Lecture 6 - Horizontal Gene Transfer and Transposable Elements Flashcards

1
Q

What is horizontal gene transfer?

A

The movement of genetic material from one organism to another by other means than parent to offspring.

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2
Q

Give an example of how horizontal gene transfer has been detected.

A

In HMGCoA reductase gene in Archaean taxon, found to be acquired from bacterial lineage.

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3
Q

Where does yeast mitochondrial Heat Shock Protein 70 (hsp70) originate from?

A

S. cervisiae hsp70 more closely related to proteobacterial proteins than to other forms of yeast cells.

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4
Q

In what organisms does horizontal gene transfer normally occur?

A

Prokaryotes

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5
Q

Give an example of horizontal gene transfer in animals.

A

The coffee berry borer beetle has protein similar to mannanase, which breaks down a polysaccharide in coffee beans.
Mannanase has bacteiral origin.
Donor lineage is likely to be beetle’s own gut bacteria.

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6
Q

What kind of genes are transferred horizontally in prokaryotes?

A
  • Pathogenicity factors

- Antibiotic resistance genes

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7
Q

What is a transposable genetic element?

A

A genetic element that can move from one position on a chromosome to another position on the same or a different chromosome, many laving a copy behind.

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8
Q

Who discovered transposable elements?

A

Barbara McClintock, 1940s/50s

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9
Q

What were transposable elements originally thought to be?

A

Junk DNA

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10
Q

What is the aleurone layer of maize?

A

The coloured protein layer, which is triploid

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11
Q

How are genes inherited in maize?

A

Two sets of alleles inherited from maternal line, and one from paternal line.

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12
Q

What is special about chromosome 9 of maize?

A

Readily breaks and is correlated with colour change.

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13
Q

What are the roles of the following alleles in maize?

a) C’
b) C

A

a) C’ = dominant allele, prevents colour from being exposed to aleurone layer.
b) C = recessive allele, leads to colour development in layer.

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14
Q

What are the roles of the following alleles in maize?

a) Bz
b) bz

A

a) Bz = dominant allele, produces purple colour.

b) bz = recessive allele, produces dark brown colour.

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15
Q

What is the role of the Ds allele in maize?

A

It is the genetic location where chromosome breakage occurs.

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16
Q

What kind of kernel would you expect with the presence of a C’ allele in maize?
Why might you not?

A
  • A colourless kernel

- Due to breakage in some F1s, C’ is absent, resulting in pigmentation.

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17
Q

What causes partial colour in maize?

A
  • An unstable phenotype

- Movement of Ds into C’ site, disrupting some parts of the kernel.

18
Q

What are both Ac and Ds shown to be?

A

Class II transposons

19
Q

What activates Ds?

A

Ac

20
Q

Why is Ds activated by Ac?

A

It is a transposon with a mutation in its transposes gene, and is a non-autonomous element (needs something else present)

21
Q

What are Class 1 transposable elements?

A

Retrotransposons; those that go via an RNA intermedia.

22
Q

What are class 2 transposable elements?

A

DNA transposons.

23
Q

What percentage of the human genome is made up of transposable elements?

A

44.4%

24
Q

What is the c-value paradox?

A
  • Where c-value denotes the haploid DNA content

- Refers to the fact that observed complexity correlates very poorly with the haploid quantity of nuclear DNA.

25
Q

How many base pairs in the human genome?

A

3 billion

26
Q

How many mega-bases in the human genome?

A

3,200

27
Q

How many genes in the human genome?

A

26,000

28
Q

What percentage of the human genome is made up of protein-coding genes?

A

30%

29
Q

What percentage of the protein-coding DNA in humans is

a) Exons?
b) Introns?
c) Repetitive DNA?

A

a) Exons = 2%
b) Introns = 28%
c) Repetitive DNA = 45%

30
Q

True or false:

Number of proteins is less than the number of genes.

A

FALSE.

Number of proteins is greater than the number of genes.

31
Q

What can complexity be generated by?

A

Alternative splicing.

32
Q

What percentage of human genes can produce multiple different mRNA variants?

A

90%

33
Q

Give the size of the microsporidia genome.

A

2.9Mb

34
Q

In the microsporidia genome, how many of the following are there?

a) Chromosomes
b) Genes

A

a) 11 chromosomes

b) 1998 genes

35
Q

What is the size of the E coli genome?

A

5Mb

36
Q

What percentage of the microsporidia genome is

a) Protein-coding DNA?
b) Introns?

A

a) PCD = 86%

b) Introns = 0.02%

37
Q

Give the size of the Trichomonas vaginalis genome.

A

160Mb

38
Q

How many of the following are there within the Trichomonas vaginalis genome?

a) Chromsomes?
b) Genes?

A

a) 6 chromosomes

b) 60,000 genes.

39
Q

What does Trichomonas vaginalis not have that is present in the genome of humans?

A

A mitochondrial genome.

40
Q

What percentage of the T vaginalis genome is

a) Protein-coding genes?
b) Repetitive DNA?

A

a) PCG = 34%

b) RD = 66%

41
Q

What organism has the genome with the largest number of predicted proteins?

A

Trichonomas vaginalis