Lecture 5 Flashcards

1
Q

What did Archibald Garrod discover a connection in in 1902?

What was his area of research, and what happens in this condition?

A

Connected inherited human disorders with Mendel’s law of inheritance.
Alkaptonuria - urine turns from yellow to brown to black after being exposed in air.

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2
Q

What did Garrod observe?

A

Urine of alkaptonuria contains large amounts of homogentisic acid.
Alkaptonuria inherited in a Mendelian fashion (autosomal recessive).

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3
Q

What was Garrod’s hypothesis?

A

Patients lack enzyme necessary for breaking down homogentisic acid.
Lack of enzyme due to defect in gene.

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4
Q

What has the missing enzyme in alkaptonuria been identified as?

A

Homogentisic acid oxidase.

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5
Q

What did Beedle and Tatum identify?

A

Series of auxotrophic mutants after irradiating Neurospora spores with X-rays.

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6
Q

What are auxotrophs?

A

Mutant strains that cannot synthesise particular molecule required or growth, e.g. arginine, therefore will only grow when supplied with that molecule.

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7
Q

5 steps in screening for auxotrophic mutants?

A
  1. Culture individual spores on complete medium.
  2. Transfer to minimal medium (MM) to identify possible auxotrophs.
  3. Test candidates for growth on MM supplemented with different classes of nutrients (vitamins/amino acids/nucleotides).
  4. Test candidates for growth on MM supplemented with individual amino acids (or vitamins or nucleotides).
  5. Identify amino acid allowing mutant to grow.
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8
Q

What did Srb and Horowitz identify?

A

Three classes of arginine auxotroph.

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9
Q

What are the 3 classes of arginine auxotroph?

A

Class I -
MM + ornithine.
MM + citrulline.
MM + arginine.

Class II -
MM + citrulline.
MM + arginine.

Class III -
MM + arginine.

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10
Q

What is the interpretation of the Srb-Horowitz experiment?

A

Class I must be deficient in enzyme A - creating ornithine from precursor.
Class II must be deficient in enzyme B - creating citrulline from ornithine.
Class III must be deficient in enzyme C - creating arginine from citrulline.

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11
Q

What is the one gene, one enzyme hypothesis, and who was it coined by?
What is wrong with this hypothesis?

A

Each enzyme in a pathway was controlled by one gene.
Beadle and Tatum.
Not all gene products are enzymes, so “One gene - one polypeptide” more apt.

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12
Q

What provided evidence for mRNA?

A

Pulse-chase experiments.

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13
Q

How do pulse-chase experiments work?

A

15 min label with radioactive uracil shows concentration in nucleus.
15 min label with radioactive uracil then 90 minute chase with non-radioactive uracil shows it’s scattered across cytoplasm.

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14
Q

2 steps in gene expression?

A

Transcription (4 base to 4 base).

Translation (4 base to 20 amino acid).

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15
Q

What is transcription?

A

Synthesis of an mRNA molecule using one strand of the DNA as a template.

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16
Q

What catalyses transcription?

A

RNA polymerase.

17
Q

What happens at the initiation of transcription?

A

RNA polymerase binds to the promoter region and unwinds the DNA, starting to form an RNA transcript.

18
Q

What happens during elongation of transcription?

A

RNA polymerase moves along DNA template, unwinding the double helix and catalysing the addition of ribonucleotides to 3’ end of the RNA molecule.

19
Q

What happens at termination of transcription?

A

RNA polymerase picks up on termination signal in DNA, and stops.

20
Q

What is a codon?

A

Sequence of 3 bases that specifies an amino acid.

21
Q

Why is the genetic code specific?

A

Each codon codes for a single amino acid.

22
Q

Why is the genetic code redundant?

A

Several amino acids have more than one codon.

23
Q

Is the genetic code universal?

A

Almost!

24
Q

Which way is the genetic code read on the mRNA?

A

5’ to 3’.

25
Q

Does the protein sequence depend on the reading frame?

A

Yes.

26
Q

What is replication?

A

Synthesis of DNA.