Lecture Reviewer Flashcards
It explains the flow of genetic materials in organisms.
Central Dogma
It uses DNA as a template to produce another DNA.
Replication
It uses DNA as the template for the synthesis of an RNA.
Transcription
It uses RNA as the template for the synthesis of a protein.
Translation
It is an
RNA-driven DNA synthesis.
Reverse Transcription
3 major steps in DNA replication, transcription, and translation.
Initiation
Elongation
Termination
An enzyme that unwinds the double helix of the DNA and splits it open.
DNA Helicase
This enzyme relieves the tightening of the supercoil to prevent DNA damage.
Topoisomerase
It stabilizes the unwound DNA, preventing them from re-annealing.
Single-strand Binding Protein (SSB)
This enzyme adds a short piece of RNA at the 3’ end of the DNA to serve as a primer.
RNA primase
A strand of DNA where the addition of nucleotides is continuous.
Leading Strand
A strand of DNA where several RNA primers are required to gradually guide the DNA polymerase.
Lagging Strand
It is involved in the initial addition of DNA nucleotides.
DNA polymerase ɑ (alpha)
It adds DNA nucleotides to the leading strand.
DNA Polymerase ɛ
(epsilon)
It adds DNA nucleotides to the lagging strand, and is also responsible for proofreading and nipping the RNA primer, initiating removal.
DNA polymerase δ (delta)
It adds DNA nucleotides to both strands and is only found in prokaryotes.
DNA Polymerase III
It detaches the short RNA primer.
Flap Endonuclease 1 (FEN1)
It coats the long flap of RNA primer; prevents FEN1, and helps DNA2.
Replication Protein A
It cleaves the long RNA primer, making it shorter for final cleaving by FEN1.
Dna2 Endonuclease
Short DNA segments that are formed between the RNA primers.
Okazaki Fragments
It binds the Okazaki fragments together to form a single continuous DNA strand.
DNA ligase
The DNA strand that contains the code is referred to as _______.
Sense strand
Its
complementary DNA strand is called _______ and it serves as the template for transcription.
Antisense strand
TFIIs that comprise the pre-initiation complex.
TFIID, TFIIA, TFIIB, TFIIF
It is the first transcription factor that
binds to the TATA box.
TFIID
Once attached, it bends the promoter
by 80o, which helps in the binding of
TFIIA and TFIIB.
TATA Box-binding protein (TBP)
It stabilizes TFIID.
TFIIA
It interacts with TBP molecule and
recruits the RNA Polymerase II.
TFIIB
It assists in the binding of the RNA
Polymerase II on the promoter
TFIIF
TFIIs that comprise the open complex.
TFIIE, TFIIH
It binds to the pre-initiation complex
and helps the binding of TFIIH.
TFIIE
It splits open the promoter.
TFIIH
It adds RNA nucleotides to antisense strand.
RNA Polymerase
This is the process of modifying
the terminal nucleotide of the
pre-mRNA.
5’ capping
It removes terminal phosphate at 5’ end.
RNA Triphosphatase
It attaches guanyl phosphate to 5’ end.
Guanylyl Transferase
It attaches methyl group to guanine nucleotide.
Methyl Transferase
It is the final structure formed at the 5’ end, which protects the pre-mRNA from degradation and is also important for translation.
5’ cap or Methylguanosine cap:
It cleaves the pre-mRNA and separates it from the RNA Polymerase II.
Cleavage Stimulation Factor (CstF)
Similar to the 5’ end, the 3’ end is also protected.
3’ Poly (A) Tail
It recruits Poly A polymerase.
Cleavage & Polyadenylation Specificity Factor
It adds about 200 adenine(A) residues at the 3’ end of the pre-mRNA giving rise to the Poly (A) Tail.
Poly A Polymerase
It binds to the poly A tail to prevent the
degradation of the 3’ end of the pre-mRNA
Poly A-binding protein
It is the coding sequence of the Pre-mRNA.
Exons
It is the non-coding sequence of the Pre-mRNA.
Introns
It is where a newly-made pre-mRNA transcript is transformed into a mature mRNA.
Splicing
It cuts off the introns and joins the remaining exons to form the final or mature mRNA.
Spliceosome
Three types of RNAs that participate in the process of translation.
mRNA (messenger
RNA)
rRNA (ribosomal RNA)
tRNA (transfer RNA)
eIFs that bind to small subunits of the ribosome.
elF-1, elF-1A, elF-3
eIFs that bind to 5’ cap and poly A tail, respectively.
elf-4E & elF-4G
eIFs that carry mRNA to small subunit of the ribosome.
elF-4A & elf-B
eIF that carries initiator met-tRNA to the P site.
elf-2
eIF that detaches elF-2 and signals the large ribosomal subunit.
elF-5
The site for attachment of tRNA carrying an amino acid.
A- site (Aminoacyl Site)
The site where tRNA with an amino acid forms a peptide bond to form an amino acid chain.
P-site (peptidyl site)
The site where tRNA with no amino acid exits the ribosome.
E-site (exit site)
It binds amino acid to tRNA.
Aminoacyl Synthetase
Initial complex is the ______.
met-tRNA
It is the transfer of one or more amino acids between peptides.
Transpeptidation
It catalyzes the binding of the second amino acid to the first
(methionine) amino acid by forming a peptide bond.
Peptidyl Transferase
A process where the ribosome moves to the next codon.
Translocation
This is a complete set of relationships among amino acids and codons, which is summarized in a table.
Genetic Code
What happens when the ribosome reaches the stop codon?
Translation is terminated / stopped.
What are the stop codons?
UAG, UAA, UGA
It binds to the stop codon.
Cytoplasmic Termination Factor (CTF) / Cytoplasmic Release Factor (CRF)
It binds the amino acid chain to the water molecule, which detaches the a.a. chain from the mRNA.
Peptidyl Transferase
In reverse transcription, this is used as a template to synthesize DNA strands.
Viral RNA
In reverse transcription, this is used as a template to synthesize DNA strands.
Viral RNA
What are steps in reverse transcription?
Refer to pp. 15-16 of Module 3.1 / slide 34-38 in PPT of central dogma.
This is a system of genes that regulates gene expression.
Operon System
These are adjacent structural genes that code for required proteins.
Cistrons
A component of the Operon system that controls transcription.
Operator
It promotes RNA Polymerase binding.
Promoter
It is a type of inducer operon system.
Lactose (Lac) Operon System