Lecture 2B Flashcards

1
Q

What is free energy (G) in bioenergetics?

A

Energy available to do work in a system.

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2
Q

What does a negative ΔG° indicate?

A

An exergonic reaction that releases free energy.

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3
Q

What does a positive ΔG° indicate?

A

An endergonic reaction that requires energy input.

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4
Q

What are standard conditions for ΔG°′?

A

pH 7, 25°C, 1 ATM, 1M reactants/products

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5
Q

How does ΔG° differ from ΔG?

A

ΔG° is standard, ΔG is actual cellular condition

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6
Q

What is the Gf° of elemental substances?

A

Zero.

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7
Q

What does negative Gf° signify?

A

Exergonic formation.

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8
Q

What does positive Gf° signify?

A

Endergonic formation.

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9
Q

What is activation energy?

A

Minimum energy needed to start a reaction.

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10
Q

How do enzymes affect activation energy?

A

They lower the activation energy needed.

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11
Q

What does lysozyme do?

A

Breaks β(1→4) bonds in peptidoglycan.

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12
Q

List the steps of lysozyme catalysis.

A

Substrate binding, complex formation, bond strain, cleavage, product release

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13
Q

What is an electron donor?

A

A substance that loses electrons (oxidized).

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14
Q

What is an electron acceptor?

A

A substance that gains electrons (reduced).

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15
Q

What does a more negative E₀′ mean?

A

Better electron donor.

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16
Q

What does a more positive E₀′ mean?

A

Better electron acceptor.

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17
Q

What is NADH’s redox potential?

A

−0.32 V.

18
Q

Is NADH a donor or acceptor?

A

Electron donor.

19
Q

Is NAD+ a donor or acceptor?

A

Electron acceptor.

20
Q

Name four energy-rich molecules.

A

PEP, Acetyl-CoA, Acetyl phosphate, Glucose 6-phosphate

21
Q

How much energy does ATP hydrolysis release?

A

-31.8 kJ/mol.

22
Q

Where are all proteins synthesized?

A

In the cytoplasm.

23
Q

What targets proteins for membranes?

A

N-terminal hydrophobic signal sequences.

24
Q

What do trigger factors do?

A

Bind nascent proteins and direct secretion.

25
What does the SRP do?
Guides membrane proteins to FtsY receptor.
26
What does FtsY do?
Delivers SRP-bound proteins to SecYE or membrane.
27
What does SecYE translocon do?
Inserts proteins or translocates to periplasm.
28
What is SecB?
A chaperone for guiding unfolded proteins to SecA.
29
What is the function of SecA?
Uses ATP to insert preprotein into SecYE.
30
What powers final translocation?
Proton motive force.
31
What cleaves signal peptides?
LepB signal peptidase.
32
What is unique about TAT pathway?
Transports folded proteins; Sec-independent.
33
Name outer membrane proteins in bacteria.
OmpA, OmpC, OmpF
34
What are Bayer junctions?
Adhesion zones between inner and outer membranes.
35
What is Type I secretion?
ABC transporter system for one-step export.
36
What are components of Type I secretion?
TolC (outer), HlyB (ABC), HlyD (periplasmic)
37
What powers Type I secretion?
ATP hydrolysis.
38
What is Type II secretion?
Sec-dependent system for folded proteins.
39
What is Type III secretion?
Injects toxins directly into host cells.
40
What is Type IV secretion?
Conjugation-like system for protein or DNA transfer.
41
What is Type V secretion?
Uses β-barrel autotransporters for secretion.