Lecture 23 Flashcards

1
Q

Multicellular organisms:

A
  • Only certain cells contribute to the germ line in multicellular organisms
  • To generate a fully transgenic organism carrying the introduced DNA in every cell, you need a means to alter the germ line
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2
Q

Plant transformation:

A
  • Electroporation of plants cell protoplasts
  • Biolistics ‘gene gun’ and tungsten beads
  • Agrobacterium mediated transformation, using a Ti (tumor inducing) plasmid from agro, to promote integration of DNA
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3
Q

Agrobacterium mediated transformation of plant cells:

A
  • Ti plasmids of agrobacterium inserted into plant cells. Ti plasmids get transferred into the plant
  • Crown gall disease develops (over growth of cells), blocking xylem and phloem
  • Agro transfers part of it’s DNA into the plant DNA
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4
Q

Ti plasmid (unengineered):

A
  • It’s own oriV
  • Virulence genes (encode proteins required for infection, T-DNA transfer and integration into host genome)
  • T-DNA genes (encode proteins required for gall formation, this material is inserted into the plant genome)
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5
Q

Ti plasmid vector:

A
  • Insert/replace T-DNA with the gene of interest and selectable marker flanked by T-DNA borders
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6
Q

Binary plasmid vectors:

A
  • Create two separate plasmids
  • One has virulence genes, for infection and mobilisation
  • The other has the genes of interest flanked by the T-DNA boarders, critical for mobilisation
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7
Q

Infecting the plant with Agrobacterium carrying the T-RNA construct

A
  • Infect callus tissue which is totipotent
  • Floral dip method, just dip/paint the base of the stem
  • Genes will be inserted
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8
Q

Which cells will take up the T-DNA plasmid?

A
  • Random!
  • Look for tissue developing into seeds (germ line), not vegetative
  • Screen collected seeds for those that have taken up the selectable marker (drug resistance etc)
  • 1/1000 seeds will contain T-DNA, which seems low but is actually quite feasible
  • This will create heterozygous plants, which can be crossed to create homozygotes
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9
Q

Plant transformation:

A
  • Integration via T-DNA flanks, not homology, so is non-homologous
  • Used to confirm gene identify, probably not for cloning genes by complementation
  • Introduce reporter constructs, such as GUS or lacZ
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10
Q

Drosphila melanogaster transformation:

A
  • To introduce DNA into the embryo micro-inject DNA into the posterior pole (which is the site of gonad development)
  • This will only work if a P-element vector is used, as dros are very resistant to introduction of DNA
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11
Q

Hybrid dysgenesis:

A
  • Occurs wen certain combinations of strains are cross
  • P strains contain a resident transposable elements, called the P element, M strains lack this element
  • When P males are crossed to M females, the P elements in the male genome are mobilised and reduced fertility and elevated rates of mutations occurs
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12
Q

P-elements:

A
  • Encode a transposase that can result in excision of the resident P-elements and re-insertion into random sites within the Drosophila genome
  • The transposase contains inverted repeats which allow mobilisation
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13
Q

Dros transformation using P-elements:

A
  • Inject DNA into M (w- or rosy-) embryo with no P-elements present
  • The DNA will have the genes of interest, a selectable marker, flanked by inverted repeats.
  • On a second plasmid insert a transposase with no inverted repeats
  • This mobilises the DNA between the inverted repeats
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14
Q

Creating homozygous drosophila:

A
  • DNA integration is via repeats and transposase
  • This is non-homologous
  • Only some cells will have taken up the DNA: mosaics
  • Cross the mosaics and look for selectable marker phenotype (often white)
  • Cross mosaics with white eyes, produces heterozygotes
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15
Q

Gene transfer in drosophila:

A
  • Requires P-element vector, inject dNA into M-type embryo and take moaics to produce G1 then G2
  • Low numbers
  • DNA will be integrated non-homologously
  • Used to introduce cloned genes to confirm and assess the effect of a mutation on gene function in vivo and monitor reporter gene expression
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16
Q

Enhancer trap:

A
  • Uses non-homologous integration to identify new genes of interest
  • Reporter gene (lacZ) is fused to a minimal promoter with no regulation and flanked by inverted repeats, and introduced to the organism
  • Dros transformants are screened for regulated expression of lacZ
  • If it is integrate near the gene of interest the insertion provides a tag for cloning!
17
Q

Gene targeting in dros:

A
  • Non-random, non-homolgous
  • DNA introduced by the P-elements, so integrates randomly
  • FLP/FRT recombinase generates plasmid in vivo
  • Plasmid is cut by rare RE to increase the frequency of homologous events
  • Induce FLIP recombinase, and recombination between FRT sequences generates a plasmid
  • Plasmid cut by RE inside the nucleus
  • Homologous recombination occurs
  • Could be applied to any gene, but is tooooo hard!
18
Q

RNAi for targeted inactivation of gene function:

A
  • used to knock down gene expression
  • Injection do dsRNA, specific ablation of corresponding endogenous mRNA
  • So can use this biological system to bring about RNAi type inactivation of gene function in the organism
  • Create constructs expression siRNA in vivo, containing promoter, sense and antisense version of gene of interest
  • Generate dsRNA inside the cell, DICER will chop it up, and RNAi will start
19
Q

attP/attB:

A
  • Targeting incoming DNA to known locations, the attP/attB sites
20
Q

dsRNA expression can be controlled:

A
  • Inducible at the tissue or stage specific mRNA level
  • A promoter only active at a certain tissue or stage of development
  • Allows specific knock down of the gene of interest
21
Q

To clone a gene by complementation:

A
  • We need to know if the mutation is recessive or dominant
  • This is because we need to know if it is cloning by complementation
  • Detecting WT version of gene is to see a restoration of the WT copy
  • If the mutant was a dominant, you would no see rescue, so you would not be able to pick up complimentation