Lecture 3. Anaerobiosis Flashcards
What does Clostridium mean?
Bunch of organisms that can be pathogenic or non-pathogenic
Why is oxygen important?
Oxygen is a universal component of cells and is always provided in large amounts by H₂O. However, prokaryotes display a wide range of responses to molecular oxygen O₂
What are obligate aerobes?
Require O₂ for growth; they use O₂ as a final electron acceptor in aerobic respiration
What are obligate anaerobes (occasionally called aerophobes)?
Do not need or use O₂ as a nutrient. In fact, O₂ is a toxic substance, which either kills or inhibits their growth. Obligately anaerobic prokaryotes may live by fermentation, anaerobic respiration, bacterial photosynthesis, or the process of methanogenesis
What are facultative anaerobes (or facultative aerobes)?
Organisms that can switch between aerobic and anaerobic types of metabolism. Under anaerobic conditions (no O₂) they grow by fermentation or anaerobic respiration, but in the presence of O₂ they switch to aerobic respiration
What are aerotolerant anaerobes?
Bacteria with an exclusively anaerobic (fermentative) type of metabolism but they are insensitive to the presence of O₂. They live by fermentation alone whether or not O₂ is present in their environment.
What are microaerophiles?
Grow in aerobic conditions, but only when O₂ levels are low (below 0.2 atm)
What determines an organisms response to oxygen in its environment?
Depends upon the occurrence and distribution of various enzymes which react with O₂ and various oxygen radicals that are invariably generated by cells in the presence of O₂
What do all cells contain?
All cells contain enzymes capable of reacting with O₂ e.g. oxidation of flavoproteins by O₂ invariably results in the formation of H₂O₂ (peroxide) as one major product and small quantities of an even more toxic free radical, superoxide or O₂⁻
When do chlorophyll and other pigments in cells react with O₂ and what does this generate?
In the presence of light
Generates a singlet oxygen, another radical form of oxygen which is a potent oxidising agent in biological systems
What prevents lethal accumulation of superoxide within aerobes and anaerobes?
The enzyme superoxide dismutase
What enzyme do nearly all organisms contain and what is this enzyme’s function?
Catalase. decomposes peroxide
How do certain aerotolerant bacteria (such as the lactic acid bacteria that do not possess catalase) decompose peroxide?
By means of peroxidase enzymes which derive electrons from NADH₂ to reduce peroxide to H₂O
Because obligate anaerobes lack superoxide dismutase, catalase and/or peroxidase, what do obligate anaerobes undergo?
Lethal oxidations by various oxygen radicals when they are exposed to O₂
What are carotenoid pigments?
Found in all photosynthetic (and some non-photosynthetic) organisms
Protect organisms from lethal oxidations of singlet oxygen through a physical reaction that lowers the singlet oxygen radical to its non-toxic “ground” (triplet) state
Carotenoids are said to “quench” singlet oxygen radicals
What is the chemical equation of superoxide dismutase activity?
[O₂⁻] + [O₂⁻] + 2H⁺ → O₂ + H₂O₂
What is the chemical equation of catalase activity?
O₂ + H₂O₂ → 2H₂O + O₂
What is the chemical equation of peroxidase activity?
O₂ + H₂O₂ → 2H₂O
NADH + H⁺ → NAD⁺
What do most Clostridia lack?
Respiratory chain cytochromes, catalase, peroxidases and superoxide dismutase
How do Clostridia obtain ATP?
Only by substrate-level phosphorylation (in which high energy phosphate bonds from organic intermediates are transferred to ADP)
What do a number of clostridia ferment?
Ferment sugars, producing butyric acid (and also acetone and butanol)
Others ferment amino acids