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Microbiology > Lecture Quiz #2 > Flashcards

Lecture Quiz #2 Flashcards

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Biology 101 flashcards
1
Q

Give an example of a solute

A

Sodium chloride

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2
Q

Define halophile and osmotolerance

A

Halophile: loves salts
Osmotolerance: has a salt limit

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3
Q

Define acidophile, neutrophil, and alkaliphile

A

Acidophile: Likes acidic environments
Neutrophil: Likes neutral environments
Alkaliphile: Likes basic environments

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4
Q

Define psychrophile, mesophile, thermophile

A

Psychrophile: Likes extreme cold
Mesophile: Likes moderate temperatures
Thermophile: Likes extreme heat

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5
Q

Define piezophile (barophile)

A

Likes high-pressure environments

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6
Q

Define obligate aerobe, obligate anaerobe, and microaerophile

A

Obligate aerobe: Needs lots of air/ oxygen
Obligate anaerobe: Needs no air/ oxygen
Microaerophile: Likes a little air/ oxygen, but not a lot

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7
Q

Define metabolism

A

The total of all chemical reactions occurring in the cell

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8
Q

Define anabolism and catabolism

A

Anabolism: the biosynthesis of new organic molecules from smaller organic and inorganic compounds
Catabolism: breaking down of molecules into smaller units while releasing energy, ‘fueling reactions’

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9
Q

Microbes are big producers of what two elements?

A

Oxygen and nitrogen

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10
Q

Define and give examples of the 3 types of cellular work

A

1) Chemical: synthesis of complex biological molecules
2) Transport: taking up nutrients, eliminating wastes, and maintaining ion balances
3) Mechanical: movement of structures that are part of the cell (motility, rotation of flagella, partitioning of chromosomes)

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11
Q

Define chemoorganotroph, chemolithotroph, and phototroph

A

Chemoorganotroph: energy source is organic molecules
Chemolithotroph: energy source is inorganic molecules
Phototroph: energy source is light

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12
Q

Define autotroph and heterotroph

A

Autotroph: Carbon source is CO2
Heterotroph: Carbon source is organic molecules

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13
Q

Define organotroph and lithotroph

A

Organotroph: electron source is organic molecules
Lithotroph: electron source is inorganic molecules

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14
Q

The most commonly used practical form of energy is?

A

ATP

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15
Q

Give 3 examples of altered ATP, and briefly describe how altering ATP works

A

-Guanosine, cytidine, uridine
-Enzymes hydrolyze bonds and alter original triphosphate molecule of ATP to make different energy sources

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16
Q

Name the basic purposes of GTP, CTP, and UTP (guanosine, cytidine, uridine)

A

GTP: protein synthesis
CTP: lipid synthesis
UTP: peptidoglycan, and polysaccharide synthesis

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17
Q

Give 5 examples of cellular processes that are exergonic reactions.

A

Aerobic respiration
Anaerobic respiration
Fermentation
Phototrophy
Chemolithotrophy

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18
Q

Give 3 examples of cellular processes that are endergonic reactions

A

Chemical work
Transport work
Mechanical work

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19
Q

Give 4 examples of carbon sources

A

CO2, sugars, amino acids, and fatty acids

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20
Q

Define substrate level phosphorylation

A

The generation of ATP (or GTP/UTP, etc)) from ADP (or GDP/ UPT, etc) by chemical reaction

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21
Q

Define oxidative phosphorylation

A

An alternative way to create ATP generated by a proton gradient

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22
Q

Define oxidation-reduction (redox) reactions

A

Electrons move from an electron donor to an electron acceptor

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23
Q

The ETC (electron transport chain) of bacteria is very similar to that of what?

A

Mitochondria

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24
Q

Describe the chemiosmotic hypothesis and how it relates to the ETC

A

As electrons move through the chain, energy is generated; this energy allows protons to be pumped across the membrane to create electrochemical gradient. This gradient (charge separation) is the energized state called Proton Motive Force

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25
Q

Give a quick 5 bullet-point synopsis of what happens during the ETC

A

1) NADH is an electron donor
2) A series of redox reactions that pump protons through the membrane
3) The electrochemical gradient is established
4) Oxygen is the final electron acceptor
5) ATP synthase accepts protons to generate ATP

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26
Q

What are the three pathways of glucose catabolism, and which is the most common?

A

1) Embden-Meyerhof pathway: most common
2) Entner-Doudoroff pathway: only in prokaryotes
3) Pentose Phosphate Pathway

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27
Q

Describe the Embden-Meyerhof pathway of glucose catabolism

A

-It’s an amphibolic pathway, which means it’s both anabolic and catabolic
-Starts with glucose, 2 ATP are used to generate 3 Glyceraldehyde 3-phosphate
-Fructose 1,6 biphosphate; glucose are involved
-Nicotinamide adenine dinucleotide
-Generates NADH, which is an electron donor
-Redox active coenzyme
-The end product of this pathway is pyruvate

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28
Q

Describe the Entner-Doudoroff pathway of glucose catabolism

A

-Only found in prokaryotes
-NADPH is generated in this pathway, which is also an electron donor
-The production of KDPG
-Part 1 end products are pyruvate and glyceraldehyde 3-phosphate
-Part 2 end product is pyruvate
-Creates 2 pyruvates, doesn’t create 2 extra ATPs like the embden-meyerhof pathway (but does still generate ATP)

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29
Q

Describe the Pentose Phosphate Pathway of glucose catabolism

A

-Starts with 3 glucose-6
-Changing the chemistry of sugar, ultimately ending up with pyruvate
-Know that the glyceraldehyde-3-p and 6-phosphogluconate are a part of the pathway
-Ancient origin; may be older than the other pathways. It’s carried out by enzymes in the cells, but can be done without them.

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30
Q

Describe the TCA Cycle (Aka Krebs Cycle, Aka Citric Acid Cycle)

A

-NADH is made right when it enters the cycle
-Acetyl-coenzyme A plays a large role
-GDP is broken down into GTP, which are the high-energy molecules
-FAD and FADH2 are and NAD and NADH are electron donors; there are 5 electron donors in the cycle
-The process oxides pyruvate into 3 carbon dioxides
-Generates GTP

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31
Q

Describe what happens to the ETC if we grow bacteria with low aeration in the stationary phase

A

Then there’s only a certain amount of oxygen to help the ETC run, so they generate less hydrogen and have to conserve

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32
Q

What is proton motive force driven by?

A

The proton gradient and active transport

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33
Q

What is the ATP yield from aerobic respiration, and what kind of phosphorylation do these ATP come from?

A

-Yields 32 ATP
-Primarily from oxidative phosphorylation, but also uses some substrate-level phosphorylation.

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34
Q

Define chemorganotropy

A

Anaerobic glucose metabolism

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35
Q

What is anaerobic glucose metabolism called?

A

Chemorganotrophy

36
Q

Describe the diversity of electron acceptors and why it’s important

A

-There’s a huge diversity of electron acceptors, which is important for the diversity of microbes in general.
-Diversity is impacted by nitrate waste that leaks from farms, factories, etc into the environment; nitrate occurs in oxygen depleted sediments and soils.

37
Q

What type of reaction is chemorganotrophy

A

A dissimilatory nitrate reduction (denitrification)

38
Q

What does chemorganotrophy break down, and what does three things does it break down into?

A

Nitrate > nitrite > nitric oxide > nitrogen gas

39
Q

Nitrites oxidate iron atoms in hemoglobin, which means _____ nitrite consumption can lead to poor oxygen

A

high

40
Q

What are the four unifying themes of fermentation?

A

1) NADH is oxidized to NAD+
2) Oxygen is not needed
3) Electron acceptor is pyruvate
4) ETC cannot operate, which leads to reduced ATP production

41
Q

What happens to pyruvate during fermentation, and why do people find this valuable?

A

Pyruvate is converted to lactate and/or X (which is then turned into Y); X & Y can be used in weapons production

42
Q

True or false: A lot of fermenters can be explosive, so they’re often used to manufacture weapons

A

True

43
Q

List 4 types of fermentation

A

1) Lactic acid fermentation (has two types)
2) Alcohol (ethanol) fermentation
3) Complex fermentation
4) Other fermentation substrates: variety of sugars, amino acids, and organic acids

44
Q

List and describe the two different types of lactic acid fementers

A

1) Homolactic fermenters: use the Embden-Meyerhof pathway to reduce pyruvate to lactate (lactate dehydrogenase). (tldr: only make lactate)
2) Heterolactic fermenters: also produce ethanol and CO2

45
Q

Briefly describe reactants and products of alcohol (ethanol) fermentation

A

Sugars > ethanol + CO2 (enzyme: alcohol dehydrogenase)

46
Q

Briefly describe the components of complex fermentation

A

Mixed acid (#1, 5, 6, 8, 9)
Butanediol (#1, 4, 5, 6, 9)

47
Q

Give examples of monosaccharides and disaccharides, and describe what monosaccharides do

A

Monosaccharides such as: lactose, mannose, fructose are modified by enzymes to make the sugar the enzyme wants to carry down the pathway
Disaccharides such as: maltose, sucrose, lactose, cellobiose

48
Q

List 4 other types of catabolism not otherwise talked about

A

Lipid catabolism, protein catabolism, fatty acid beta oxidation, and transamination

49
Q

Describe what happens in lipid catabolism and protein catabolism

A

1) Lipids: Tricylglycerols and other lipids are broken down with lipases into fatty acids
2) Proteins: Polypeptides are broken down by proteases into amino acids

50
Q

Describe what happens in fatty acid beta oxidation and transamination

A

1) Fatty Acid Beta Oxidation: 2 carbons are broken down for every fatty acid broken down because they’re good sources of electron donors, as well as acetyl-Coa.
-The fatty acid carbon sources can be extremely beneficial to the cell.
2) Transamination: If the cell is starving and needs pyruvate, they can take an amino acid and a-Ketoglutarate to for pyruvate and glutamate
-Intermediates of the krebs cycle are produced

51
Q

What are the energy and carbon sources in phototrophy?

A

Light is a source of energy; the pigments in the cell (chlorophyll b and bacteriochlorophyll a) trap light energy
Carbon source is often CO2

52
Q

Describe how pigments are important to phototrophy

A

-Alternating/ conjugated double bonds of the pigments allow for the generation of electron resonance (meaning they bounce from double bond to double bond)
-The types of chlorophyll have a great versatility in wavelength absorption

53
Q

In what types of organisms does oxygenic photosynthesis occur, and briefly describe its two stages

A

1) Occurs in plants, eukaryotic algae, and cyanobacteria
2) Photons initiate the transfer of electrons, then:
-Photosystem 1 traps light at longer wavelengths
-Photosystem 2 traps light at shorter wavelengths

54
Q

Photosystem 1 traps light at _____ wavelengths, and photosystem 2 traps light at ______ wavelengths

A

longer; shorter

55
Q

Give 5 examples of internal structures found in bacteria

A

Gas vacuole, ribosomes, inclusions, nucleoid, endospore

56
Q

What is the purpose of a gas vacuole?

A

Buoyancy for floating in aquatic environments

57
Q

What is the purpose of ribosomes?

A

Protein synthesis

58
Q

What is the purpose of inclusions?

A

Storage of carbon, phosphate, and other substances

59
Q

What is the purpose of the nucleiod?

A

Localization of genetic material (DNA)

60
Q

What is the purpose of an endospore, and in what type of bacteria are they found?

A

-Survival under harsh environmental conditions; only observed in bacteria
-Specifically only some gram-positive bacteria

61
Q

What are the 3 main components of the bacterial cytoskeleton, and what do they do?

A

1) FtsZ: A division protein widely observed in bacteria; forms a disc shape in the center of the cell
2) MreB: maintains cell (rod) shape, localizes proteins
3) Crescentin: introduces crescent-shaped morphology

62
Q

Name and briefly describe the density of 3 storage inclusions found in bacteria

A

1) Glycogen (sugar)
2) Polyhydroxyalkanoate granules: Very light
3) Polyphosphate granules: Very dense; store phosphate

63
Q

What is the purpose of vacuoles?

A

To store gas for buoyancy in an aquatic environment

64
Q

What do magnetosomes do?

A

Aid in orientation to seek nutrients; based on earth’s magnetic poles

65
Q

What is the purpose of carboxysomes?

A

A specialized site for CO2 fixation (a protein coat with an enzyme inside)

66
Q

There are as many as ________ ribosomes growing in a bacterial cell, whereas eukaryotes have up to ________

A

70K; 10 million

67
Q

Why is the difference in size and composition between a prokaryote and eukaryote important?

A

It’s important for antibiotics; they can pick out bacterial ribosomes and keep them from synthesizing proteins

68
Q

Describe bacterial nucleiods

A

-Most are circular
-No membrane
-Have proteins and histone-like proteins that interact and organize things

69
Q

Name 3 types of bacterial plasmids and briefly describe what they do

A

1) Conjugative plasmids: the F factor; transfers copies of themselves into another bacteria
2) R (resistance) plasmids: can be conjugative (transfered through bacterial “sex”); delivers antibiotic resistance genes
3) Virulence plasmids: encode genes for pathogenicity

70
Q

Some Gram-_________ bacteria are spore-formers

A

positive

71
Q

What is the purpose of sporulation, and what do spores contain?

A

1) Spores represent a dormant state for long-term survival; formation (sporulation) is induced by harsh environmental conditions
2) Spores contain the entire chromosome enveloped by a membrane, peptidoglycan and an outer protein coat (keratin-like)

72
Q

Certain conditions will cause spores to become activated; this is called _____________

A

germination

73
Q

What aspect of sporulation is useful in diagnosis?

A

The location of endospores

74
Q

Name 4 locations of endospores

A

1) Central
2) Swollen sporangium (makes cell somewhat sperm-shaped)
3) Terminal (at the end of a rod-cell)
4) Subterminal (almost at the end of a rod-cell)

75
Q

Why do we typically set autoclaves to 121 degrees celcius?

A

That’s the temperature that can kill endospores

76
Q

Briefly describe the morphology of protozoa, amoeba, and algae

A

Protozoa: motile due to cilia that cover their surface, heterotrophs
Amoeba: has a pseudopod and a contractile vacuole to control movement; prevents excess water inside the cell
Algae: have stored starch grains so they have carbon on-demand, use sunlight’s energy or can use organic compounds, extreme diversity, extremely abundant

77
Q

Describe the differences between passive and facilitated diffusion

A

1) Passive diffusion: Non-polar lipid-soluble substances diffuse passively from high to low concentration
2) Facilitated diffusion: can control specific (sugars, ions, charged polar molecules, ATP, etc) or nonspecific transport (water, glycerol, urea, etc), allows nutrients in and out.

78
Q

What are the two types of facilitated diffusion?

A

Specific and nonspecific transport

79
Q

Describe the rates of diffusion in passive and facilitated diffusion

A

The rate of transport is rather linear in passive diffusion, whereas the rate of transport in facilitated diffusion is very quick, but plateaus due to the saturation effect.

80
Q

Define active transport

A

Transport of a substance through a concentration gradient

81
Q

Define primary and secondary transport

A

Primary active transporters: use ATP for energy
Secondary transporters: use gradient for potential energy

82
Q

What does primary active transport utilize to move substances?

A

Uniport transport: The one-way transport of a single molecule

83
Q

Uniport transport is an example of __________ _______ transport, whereas antiport and symport transport are examples of _________ ________ transport.

A

Primary active transport; secondary active transport

84
Q

List and describe the two types of secondary transports

A

1) Antiport: 2 molecules are transported in different directions
2) Symport: 2 molecules are transported in the same direction
(Can be very complicated and involve multiple subunits or phosphate transfer)

85
Q

What do phosphotransfer systems (group translocations) require?

A

Has to have a series of phosphate handoffs, which generates energy and the ability to phosphorylate the sugar.

86
Q

Define siderophore and what it allows bacteria to do

A

-A molecule that binds to various forms of iron and makes it available to the cell
-This allows bacteria living in an animal to steal that creature’s iron

Microbiology (42 decks)

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