lecture 4-5 Flashcards

1
Q

Overview of T cells development in the thymus and activation by foreign antigens

A

stages involve notch signalling

  • t cell precursor rearranges its t cell receptor genes in the thymus
  • immature t c3lls that recognise self mhc receive signals for survival. those that interact strongly with self antigen are removed from the repertoire
  • mature t cells encounter foreign antigens in the peripheral lymphoid organs and are activated
  • activated t cells proliferate and eliminate infection
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2
Q

what are the two lineages of T cells (thymocytes) produced in the thymus

A

CD4+ and CD8+
T-cell precursors proliferate extensively in the thymus.

Only a few percent of the precursors survive, most cells die there and are phagocytosed by macrophages in the thymic cortex

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3
Q

what is the thymus’ distinct cellular architecture

A

the structure is made up of lobules that have distinct areas outer cortical region and inner medullary region and different cells operate in different parts of the thymus.
In the outer cortical region, we’ve got immature thymocytes, cortical epithelial cells.
The medullary region has the vasculature which allows thymocyte entry, medullary epithelial cells dendritic cells and macrophages (responsible for getting rid of those thymocytes that perhaps recognize self-AG or self-MHC too strongly) and of course mature but naïve CD8+ or CD4+ T cells

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4
Q

describe what happens in the cortex and medulla

A

CORTEX
Immature thymocytes closely associate with branched cortical epithelia cells.
Macrophages get rid of apoptotic thymocytes

MEDULLA
Mature thymocytes associate with local dendritic cells – undergoing positive and negative selection
= Thymic education – mature CD8+ or CD4+.

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5
Q

what happens to thymocytes in the thymus

A

In the thymus, thymocytes undergo rearrangement of the TCR and changes in expression of cell surface molecules

Different stages of thymocyte differentiation are found in distinct parts of the thymus

DIAGRAM IN L4 S7

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6
Q

map the stages of TCR and what is being expressed on the cell surface to the stages of development
map the TCRαβ rearrangement in T cell development!

A

L4 S8-9

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7
Q

role of positive selection

A

Positive selection ensures that all TCR bearing cells can interact with self MHC I (CD8+) or MHCII (CD4+)

Selection takes place on thymic cortical epithelial cells

MUTATIONS L4 S12

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8
Q

negative selection

A

Negative selection takes place in the thymic cortex and medulla.

  • Driven by APC’s.
  • T cells with TCRs which react strongly with ubiquitous self antigens are deleted in the thymus- preventing autoimmunity
  • T cells with TCRs which interact too strongly with self MHC are deleted- preventing inappropriate activation
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9
Q

The major T cell effector subclasses and their functions in cell mediated and humoral adaptive responses

A
CD8 cytotixic T cells
CD4 Th1 cells
CD4 Th2 cells
CD4 Th17 cells
Tfh cells
CD4 regulatory T cells (many typs)
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10
Q

naive T cells recirculate through secondary lymphoid organs

A

Naïve T cells encounter antigen during their recirculation through secondary lymphoid organs

T-cells will be effectively sampling the AG on offer.

If they recognise it they stay, proliferate and differentiate.

If not they carry on their way.

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11
Q

How do T cells get into lymph node?

A

ROLLING - selections like L-selectin
ACTIVATION - chemokines like CCL21
ADHESION - integrins like LFA-1
DIAPEDESIS - chemokines like CCL21 and CXL12

Entrance from the blood to the lymph nodes occurs through the high endothelial veinules.

It is regulated by adhesion molecules, chemokines and chemokine receptors

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12
Q

binding to selectins to vascular addressins

A

DIAGRAM IN L4 S20
L- selectin recognises carbohydrate motifs and is expressed on all T cells.

Addressins on epithelial surfaces bind L-selectin and bind T cells weakly to the endothelial surface

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13
Q

binding of integrins to adhesion molecules

A

DIAGRAM IN L4 S21
Integrins bind to adhesion molecules that are important immunoglobulin superfamily members.

These stabilise binding to APCs, HEV or endothelia

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14
Q

how do Lymphocytes enter the lymph nodes

A

Lymphocytes enter the lymph nodes by crossing the walls of the high endothelial veinules
DIAGRAM IN L4 S22

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15
Q

role of dendritic cells

A

Dendritic cells process antigen to present to T cells from a wide variety of pathogens

routes of antigen processsing and presentation by dendritic cells
DIAGRAMS L4 S23

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16
Q

Cell adhesion molecules are essential in the interactions between APCs and naïve lymphocytes

A

L-selectin is an adhesion molecule it binds to carbohydrates, here is the naïve T cell and here is the L-selectin molecule and it binds to these addressin molecules CD34 and GlyCAM-1 bound to the endothelial cell and just slows down the movement enough to stop the cell from rolling past and to start to be adhered to the wall. Slightly different addressins involved in mucosal endothelium but they do the same thing, they bind to the L-selectins and slow down the naïve T cell so that they can enter into the lymph node.

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17
Q

how do transient adhesive interactions between T cells and APCs stabilised

A

Transient adhesive interactions between T cells and APCs are stabilised by specific antigen recognition

DIAGRAM L4 S25

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18
Q

Naïve T cells need 3 signals to become activated

A

Signal 1- a specific interaction between the TCR and MHC + antigenic peptide

Signal 2- a co-stimulatory interaction which provides a survival and proliferation signal

Signal 3- a differentiation signal provided by a secreted cytokine

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19
Q

costimulatory signal provided by CD28:B7 binding

A

The costimulatory signal provided by CD28:B7 binding stimulates the production of a high affinity IL2 receptor on activated T-cells
DIAGRAM L4 S27

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20
Q

Variation in signal 3

A

Variation in signal 3 results in naïve CD4+ T cells acquiring different effector function
DIAGRAMS IN L4 S28

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21
Q

Different subsets of T cells roles

also role of adhesion molecules?

A

Different subsets of T cells are specialised to provide help for different classes of pathogens

TH1 cells
TH2 cells
TH17 cells
TFH cells
Treg cells
CD8 cyt T cells
CD4 TH1 cells
CD4 TH2 cells
CD4 TH17 cells

also remember that adhesion molecules are essential not just for the crossing of the T cells into the lymph nodes but also important in the interaction of APCs and this just shows you some of the major interactions that take place between the adhesion molecules found on the T cell and in the APC.

22
Q

Partial signalling results in functional inactivation or anergy

A

co-stimulatory signal alone
antigen specific signal alone

DIAGRAM IN L4 S31

23
Q

Most CD8+ T cell require T cell help

A

Interaction between a CD4+ T cell and an APC activates the T cell to produce CD40 Ligand and IL-2.

CD40L binds to CD40 on the APC providing an additional signal so that the APC increases the level of B7 and produces 4-IBBL.

4-IBBL bindings to 4-IBB on the CD8+ T cell and B7 binding to CD28 provide co-stimulatory signals to the T cell and the further production of IL-2.

IL-2 acts as a growth factor to promote CD8+ T cell differentiation.

24
Q

effector t cells produced

A

Once an effector T cell is produced it is able to carry out its function in the absence of further co-stimulation

stimulation fo naive t cell
proloferating t cells
active effector t cells kill virus infected target cells

25
Q

where do B cells derive from

A

As for the T cell, all B cells derive from a hematopoietic stem cell in the bone marrow

B cells are released from the stromal cells in the bone marrow, into the circulation where they make their way to peripheral (secondary) lymphoid organs (Panel 3.) The B cell is able to interact with AG as a naïve cell and it can only interact with and bind with it’s cognate AG i.e. the AG that will be complementary to it’s BCR. If there is interaction with AG, the cell is activated and able to differentiate into plasma (antibody secreting) cells.

DIAGRAM L5 S2

26
Q

The main phases in the life cycle of a B cell

A

4 stages

DIAGRAM IN L5 S3

27
Q

early phases of B cell development

A

The early phases of B cell development are dependent on the stromal cells in the bone marrow

  • Interaction of the tyrosine kinase receptor FLT3 with its ligand is essential to make the common lymphoid progenitor
  • IL-7 produced by the stromal cells act through the IL-7R
  • Adhesion molecules retain the B cell on the stromal cells
  • This adhesion allows the tyrosine kinase receptor Kit to bind its ligand stem cell factor, SCF, activating the kinase and driving the cells into cell division
28
Q

phases of B cell development

A

The stages of B cell development are defined by Immunoglobulin gene rearrangement and expression

Large pre-B cells are dividing cells which express surrogate light chain and the pre-B receptor
When these cells cease dividing into many small pre-B cells and start to rearrange their light chain genes.

29
Q

rearranged immunoglobulin gene

A

A productively rearranged immunoglobulin gene is immediately expressed

early pro-B cell (Vh-DJh rearrangements occur)
large pre-B cell (stop heavy-chain gene rearrangement, progression to light chain gene rearrangement)
immature B cell (stop light chain gene rearrangment)
mature B cell

DIAGRAM L5 S6

30
Q

surrogate light chains VpreB and λ5

A

The surrogate light chains VpreB and λ5 bind the heavy chain allowing surface expression.

Signalling through cross linked receptors via Igα and Igβ prevents further heavy chain gene rearrangement
Allelic exclusion.

31
Q

Binding to self molecules in the bone marrow

A

Binding to self molecules in the bone marrow can lead to death or functional anergy

  • no self reaction –> migrates to periphery –> mature B cell
  • multivalent self molecule –> clonal deletion or receptor editing –> apoptosis or generation of non-autoreactive mature B cell
  • soluble self molecule –> migrates to periphery –> anergic B cell (rapidly lost)
  • low affinity non cross linking self molecule –> migrates to periphery –> mature B cell (clonally ignorant and can be potentially self reactive)
32
Q

what is the humoral response mediated by?

A

The humoral response is mediated by antibodies secreted by plasma cells

DIAGRAM L5 S11

33
Q

when is the humoral response initiated

A

The humoral response is initiated when B cells that bind antigen are signalled by helper T cells or by certain microbial antigens alone

  • Two signals are necessary to activate the B cell in both thymus dependent and thymus independent activation
  • The first signal is delivered when the immunoglobulin on the surface of the B cell binds its antigen
  • The second signal is delivered by a helper T cell recognising degraded fragments of the same antigen in the context of MHC II and involves essential interaction between CD40 and CD40L and the release of cytokines
34
Q

multiple cytokine release

A

Multiple cytokine release drives the proliferation and differentiation of the B cells into the effector plasma cells and memory B cells

  • antigen recognition induces expression of effector molecules by the T cell, which activates the B cell
  • B cell proliferation
  • differentiation to resting memory cells and antibody secreting plasma cells
35
Q

The release of cytokines from the helper T cell

A

The release of cytokines from the helper T cell occurs in a polarised manner

  • helper t cell adheres to the B cell and begins to synthesise IL4 and CD40 ligand
  • the helper t cell reorients its cytoskeleton and secretory apparatus towards the B cell
  • IL4 is released and is confined to the space between the B cell and the T cell
36
Q

naive B cells in the lymph node

AND lymph node structure

A

naive B cells travel to the lymph node via the bloodstream and leave via the efferent lymph

DIAGRAM OF STRUCTURE IN L5 S15

37
Q

B cells that encounter antigen in the follicle

A

B cells that encounter antigen in the follicle will form a primary focus
some proliferating B cells migrate into the follicle to form a germinal center

38
Q

what goes on in a germinal centre?

A

Germinal centres are active sites of B-cell proliferation

They mainly consist of B cells but also have 10% antigen specific T cells which continue to help the differentiating B cells (also follicular dendritic cells)

Unstimulated B cells form a mantle zone of resting B cells around the edge of the germinal centre

B cells undergo affinity maturation and somatic hypermutation in the germinal centres, refining the affinity of the receptor. They can also class switch under the influence of cytokines

The B cells will differentiate into either memory cells or plasma effector cells which are then released from the lymph node

39
Q

The structure of a germinal centre

A

Centroblasts undergo somatic hypermutation in the dark zone.

They are then tested for antigen binding ability by cycling into the light zone where they contact follicular dendritic cells bearing antigen.

Centrocytes carry the chemokine receptor CXCR5 but not CXCR4.

The Gain and loss of CXCR4 allows cells to re-enter the dark zone by attraction to CXCL12

So B cells can undergo multiple rounds of mutation and selection

DIAGRAM OF FOLLICLE WITH A GERMINAL CENTER IN L5 S18-19

40
Q

Germinal centre survival depends on?

A

Germinal centre survival depends on B cell contact with antigen

The source of Antigen is probably in the form of immune complexes on follicular dendritic cells.

Interaction with these and signalling through CD40 provided by T-FH sustains germinal centre B-cell proliferation.

41
Q

plasma cells leave the lymph node via?

A

plasma cells migrate to the medullary cords or leave via the efferent lymphatics
plasma cells migrate to the bone marrow

42
Q

Different classes of immunoglobulins and their different functions

A
FUNCTIONS:
neutralization
opsonization
sensitization for killing by NK cells
sensitization of mast cells
activates complement system
DISTRIBUTION:
transport across epithelium
transport across placenta
diffusion into extravascular sites
mean serum level (mgml-1)
43
Q

cytokines direct class switching

A

role of cytokines in regulating expression of antibody classes
cytokines: IL4, IL5, IFNℽ, TGFB

44
Q

Neutralisation of harmful bacterial toxins by?

A

Neutralisation of harmful bacterial toxins by high affinity antibody

  • toxin binds to cellular receptors
  • endocytosis of toxin:receptor complexes
  • dissociation of toxin to release active chain, which poisons cell
  • antibody protects cell by blocking binding of toxin
45
Q

Virus entry into cells can also be blocked by?

A

Virus entry into cells can also be blocked by neutralising antibodies

  • virus binds to receptors on cell surface
  • receptor mediated endocytosis of virus
  • acidification of endosome after endocytosis triggers fusion of virus with cell and entry of viral dna
  • antibody blocks binding to virus receptor and can also block fusion event
46
Q

Activation of the classical complement pathway by ?

A

Activation of the classical complement pathway by antibody bound to the pathogen surface

  • pentameric IgM molecules bind to antigens on the bacterial surface and adopt the staple form
  • C1q binds to one bound IgM molecule
  • binding of C1q to Ig activates C1r, which cleaves and activates the serine protease C1s
    OR
  • IgG molecules bind to antigens on the bacterial surface
  • C1q binds to at least 2 IgG molecules
  • binding of C1q to Ig activates C1r, which cleaves and activates the serine protease C1s
47
Q

Complement receptors are important why?

A

Complement receptors are important in the removal of immune complexes

  • small antigen:antibody complexes form in the circulation
  • activation of complement leads to the deposition of many molecules of C3b on the immune complex
  • complement receptor CR1 on erythrocytes binds the immune complexes via bound C3b
  • in the spleen and liver, phagocytotic cells remove the immune complexes from the erythrocytes surface
48
Q

The Fc receptors form a complex family

A

The Fc receptors form a complex family often with restricted tissue distribution which aid the destruction of antibody coated pathogens

49
Q

Fc receptors and complement receptors on phagocytes trigger what?

A

Fc receptors and complement receptors on phagocytes trigger phagocytosis

  • bacterium is coated with complement and IgG antibody
  • when C3b binds to CR1 and antibody binds to Fc receptor, bacteria are phagocytosed
  • macrophage membranes fuse, creating a membrane-enclosed vesicle, the pahgosome
  • lysosomes fuse with these vesicles, delivering enzymes that degrade the bacteria
50
Q

Antibody coated target cells are killed by ? in ?

A

Antibody coated target cells are killed by NK cells in Antibody Dependent Cellular Cytotoxicity

OPSONISATION

  • antibody binds antigens on the surface of target cells
  • Fc receptors on NK cells recognise bound antibody
  • cross linking of Fc receptors signals the NK cell to kill the target cell
  • target cell dies by apoptosis
51
Q

Cross-linking of IgE on the surface of mast cells results in?

A

Cross-linking of IgE on the surface of mast cells results in the degranulation of mast cells and the release of inflammatory mediators

resting mast cells contain granules containing hhistamine and other inflammatory mediators
activates mast cell have multivalent antigen cross-links bound IgE antibody, causing release of granule contents