate (easily enter glycolysis) and glucose (which needs to be converted using hexokinase, and thus requiring ATP).
What is the energetic cost (in terms of ATP) to release G6P for glycolysis?
1 ATP (UTP) to use glycogen phosphorylase, and then an extra 0.1 ATP for every glucose that needs to be broken from an a1,6-linkage. 1.1ATP/1G6P
Von Gierke disease is a defect in what enzyme? What are the consequences?
G6P phosphatase, increased glycogen causing hepatomegaly, and failure to thrive
Anderson disease is a defect in what enzyme? What are the consequences?
Branching enzyme. Severe cirrhosis and death by age 2. Glycogen has very few branches.
McArdle disease is a defect in what enzyme? What are the consequences?
Glycogen phosphorylase. limited exercise tolerance due to muscle cramping, usually normal glycogen levels and structure.
The most high energy needy cells are found where?
Heart muscle, kidney for transport, and liver for biosynthesis.
Where within the mitochondrion does the citric acid cycle take place?
Mitochondrial matrix
Where within the mitochondrion does oxidative phosphorylation happen?
Inner mitochondrial membrane
How does pyruvate enter the mitochondria for the TCA cycle?
Through a transport protein.
Does NADH directly cross the mitochondrial membrane?
No, it is indirectly carried by a H transporter in the XH form then recombines with NAD+ in the matrix.
How does ATP cross the mitochondrial membrane?
An ADP/ATP antiporter.
Step 1 of the pyruvate dehydrogenase complex involves what enzyme? What prosthetic group is involved?
E1 pyruvate dehydrogenase, TPP (thiamine)
Thiamine deficiency is known as?
Beriberi or Wernicke’s encephalopathy (Wernicke-Korsakoff syndrome)
Step 2 of the pyruvate dehydrogenase complex involves what enzyme? What prosthetic group is involved?
Dihydrolipolyl transacetylase, lipoamide
Step 3 of the pyruvate dehydrogenase complex involves what enzyme? What prosthetic group is involved?
Dihydrolipoyl dehydrogenase, FAD
What product in the pyruvate dehydrogenase complex is the target in arsenic poisoning?
Dihydrolipoamide
What is the advantage of having the pyruvate dehydrogenase complex (swinging arm model)?
The rate of reactions are not limited by diffusion as all the necessary enzymes are attached.
Step 1 of the TCA cycle combines what with acetyl CoA to make citrate? What enzyme is used?
Citrate synthetase combines oxaloacetate with acetyl CoA with make citrate. It is a condensation reaction.
Step 2 of the TCA cycle converts citrate to what? Using what enzyme? Is there an intermediate? What kind of reaction is this? What is the cofactor?
Aconitase converts citrate to cis-aconitase (intermediate), then eventually to isocitrate using a hydration and dehydration reaction. The cofactor is FeS center.
Step 3 of the TCA cycle converts isocitrate to what? Using what enzyme?
Isocitrate is converted to a-ketoglutarate by isocitrate dehydrogenase via oxidative decarboxylation. NADH and CO2 is a byproduct of the reaction.
Step 4 of the TCA cycle converts a-ketoglutarate to what? Using what enzyme? What type of reaction? What are the cofactors?
A-ketoglutarate is converted to succinyl CoA by a-ketoglutarate dehydrogenase via oxidative decarboxylation. NADH and CO2 is a byproduct of the reaction. TPP, lipoic acid, and FAD are cofactors.
Step 5 of the TCA cycle converts succinyl CoA to what? Using what enzyme? What type of reaction? What are the byproducts?
Succinyl CoA is converted to succinate using succinyl CoA synthetase via substrate level phosphorylation and the common intermediate principle. GTP is a byproduct.
Step 6 of the TCA cycle converts succinate to what? Using what enzyme? What are the byproducts?
Succinate is converted to fumarate by succinate dehydrogenase via oxidation. FADH2 is a byproduct.
Step 7 of the TCA cycle converts fumarate to what? Using what enzyme?
Fumarate is converted to malate using fumarase via decarboxylation.
Step 8 of the TCA cycle converts malate to what? Using what enzyme? What is the byproduct?
Malate is converted to oxaloacetate using malate dehydrogenase via oxidation. NADH is a byproduct.
In one turn of the TCA cycle (1 pyruvate) how many electron carriers are produced? ATP? CO2?
3 NADH and 1 FADH2, 1 GTP, and 2 CO2
In what step of the TCA cycle is ATP produced?
Succinyl CoA synthetase converting succinyl CoA to succinate.
What are the overall functions of the TCA cycle? (4)
- converts products to common fuel (NADH/FADH2)
- makes ATP and NADH while converting glucose to pyruvate
- serves as a meeting place for all oxidizable substrates
- provides intermediates for biosynthesis
Where are the pentose phosphate pathway enzymes found?
Cytosol.
What are the important products of the pentose phosphate pathway?
ribose-5-phosphate and NADPH.