Lecture 7: Drivers of Emerging Disease Flashcards

1
Q
  1. Up to what percent of emerging diseases are zoonotic in origin?
  2. About what percent of all human pathogens are emerging?
  3. What fraction of new human pathogens are viruses?
A
  1. 75%
  2. 15%
  3. 2/3
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2
Q

What are the 5 stages through zoonotic diseases evolve to become primarily human pathogens?

A
  1. Stage 1: agent only in animals
    - No transmission to humans
  2. Stage 2: primary infection
    - Transmission to humans only from animals
  3. Stage 3: limited outbreak
    - From animals or a few humans
  4. Stage 4: long outbreak
    - From animals or many humans
  5. Stage 5: exclusive human agent
    - Only from humans
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3
Q

True or false: the emergence of a pathogen has multiple drivers.

A

True

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4
Q

What is the most common factor in outbreaks of new diseases with high mortality rates? Why?

A

Ecological changes and agricultural development
- Humans and their animals come closer in proximity to reservoirs of new diseases or their vectors

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5
Q

What drives ecological changes and agricultural development?

A
  • Increase in human population –> increase in demand for livestock or farming
  • Economic opportunity
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6
Q

List the following for Argentine hemorrhagic fever:
1. Causative agent
2. Reservoir
3. Transmission

A
  1. Junin virus
  2. Drylands vesper mouse/corn mouse
  3. Contact with rodent body fluids or excrement
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7
Q

Explain how Argentine hemorrhagic fever spread to humans/how outbreaks occur.

A
  • Grassland was converted to cornfields –> mice made homes in the cornfields
  • Epidemics occur during the corn harvesting season in autumn
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8
Q

List the following for Japanese encephalitis:
1. Causative agent
2. Reservoir
3. Transmission

A
  1. Japanese encephalitis virus
  2. Waterbirds
  3. Bite from Culex mosquitos
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9
Q

Explain how Japanese encephalitis spread to humans/how outbreaks occur.

A
  • Pigs serve as amplifying hosts and are associated with human outbreaks in rural agricultural areas
  • Pig population increases as pork consumption increases
  • Flooded rice fields attract waterbirds and serve as breeding ground for mosquitos
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10
Q

What is bushmeat and how are bushmeat activities linked to outbreaks?

A
  • Meat derived from wild animals for human consumption (important source of protein for many developing countries)
  • Greatest risk occurs when butchering animals
  • HIV, monkeypox, rabis, Ebola outbreaks
  • Lack of knowledge of risks and safety is the major driver
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11
Q

How do animal markets and factory farming contribute to outbreaks?

A
  • Animals are living in cramped and unhygienic conditions
  • Sick animals can easily transmit to nearby animals
  • Different animals in contact with each other increases the risk for spillover events
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12
Q

List some changes in demographics that act as drivers of emerging disease.

A
  • Human population increasing
  • Migration from rural areas to urban areas
  • War or disaster promotes migration
  • People are living longer
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13
Q

List the following for the reemergence of malaria in the Amazon region of Brazil:
1. Causative agent
2. Reservoir
3. Transmission

A
  1. Plasmodium falciparum and P. vivax
  2. Humans
  3. By mosquitos
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14
Q

Explain how the reemergence of malaria in the Amazon region of Brazil occurred.

A
  • Malaria was practically eradicated in the Amazon region by the 1950s
  • 1960s: new highways were built that linked the Amazon region with other parts of the country
  • 1970s: rise in agriculture settlements in the region
  • 1980s: discovery of gold led to mass migration
  • People with malaria brought the disease to the region
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15
Q

What changes in society/behaviors acted as drivers of emerging disease?

A
  • Sexual revolution in 1960s-70s lead to rapid emergence of STIs
  • Antibiotics –> people less scared of getting sick
  • Intravenous drug use
  • Unprotected sex, sex with multiple partners, not regularly testing, not taking preventative medication
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16
Q

Why do childcare settings propagate outbreaks?

A

Because children are in close contact with each other
- High risk of transmitting enteric infections, respiratory infections, and skin infections
- Family members get infected from the child

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17
Q

List the following for Kingella kingae
1. What it is
2. Transmission
3. Diseases it causes

A
  1. Gram-negative coccobacillus that largely colonizes the respiratory tract of children under the age of 4
  2. Person-to-person via respiratory secretions
  3. Bacteremia and skeletal infections
18
Q

How does poor health contribute to emerging disease?

A

Poor health, underlying conditions, AIDS, immunosuppressants and cancer increases the susceptibility to infection

19
Q

What has led to increased HAIs?

A
  • Invasive medical procedures, surgery, indwelling medical devices, prosthetics can introduce pathogens
  • Poor infection control measures can lead to the spread of microorganisms
  • Over usage of antimicrobials lead to resistance bugs
20
Q

1 in _____ hospital patients have a HAI and 1 in _____ nursing home residents have a HAI.

21
Q

In 2015, how many HAI cases in acute care were reported? How many of those with a HAI died?

A
  1. 687,000 cases
  2. 72,000
22
Q

How do HAIs spread?

23
Q

List the following for fungal meningitis associated with methylprednisolone injections.
1. Causative agent
2. Reservoir
3. Explain how the outbreak happened.

A
  1. Exserohilum rostratum (mainly) and other contaminants
  2. Environment
  3. September 2012: outbreak of fungal meningitis, joint infections, and other infections in the U.S.
    -14,000 methylprednisolone acetate (steroid) vials from the New England Compounding Center were contaminated with various environmental microbes
24
Q

How do non-pathogenic bacteria become pathogenic?

A

Horizontal gene transfer
- Bacteria acquire new pathogenic genetic material

25
What are the mechanisms of horizontal gene transfer. Explain them.
- Transformation: uptake of DNA from external surroundings - Conjugation: one cell transfers DNA to another cell via direct contact - Transduction: virus introduces foreign DNA to the cell
26
What are pathogenicity islands?
Large genomic regions coding for virulence factors that are present on the genomes of pathogenic bacterial strains but absent in nonpathogenic members of the same or related species
27
What are pathogenicity islands generated by?
Horizontal gene transfer
28
List the following for cholera: 1. Causative agent 2. Reservoir 3. Trasmission 4. How many serogroups are responsible for outbreaks? Which ones? 5. How do people typically die from cholera?
1. *Vibrio cholerae* 2. Marine and estuarine waters; humans 3. Consumption of contaminated waters by infected human species 4. 2 of 200 serogroups - O1 (most common) and O139 5. Dehydration (bacteria causes watery diarrhea) - Not toxins causing direct damage to cells
29
How did pandemic cholera emerge?
Non-pathogenic *V. cholerae* strains **acquired pathogenicity islands** VPI-1 and VPI-2 and the vibrio toxin (CTX) to become pathogenic (**via horizontal gene transfer**)
30
List the following for Legionaire's Disease: 1. Causative agent 2. Reservoir 3. Transmission
1. *Legionella pneumophilia* and other species 2. Waterborne 3. Aerosols from contaminated waters
31
How did Legionella become pathogenic?
- Ability to replicate in macrophages is due to virulence mechanisms it evolved to survive in its natural host (**amoebae**) - Selective pressures of living in amoebae drives the evolution of these virulence mechanisms ("training grounds")
32
Genetic diversity in viruses is driven by 2 ways. What are they?
1. Mutation 2. Genetic exchange - Recombination - Reassortment
33
A major driver in seasonal variation of influenza is _____.
antigenic drift
34
What is antigenic drift in influenza? How does it result in decreased immunity?
- Point mutations in the surface glycoprotein hemagglutinin (HA) - Epitopes on the HA are lost --> reduces antibody recognition --> decreased immunity
35
Why is the conservation of receptors in viruses a problem?
- Conserved within different animal species - Receptors are almost identical and few mutation on the viral proteins **may result in spillover**
36
Explain the H7N9 emergence.
- March 2013: Chinese authorities reported identification of a **novel zoonotic avian influenza A** - Outbreaks occurred in waves - Linked to **live bird markets** - Transmission: exposure to infected poultry and contaminated environment - No sustained human-to-human transmission
37
How did H7N9 become a human virus?
Virus initially only recognized **avian sialic acid receptors** (α-2,3 linkage) but acquired the ability to bind to **human sialic acid receptors** (α-2,6 linkage)
38
H7N9 is a new virus that resulted from _____.
multiple **reassortment events** of 3 different influenza viruses
39
When does reassortment occur?
- When segmented RNA viruses **co-infect a cell** - Results in new virions with mixed segments
40
Answer the following for Western equine encephalitis virus: 1. How is it transmitted? 2. Where are current infections localized? 3. What is the virus a result of?
1. Mosquitoes 2. Argentina and Uruguay 3. **Recombinant virus** from an ancestral Sindbis virus-like virus and an ancestral Eastern equine encephalitis virus-like virus
41
Diagram the evolution of SARS-CoV-2.