Lipids Flashcards
(108 cards)
What are lipids?
- Amiphipathic: mostly hydrophobic, but with a polar or charged region
- Usually not water soluble
- Do not form large, covalent polymers
- Tend to form non-covalent higher-order structures
- Sequester (hide) from the hydrophobic hydrocarbon component(s) from the polar aqueous environment
- Stabilised by Van der Waals interactions between the hydrocarbon parts
Key points about fatty acids
Weak acids: deprotonated at physiological pH
Alkyl chains may be:
- Saturated (fully reduced, no C=C)
- Unsaturated (some C=C)
Monosaturated: one double bond
Polysaturated: many double bonds
Bonds of saturated and unsaturated fatty acids
Saturated hydrocarbon chains can rotate freely about any C-C bond. (they do not have C=C bond)
Unsaturated hydrocarbon chains cannot rotate around the double bond. The double bond is usually cis, which makes the hydrocarbon chain bend.
Number of carbon atoms in fatty acids
Most naturally occurring fatty acids have an even number of carbon atoms because fatty acid synthesis involves adding two-carbon units
Fatty acid interactions depend on their structure
Van der waals forces between the fatty acids
Long fatty acid tails have more interactions, are stronger and therefore harder to break apart.
Short fatty acid tails have fewer interactions, are weaker, and easier to break apart.
Longer aliphatic carbon chains promote van der waals interactions -> higher melting temp
What about unsaturated fatty acids?
Unsaturated fatty acids are bent and cannot pack so well together:
- fewer van der waals interactions can form
- lower melting temp
Essential fatty acids
α-linolenic acid (ALA):
This is an omega-3 (ω-3) fatty acid.
The diagram shows that this fatty acid has double bonds at positions 9, 12, and 15 (as indicated in red), counting from the carboxyl end. The ω-3 designation comes from the position of the first double bond, which is three carbons away from the omega (methyl) end of the fatty acid chain.
Linoleic acid:
This is an omega-6 (ω-6) fatty acid.
The diagram shows double bonds at positions 9 and 12 (also indicated in red), and the ω-6 refers to the location of the first double bond being six carbons away from the omega end of the chain.
Essential fatty acids
Where do we get essential fatty acids from?
Sources of essential fatty acids include:
Seeds: Chia, flax, hemp, poppy, sesame
Oils derived from these seeds and other vegetable oils
Nuts: Particularly walnuts, which are rich in essential fatty acids.
What do essential fatty acids do?
Source of signaling molecules:
Eicosanoids: These are signaling molecules that play a crucial role in regulating inflammation and other cellular functions. They are derived from omega-3 and omega-6 fatty acids.
Endocannabinoids: These molecules, also derived from essential fatty acids, affect mood, behavior, and inflammation, interacting with the endocannabinoid system in the body.
Part of lipids that form signaling rafts in cell membranes:
Essential fatty acids are involved in forming specialized structures in cell membranes called lipid rafts, which help organize signaling molecules and regulate various cell functions.
Regulation of transcription factors:
Essential fatty acids can activate or inhibit transcription factors like NF-κB, which is involved in the regulation of genes linked to inflammation and immune responses (such as inflammatory cytokine production).
Micelles
Fatty acids are amphiphilic molecules, meaning they have both hydrophobic (water-repelling) and hydrophilic (water-attracting) parts.
The hydrophobic tail (nonpolar) of the fatty acid avoids water, while the hydrophilic head (polar) interacts with water.
In an aqueous environment, fatty acids self-assemble into a micelle structure, where the hydrophobic tails are shielded from water in the center of the micelle, and the hydrophilic heads face outward toward the water. This forms a spherical shape.
Lipid Bilayers (Membranes)
Phospholipids (which include glycerol- and sphingolipids) have a similar amphiphilic structure but tend to be more cylindrical due to the presence of two hydrophobic tails instead of one.
These lipids self-assemble into bilayers, which are the foundation of cell membranes.
In this structure, the hydrophobic tails face inward, away from water, while the hydrophilic heads face outward on both sides of the bilayer, interacting with the aqueous environment.
Key Properties
Amphiphilic nature: This is what allows fatty acids, glycerolipids, and sphingolipids to self-assemble into organized structures like micelles and bilayers.
Micelles typically form when fatty acids or detergents are present, while lipid bilayers form the structural basis of cell membranes.
These structures are crucial for the key properties of membranes, such as selective permeability, fluidity, and the ability to create compartments within cells.
Structure of biological membranes
Phospholipid Bilayer:
The cell membrane is primarily composed of a phospholipid bilayer.
Each phospholipid has a hydrophilic head (which interacts with water) and two hydrophobic tails (which avoid water).
In the bilayer, the hydrophobic tails face inward, away from water, while the hydrophilic heads face the aqueous environment on both sides of the membrane (extracellular fluid and cytoplasm).
Cholesterol:
Cholesterol molecules are interspersed within the phospholipid bilayer.
They play a crucial role in increasing membrane fluidity and stabilizing the membrane by preventing the fatty acid tails of the phospholipids from sticking too closely together.
Proteins in the Membrane:
Integral proteins (including protein channels and transport proteins) are embedded within the membrane and can span the entire bilayer. These proteins assist in the movement of molecules and ions across the membrane.
Peripheral proteins are attached to the surface of the membrane, often interacting with other membrane components, such as the cytoskeleton.
Glycoproteins and glycolipids are proteins and lipids with carbohydrate chains attached, playing roles in cell recognition, signaling, and communication.
Cytoskeleton:
The membrane is supported by the cytoskeleton, a network of protein filaments that provides structural support and helps maintain the shape of the cell.
Membrane Fluidity:
The fluid nature of the membrane allows for dynamic movement of its components, enabling processes like membrane fusion, vesicle formation, and protein movement.
Structure of the Lipid Bilayer
Structure of the Lipid Bilayer:
Bilayer Arrangement:
The lipid bilayer consists of two layers of phospholipids. Each phospholipid has a hydrophilic head (which interacts with water) and hydrophobic tails (which avoid water).
The hydrophobic tails of the two layers face inward, forming the hydrophobic core of the membrane, while the hydrophilic heads face the aqueous environments inside and outside the cell.
Hydrophobic Core:
The hydrophobic core, which is about 30 Ångstroms (Å) thick, is the region formed by the fatty acid tails of the phospholipids. This core is impermeable to most polar or charged molecules, contributing to the membrane’s selective permeability.
Interfacial Regions:
These are the regions where the hydrophilic heads of the phospholipids interact with the surrounding aqueous environment (extracellular fluid and cytoplasm). These interfacial regions are crucial for the membrane’s interaction with other molecules and ions.
Overall Thickness:
The total thickness of the lipid bilayer is approximately 60 Å. This includes the hydrophobic core and the interfacial regions. The bilayer’s structure provides both stability and flexibility to the membrane.
Two major states of lipid bilayers
- Gel State (Below the Transition Temperature, Tₘ):
When the temperature is below the transition temperature (Tₘ), the lipid bilayer is in a more ordered, solid-like state.
In this state, the hydrocarbon tails of the lipids are tightly packed together in a highly organized, rigid structure, similar to a gel.
The membrane is less fluid, meaning that the movement of individual lipid molecules and proteins within the bilayer is significantly restricted. - Liquid Crystal State (Above the Transition Temperature, Tₘ):
When the temperature is above Tₘ, the lipid bilayer shifts to a liquid crystal state.
In this state, the hydrocarbon tails are less tightly packed, and the interior of the membrane becomes more dynamic, resembling a liquid hydrocarbon.
This increased fluidity allows for greater movement of the lipid molecules and embedded proteins, which is essential for various membrane functions, including transport, signaling, and flexibility.
Role of Heat
Heating the membrane causes the transition from the gel state to the liquid crystal state, increasing membrane fluidity.
Cooling causes the reverse transition, moving the membrane back to a more rigid, gel-like state.
Biological lipid bilayers are dynamic
- Lateral Movement:
Lipids and proteins within the bilayer can move laterally, allowing for the fluidity of the membrane. This lateral movement enables the redistribution of membrane components, essential for processes such as cell signaling, membrane fusion, and the formation of lipid rafts. - Membrane Fluidity:
The fluidity of the membrane is influenced by temperature, the composition of fatty acids (saturated vs. unsaturated), and the presence of cholesterol. Membranes must maintain an optimal balance of fluidity for proper function—too rigid and they lose flexibility; too fluid and they lose structural integrity.
Building blocks of membrane lipids
Head Group:
The head group is hydrophilic (water-attracting) and interacts with the aqueous environments on either side of the membrane.
This section is composed of:
Phosphate group: Attached to the backbone, the phosphate group provides a charged, polar end that interacts with water.
Rest of the head group: This varies depending on the specific type of phospholipid. It could include molecules like choline, ethanolamine, serine, or inositol. In the diagram, it shows a choline group.
Backbone:
(can be glycerolipid or glycolipids)
The backbone in most phospholipids is glycerol, a three-carbon molecule that connects the fatty acid tails to the head group.
Glycerol serves as the central scaffold to which the fatty acid tails and phosphate group attach.
Fatty Acid Tails:
These tails are hydrophobic (water-repelling) and form the inner, nonpolar part of the lipid bilayer.
The diagram shows two specific fatty acids attached to the glycerol backbone:
Palmitate: A saturated fatty acid, which means it has no double bonds in its hydrocarbon chain, making it straight.
Oleate: An unsaturated fatty acid, which has one or more double bonds, creating a kink in its structure.
These fatty acid tails determine the fluidity of the membrane—saturated fatty acids make the membrane more rigid, while unsaturated fatty acids increase fluidity.
Sphingosine Backbone
C1: Has a hydroxyl group (OH), to which a head group can be attached.
C2: Has an amino group (NH₂), which can attach to a fatty acid. This forms an amide bond in sphingolipids.
C3: Already has a hydrocarbon chain attached (shown in yellow), making sphingosine naturally hydrophobic in this region. This chain is long and contributes to the structure and fluidity of sphingolipids in membranes.
Glycerol Backbone
C1: Has a hydroxyl group (OH), to which a head group (like phosphate and a molecule such as choline) can attach, forming the hydrophilic portion of the lipid.
C2: Also has a hydroxyl group (OH), which can attach to a fatty acid.
C3: Has another hydroxyl group (OH), to which a second fatty acid can be attached.
Basic structure of a glycerophospholipid
Location in the Plasma Membrane:
Under normal conditions, phosphatidylserine is located in the inner leaflet of the cell’s plasma membrane, meaning it faces the inside of the cell.
Movement During Apoptosis:
When a cell undergoes apoptosis, phosphatidylserine is translocated to the outer leaflet of the membrane, exposing it to the extracellular environment. This movement acts as a signal for phagocytes (cells that engulf and digest dying cells) to recognize and clear the dying cell.
Attracting Phagocytes:
The exposure of phosphatidylserine on the outer membrane serves as an “eat me” signal, attracting phagocytes to consume the remnants of the apoptotic cell.
Phosphatidylserine binds to various receptors on the surface of phagocytes, including MFG-E8, Annexin I, and other receptor proteins, facilitating the recognition and engulfment of the apoptotic cell.
Phagocyte-Cell Interaction:
The diagram also shows interactions between apoptotic cells and phagocytes, highlighting several receptor-ligand interactions that help phagocytes recognize the dying cells.
Receptors like TREM2, Mannose receptor, LRPs, and integrins bind to proteins and lipids on the apoptotic cell, facilitating the process of phagocytosis.
Cholera (Vibrio cholerae)
Pathological Condition:
Cholera is characterized by severe diarrhea due to the action of the cholera toxin produced by the bacterium Vibrio cholerae.
Gangliosides (GM1):
Cholera toxin specifically recognizes and binds to gangliosides, particularly GM1 gangliosides, which are glycolipids found in the lipid rafts of the cell membrane.
This binding facilitates the entry of the cholera toxin into the host cell. The lipid rafts, which are specialized microdomains of the cell membrane rich in cholesterol and glycosphingolipids, assist in the internalization of the toxin.
Cell Entry Mechanism:
Once bound to GM1, the toxin is internalized via caveolae or clathrin-mediated endocytosis and other endocytic pathways. It is then transported to the early endosome (EE) or recycling endosome (RE).
The toxin is eventually routed to the trans-Golgi network (TGN) and then to the endoplasmic reticulum (ER), where it can exert its pathological effects, such as disrupting ion balance and causing diarrhea.
Enterotoxigenic E. coli (ETEC)
Pathology:
ETEC is a common cause of diarrhea, similar to cholera, and produces a toxin that operates through a comparable mechanism.
Ganglioside Binding:
Like cholera toxin, the ETEC toxin also binds to gangliosides on the host cell membrane to gain access to the cell. This allows the bacterium to deliver its pathogenic toxin into the host and cause symptoms.
Normal Intestinal Water Secretion:
Chloride ion secretion drives the normal process of water movement into the small intestinal lumen. This helps maintain a balance of fluid in the intestines, necessary for digestion and nutrient absorption.
Under normal conditions, most of the water secreted into the small intestine is reabsorbed before it reaches the large intestine, preventing excessive fluid loss.
How Cholera Toxin Disrupts this Balance:
Cholera Toxin Binding:
Vibrio cholerae releases cholera toxin, which binds to GM1 gangliosides on the surface of intestinal epithelial cells.
Activation of G Protein:
The cholera toxin activates the Gsα subunit of the G protein, which in turn activates adenylate cyclase (AC) inside the cell. This results in an increased production of cyclic AMP (cAMP).
Chloride Ion Secretion Increases:
The elevated levels of cAMP cause the CFTR (Cystic Fibrosis Transmembrane Conductance Regulator) chloride channels to open, leading to an excessive secretion of chloride ions (Cl⁻) into the intestinal lumen.
Water Follows Ions:
As more chloride ions are secreted into the lumen, sodium ions (Na⁺) and water follow due to osmotic forces. This leads to large volumes of water being drawn into the intestinal lumen.
Diarrhea Occurs:
When the amount of water secreted into the lumen exceeds the intestines’ capacity to absorb it, diarrhea results. In cholera, this can become extreme, leading to severe dehydration and potentially life-threatening electrolyte imbalances.