Lecture 3: Drug repurposing and vaccine development Flashcards

1
Q

Vaccine definition

A

A preparation that is used to stimulate the body’s immune response against diseases.

Vaccines are usually administered through injections, but some can be administered by mouth or sprayed into the nose.

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2
Q

Vaccination

A

The act of introducing a vaccine into the body to produce protection to a specific disease.

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3
Q

Prophylactic Vaccines

A

Induce an immune response that protects against subsequent infection or disease.

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4
Q

Therapeutic Vaccines

A

Induce or augment immune responses involved in the control of virus replication. Prevent disease recurrence.

Treat existing cancers by stimulating the body’s natural immune defences.

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5
Q

BENEFITS OF VACCINATION

A

Disease Control

Mitigation of disease severity

Prevention in unvaccinated populations

Protection against related diseases and cancer

Societal and other benefits

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6
Q

Immunology 101

A
  • First line of defence – Innate Immunity
  • Second line of defence – Acquired Immunity
  • Two different types of immunity important for acquired immunity.
  • antibody-mediated immunity (humoral immunity)
  • cell-mediated immunity
  • Vaccines stimulate the body’s own immune system to protect the person against subsequent infection or disease.
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7
Q

Main Vaccine Technologies

A

Inactivated vaccines
* Live Attenuated vaccine
* Subunit vaccines
* Toxoid vaccines
* Viral vectored vaccines
* mRNA vaccines

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8
Q

Inactivated Vaccines

A
  • Killed virus particles (e.g. heat, formaldehyde, radiation)
  • Inactivated vaccines generally induce the weakest immune responses and recipients often require a “booster” vaccination.
  • Generally, the immune response dominated by neutralising antibodies.
  • Killed vaccines are considered safe - cannot replicate and cause disease.
  • Typhoid vaccine, Salk poliomyelitis vaccine.
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9
Q

Live Attenuated Vaccines

A

a type of vaccine that uses a weakened (or “attenuated”) form of the germ that causes a disease (e.g. cold adapted)

The vaccine contains live germs, but these germs have been weakened so they can’t cause serious illness.
Because the germs are alive but weakened, they mimic a natural infection very closely. This helps the immune system learn to fight the actual disease effectively.

These vaccines tend to create a strong and long-lasting immune response, often with just one or two doses.

  • Often the most successful vaccines
  • Organism can still multiply and appear like a genuine infection.
  • Both antibody-mediated and cell-mediated immunity.
  • Immunity produced is often lifelong
  • Carry the greatest risk – reversion to virulence, not for the immunocompromised.
  • Measles, mumps, and rubella.
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10
Q

Subunit Vaccines

A
  • Use parts of an organism (antigens) that are known to stimulate the immune system.
  • Protein antigen can be produced in large quantities in cell culture.
  • Antibody-mediated immune response
  • Subunit vaccines cannot revert to a virulent form – good for oncogenic or persistent viruses
  • Example: Hepatitis B vaccine, COVID-19 vaccine (Nuvaxovid, Novavax), RSV (Arexvy, GSK)
  • Can self-assembled in ‘virus-like particles’ which have the structure and antigenic characteristics of virions, but with no genome (HPV vaccine; Gardasil)
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11
Q

Toxoid Vaccines

A
  • A toxin from certain bacteria that has been made harmless but that elicits an immune response against the toxin.
  • Generally induce a weaker immune response requiring a booster and adjuvants
  • Cannot cause disease.
  • Example: tetanus or diphtheria.
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12
Q

Viral Vectored Vaccines

A

a type of vaccine that uses a different, harmless virus to deliver important instructions to your cells.
This harmless virus carries genetic material from the germ that causes the disease. This genetic material gives your cells the instructions to make a part of the germ called an “antigen.”
Your immune system recognizes this antigen and learns how to fight the actual germ.
E.g. Ervebo Ebola vaccine, AstraZeneca COVID-19 vaccine

  • In-vivo production of antigen = correct folding, posttranslational modifications etc
  • Can be grown to high titres in many mammalian and insect cell lines.
  • Induce neutralizing antibody responses.
  • Induce cell mediated immunity
  • Ideally…
  • Low risk of pre-existing immunity
  • Low anti-vector response
  • Lack of a DNA intermediate during viral replication (doesn’t risk insertional mutagenesis)
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13
Q

COVID-19 Vaccine (AstraZeneca)

A
  • Chimpanzee adenoviral vector (ChAdOx1) – avoids pre-existing immunity to human Adv vectors (common cold)
  • Replication deficient viral vector
  • Delivering codon‐optimised DNA sequence of SARSCoV-2 spike protein.
  • Spike proteins is properly produced, folded and presented to the immune system via cell surface MHC
  • Stimulated neutralising antibody and cellular immune responses
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14
Q

Ervebo Ebola vaccine (Merck Sharp & Dohme Corp.)

A
  • Replication-competent, live attenuated (weakened) recombinant vesicular stomatitis virus (rVSV) vaccine.
  • Non-segmented, negative-stranded RNA vector with VSV glycoprotein (GP) gene replaced by Ebola GP gene.
  • Vector delivers the antigen gene of interest inside the target host cell for protein production and presentation
    (on MHC) by the cell.
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15
Q

mRNA Vaccines

A

A type of vaccine that uses a small piece of the messenger RNA (mRNA) from the germ that causes the disease. This mRNA gives your cells the instructions to make a protein that triggers an immune response.

  • mRNA vaccines are relatively easy and quick to design
  • mRNA vaccines cannot revert to a virulent form.
  • mRNA is processed in the cytosol not the nucleus and cannot be integrated into the host genome (no risk of insertional mutagenesis)
  • Produces properly folded spike protein for presentation to the immune system on cell surface MHC proteins.
  • Storage and transportation issues at various levels of complexity
  • Pfizer vaccine: -70 degree storage, once thawed can be kept refrigerated for 5 days
  • Moderna vaccine: -20 degree storage, once thawed can be kept refrigerated for 60 days.
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16
Q

WHY DO WE NEED NEW VACCINES AND VACCINE TECHNOLOGIES?

A

Vaccines are not available for many diseases of public health importance
a. Existing diseases (HIV, HCV, HSV etc)
b. Emerging diseases and pandemics (new, increased range and cases e.g. West Nile virus (1999), SARS (2003), Chikungunya (2005), swine flu (2009), MERS (2012), Ebola (2014), Zika
(2015), YF (2017), COVID-19 (2020), ??

Current vaccines may be suboptimal
a. Manufacturing issues (e.g. some influenza vaccines)
b. Cold-chain distribution challenges (e.g. live vaccines in developing countries, some mRNA vaccines etc)
c. Immunization schedules that are not ideal (e.g. multiple boosters reduce compliance)
d. Suboptimal protection
* Control of pertussis is problematic because immunity, (from immunisation or infection), wanes after ~6–10 years.

17
Q

5 CHALLENGES OF VACCINE
DEVELOPMENT

A
  • IMMUNOGENICITY / EFFICACY
  • immune correlates to protection
  • it has to actually work ahah
  • SAFETY
  • vaccines must be safe to administer to patients and so must follow strict toxicity testing etc. which could be challenging to pass
  • REGULATORY HURDLES
  • to ensure they’re safe to give to public, they must pass strict + strenuous regulatory requirements at every step from origin + testing of the cells to final product
  • MANUFACTURING ISSUES
  • translating bench scale production procedure to a cGMP process
  • RAPID RESPONSE TO EMERGING
    THREATS
  • not rlly an answer?
18
Q

Cell cultures for:
Hep A
Hep B
Influenza
Polio

A

Hep A: Hepatitis A propagated in MRC-5
human diploid cells

Hep B: Recombinant hepatitis B surface antigen (HBsAg) produced in yeast cells

Influenza: Propagation on embryonated chicken eggs

Polio: Types 1, 2, and 3 poliovirus individually grown in Vero cells on
microcarriers using Eagle MEM modified medium

19
Q

DRUG DEVELOPMENT CHALLENGES (5)

A

High risk
- Of 5,000 - 10,000 compounds discovered only 1 will become an FDA approved drug

High cost
- estimated average pre-tax cost per new prescription drug approval: $985 million - $2,558 million

Time intensive
- Synthesis to New Drug Application (NDA) approval (mean time in the US): ~12 -15 years

Highly regulated
- Strict regulations on testing and manufacturing standards imposed by health authorities

Highly competitive
- Rapidly changing healthcare environment

20
Q

Impact of drug development challenges

A
  • Fewer (Blockbuster) Product approvals
  • Drying product pipelines
  • Need to maximise returns from pipeline revenues from existing products.
  • Partnerships, mergers and acquisitions, consolidation, diversification, licensing agreements
    and downsizing
21
Q

WHAT IS DRUG REPURPOSING?

A

Application of existing drugs or discontinued candidate compounds to new indications

22
Q

Two Major Approaches of Drug Repurposing

A
  1. Known molecule acting via a new target/mechanism for a new indication (‘Off Target’ or ‘Drug Centric’)
  2. Known molecule acting via a known target/mechanism for a new indication (‘On Target’ or ‘Disease or Target Centric’)
23
Q

KNOWN COMPOUND NEW TARGET

A
  • A drug/compound can interact with
    multiple targets (receptors, ion channels, enzymes etc.)
  • Exploits “off-target” drug
    interactions
  • Conventionally drug activity at other targets is considered undesirable (non-selective, potential side effects etc.)
24
Q

KNOWN TARGET NEW INDICATION

A
  • A drug/compound interacts with a
    target (receptor, ion channel, enzyme etc.) or pathway which may be applicable to another indication
  • Complex disorders can share the
    same pathological processes e.g. inflammation, angiogenesis, fibrosis,
    cellular proliferation etc.
  • Traditionally ~80% of drug repurposing has occurred through
    this route
25
Q

BENEFITS OF DRUG REPURPOSING

A
  1. Lower Risk
  2. Shorter time to market
  3. Lower cost of development
26
Q

CHALLENGES FOR DRUG REPURPOSING

A
  1. Intellectual Property issues
    - patent owners of the original drug might have anticipated drug repurposing in their patent and hence own new drug too
  2. Data Issues
    - previous studies done might no longer meet current regulatory requirements
27
Q

what is PRODUCT LIFE CYCLE MANAGEMENT

A
  • approach to managing a products journey
  • involves overseeing every stage of products life + development
  • aims to maximise market performance, optimise costs and ensure compliance with regulations
28
Q

Major goals of Product Life Cycle Management

A
  • Extend the period without generic competition
  • Increase the market size
29
Q

Examples of drug life cycle management strategies

A
  • New formulations/delivery systems
  • New dosing strengths/regimens
  • Broader patient populations
  • Pediatric indications
  • Combination therapies
  • Drug repurposing
30
Q

REPURPOSING STRATEGIES

A
  1. Drug-oriented methodology
    - structural characteristics of the drug, its biological activities, adverse effects and toxicities are evaluated
  2. Target-based methodology
    - in silico testing followed by in vitro testing
  3. Disease/therapy-oriented methodology
    - ?
31
Q

EXAMPLES OF REPURPOSED DRUGS

A

Sildenafil
(Viagra)

  • Developed as an anti-angina medication
  • Exploit side effect of treating erectile dysfunction

Thalidomide
- OTC morning sickness treatment resulting in severe birth defects
- Now treats leprosy and multiple myeloma.

32
Q

HUMAN-ANIMAL REPURPOSING

A

Trazodone
- Used for depression and anxiety in humans
- Prescribed for canine anxiety

33
Q

Viagra Sildenafil case study

A

‘On Target’ Repurposing

PDE2 enzyme = target for angina (breaks down cGMP which causes smooth muscle relaxation and artery
dilatation)

Sildenafil inhibits PDE2 enzyme

34
Q

describe 6 vaccines technologies

A

Inactivated Vaccines
- consists of killed virus particles
- often requires boosters
Live Attenuated Vaccines
- uses a weakened form of the virus
- vaccines create a strong + long-lasting immune response with one or two doses

Subunit Vaccines
- uses antigens (small parts) of an organism that are known to stimulate the immune system
- cannot revert to virulent form

Toxoid Vaccines
- consists of a toxin from a particular bacteria that has been made harmless but elicits an immune response against the toxin
- cannot cause disease
- generally a weaker immune response requiring boosters

Viral Vectored Vaccines
- vaccine uses a harmless virus as a vector to deliver important instructions to help your body learn how to recognise + fight the germ that causes the disease
- can be grown to high titres

mRNA Vaccines
- uses a small piece of mRNA from pathogen that causes the disease
- cells use instructions to make antibodies
- cannot revert to virulent form

35
Q
A