Lecture 21 - Tregs (pt. 2) Flashcards
what is the Treg proteome?
mRNA that actually gets transcribed
what 2 general signals influence the Treg proteome?
- Foxp3 signaling
- Non-transcriptional signals
how does Foxp3 signaling affect the Treg proteome?
induce suppressive function and block inflammatory genes as part of the Treg transcriptional program
3 examples of non-transcriptional signals that affect Treg proteome
- extracellular signals
- miRNA
- Protein modification
why is it important to look at Treg proteome?
anything can be transcribed, but whether or not it is translated will actually affect the function
why are extracellular signals important for Tregs?
lets them adapt and evolve their function based on level of in situ inflammation
describe what was found in general with polyribosomal profiling
found some mRNAs have more ribosomes associated, other mRNAs have no ribosomes
there are genes for specific functions where mRNAs are translated differently in different cell types
3 pathways of genes expressed more in Teff than Treg
- ubiquitination
- chromatin modifications
- cell cycle pathways
describe the importance of different translation activity in diff cells
even if genes are transcribed in 2 diff cells at the same time and to the same extent, translation allows 1 cell type to be silenced and the other to be active –> specific proteins can be readily available
describe the consequence of having specific clusters of mRNA with more ribosomes
the cell type is in a state of readiness and can respond quickly without taking the time to go thru transcription
describe importance of readiness for a Treg
Treg in inflamed site should be able to work quickly
what is an mRNA that is more translationally active in Teff?
eIF-4E
what is eIF-4E used for?
major translation initiation factor –> directs ribosomes to 5’ end of mRNAs and allows for translation of growth and proliferation genes
what is eIF-4E induced by?
growth factors, like IL2
how does IL2 stimulate eIF-4E and the result?
IL2 acts thru PI3K pathway, allowing for production of eIF-4E and which allows for translation of genes involved in growth and metabolism