Lecture 2: Microbiological concepts with a focus on bacteria Flashcards
Prokaryotic cells:
a) Name 2 prokaryotic microrganisms
b) are they larger or smaller than eukaryotic cells?
c) Do they have a nucleus or a nuclear membrane?
d) what is their DNA like?
e) do they have membrane structures?
f) do they have a cell wall? If yes what does it contain?
g) do they have larger or smaller ribosomes than eukaryotic cells?
a) eubacteria and archaea
b) much smaller (0.1 um - 10 um)
c) they don’t have a nucleus or a nuclear membrane
d) their DNA is unenclosed but similar in structure to eukaryotes
e) do not have membrane structures
f) they have a complex cell wall containing peptidoglycan (expect the mycoplasma species don’t)
g) smaller ribsomes
Eukaryotic cells:
a) Name 5 eukaryotic micorganisms
b) are they larger or smaller than prokaryotic cells?
c) Do they have a nucleus or a nuclear membrane?
d) what is their DNA like?
e) do they have membrane structures?
f) do they have a cell wall?
g) do they have larger or smaller ribosomes than prokaryotic cells?
a) Plants, animals, algae, fungi, protozoa
b) Larger 10-100 µm
c) have both nuclear membrane and nucleus
d) DNA inside nucleus and same DNA structure as ProkC
e) Membrane structures present
f) Plants, fungi & algae have simple cell walls (animals & protazoa do not)
g) Larger ribosomes (80s)
Study the structure of prokaryotic cell
a) name its 8 common structures.
b) do all prokaryotes have all these structure?
c) name two structure ALL prokaryotes have.
a) nucleiod region, ribosomes, plasma membrane, cell wall, capsule, prokaryotic flagella, fimbriae & pili
b) Not every bacteria has all of these structures
c) they will DNA floating around and a plasma membrane.
a) What is the function of the prokaryotic plasma membrane?
b) Is the cell wall and plasma membrane permeable or impermeable?
c) what is the function of the prokaryotic flagella?
d) what are the hair like structures of prokaryotes called and what is their function?
e) how does having this hair like structure affect our ability to get rid of the bacteria.
a) allows the movement of nutrients, wastes and signalling molecules in and out of the cell
b) Both the plasma membrane and cell wall are permeable
c) Flagella rotates to allow the bacteria to move.
d) the hair like structures are called fimbriae, the main function of which is to allow attachement.
e) The bacteria with fimbriae are harder to get rid of than bacteria w/o fimbriae
Important differences between prokaryotes and eukaryotes:
a) which one contains the membrane-bound organelles such as mitochondria and golgi apparatus?
b) which one has the cell wall that contains peptidoglycans?
c) There is an exception to question b, what is this exception?
a) Only eukaryotes contain, membrane-bounded organelles.
b) only prokaryotes have peptidoglycans in cell wall
c) EXCEPT, peptidoglycan is only found in the Bacteria/Eubacteria domain. Achaeans have simpler cell walls without peptidoglycan.
Cellular reproduction: Eukaryotes vs Prokaryotes
a) which one reproduces by binary fission?
c) which one reproduces by mitosis/ meiosis?
a) prokaryotes
b) eukaryotes
Important differences between prokaryotes and eukaryotes:
a) which one produces endospores?
b) are endospores the same as fungal spores? If not how are they different to fungal spores?
a) prokaryotes only
b) Endospores are not the same as fungal spores.
- Endospores are a survival mechanism for certain bacteria where as in fungi spore as for reproduction
Important differences between prokaryotes and eukaryotes:
a) which one can specialise and form tissue?
b) which one never changes?
a) eukaryotes
b) prokaryotes
Bacterial cell structures:
a) Where is the DNA/ chromosomes located?
b) where are the ribosomes located?
c) what is cytoplasm?
d) do all bacteria have capsules?
f) how do bacterial capsules affect us? Explain why.
g) do bacilli and cocci have similar structure?
a) Chromosomes (DNA) are located centrally
b) Ribosomes are scattered throughout the cytoplasm
c) Cytoplasm= liquid filled space inside the cell
d) Not all bacteria have capsules
e) The ones with the capsule are MORE pathogenic because capsules provide better adherence to host cells and thus it is harder for the immune system to get rid of
f) bacilli and cocci have the same structure except of course their shape, and both may or may not have capsules.
Bacteria Intracellular Materials:
a) What does the nuclear material contain and what is its purpose?
b) does it have a nucleus or nuclear membrane?
c) what are plasmids? and what is their function?
d) Plasmids are transferable between bacteria, explain what this is important.
e) what is the function of ribsomes?
a) includes the double stranded circular DNA which is the bacteria’s genetic control centre
b) no nuclear membrane = no nucleus
c) Plasmids: Small, closed, circular pieces of DNA
separate from the main DNA. These code for
non-essential functions e.g. Antibiotic resistance
d) transferring copies of plasmids is how bacteria transfer resistance between cells
e) proteins synthesis
Bacterial cytoplasm:
a) what is it composed of?
b) what type of reactions occur here?
c) What else happens in the cytoplasm?
d) what does it contain?
a) 80% composed of fluid and a complex of chemicals
b) enzymatic rxns for energy production
c) Also where all the cellular biosynthesis happens (protein production at ribosomes)
d) it contains all of the intracellular materials
Bacterial cell wall:
a) for those bacteria that have a cell wall (which most of them do), what does the cell wall provide?
b) Is the cell wall permeable or impermeable?
c) what kind of substances does the cell wall secrete of the cell?
d) What role does the cell wall play in Gram staining?
a) the cell wall provides rigidity and strength and thus helps the cell keep its shape it also provides protection.
b) Just like the membrane inside the cell wall, the cell wall also has to be permeable to substances to allow waste to go out and nutrients to come in
c) -secretes toxins out
- secretes enzymes out
- inter cell signals in/out
d) The structure of the bacterial cell wall is how we get the gram stain results of Gram +ve and Gram -ve as the cell wall composition between gram +ve and gram -ve bacteria differs.
Cell wall composition:
a) what is the main difference in the cell wall of Gram positive and Gram negative bacteria?
b) what determines if a cell is G.pos or G.neg?
c) what are the colours for gram pos and gram neg?
a) The main difference between Gram +ve and Gram -ve bacteria is the peptidoglycan layer
b) the amount of peptidoglycan in a cell wall that determines whether bacteria is gram +ve or gram -ve
c) G.pos= blueish purple colour
- G.neg= pink
Gram positive bacteria:
a) Is the peptidoglycan layer thick or thin?
b) how are the peptidoglycan layers held together?
c) do they have an outer membrane layer?
a) thick
b) vertically running through the peptidoglycans are teichoic acid and lipoteichoic acid and these hold the peptidoglycan layers together.
c) no they do not have an outer membrane layer, that is exclusive to Gram pos bacteria only.
Gram negative bacteria:
a) Is the peptidoglycan layer thick or thin?
b) do Gram neg bacteria have an outer membrane?
a) Thin layer of peptidoglycan
b) they have an outer membrane which is a lipopolysaccharide
Gram stain:
a) what is Gram type/ Gram reaction?
b) what microorganism is Gram stain used for?
c) what are the gram stain’s result based on?
d) describe the colour and cell wall of Gram pos
e) describe the colour and cell wall of Gram neg
f) what are gram variables?
g) how should you report your gram stain results?
h) how are the results abbreviated?
a) staining reaction
b) gram stains are used JUST for bacteria and bacteria ONLY.
c) the results are based on the cell wall composition of bacteria.
d) purple colour, large amount of peptidoglycan in cell wall
e) pink colour, small amount of peptidoglycan in cell wall
f) bacteria that stain as both purple and pink.
g) report results as: Gram Pos or Gram Neg, Bacilli or Cocci (always capitalize the G!)
h) often abbreviated to GPB, GPC, GNB, GNC
Method of gram staining:
What colour do G. Pos and G. neg bacteria start out as?
colourless.
Assume your bacteria has already been smeared on your slides:
a) what is the 1st step in gram staining.
b) does this step kill the bacteria?
c) what colour are your G. pos & G. neg bacteria in this step?
a) Heat fixation: to stick the bacteria to the glass slide so that they don’t wash off.
b) no bacterial is still alive and viable
c) colourless
Assume your bacteria has already been smeared on your slides:
a) What is the 2nd step in Gram staining?
b) what is the duration of this step?
c) what colour are your G. pos & G. neg bacteria in this step?
a) Crystal violet
b) leave for about 30 secs
c) purple
Assume your bacteria has already been smeared on your slides:
a) what is the 3rd step in Gram staining?
b) what is the duration of the step
c) what colour are your G. pos & G. neg bacteria in this step?
a) Iodine treatment
b) leave for about 30 secs
c) purper (lighter)
a) What is the chemistry behind step 3?
b) How does this affect Gram. Pos bacteria?
c) How does this affect Gram. Neg bacteria?
d) what fundamental difference does this result in?
a) the crystal violet and Lugol’s iodine molecules combine to make a larger molecule inside bacteria
b) In Gram-positive bacteria, once we wash the slide with the alcohol in the next step, those two molecules combined cannot wash out back through that peptidoglycan, they are too large.
c) In Gram-negative bacteria, that thin layer of peptidoglycan is not sufficient enough to hold these molecules inside the cell and they wash out.
d) And that is the fundamental reason for their colour difference
a) What is the fourth step in Gram staining?
b) what is the duration of the step
c) what colour are your G. pos & ; G. neg bacteria in this step?
a) decolourization using Alcohol or Acetone
b) for Alcohol wash for 15 secs, for acetone wash for 1 sec
c) Gram pos: purple, Gram neg: colourless
* gram pos still have the crystal violet + iodine complex inside them
a) What is the fifth step in Gram staining?
b) what is the duration of the step
c) what colour are your G. pos & G. neg bacteria in this step?
a) counter stain (safranin): using carbol fushin
b) leave for about 30 seconds
c) GP= purple, GN= pink!
a) What bacteria is the most commonly isolated bacterial cause of diarrhoea, particularly in western countries?
b) where is this bacteria found?
c) how does it spread?
d) is it Gram neg or Gram pos?
e) is it Bacilli or cocci?
f) what is a special feature about their shape?
a) Campylobacter
b) Found in raw chicken and animal faeces.
c) Spreads mainly through kids putting their hands in the environment and then in their mouth
d) Gram neg
e) Bacilli
f) the bacilli has a curve in them giving it helical shape that resembles a cartoon seagull.
a) what is glycocalyx?
b) Name its two types.
a) a gelatinous material which coats the surface of some bacteria
b) capsules & slime layers
Glycocalyx: capsules
a) what is a capsule’s organisation like?
b) what is its attachment like?
c) what is its function?
d) Some bacteria are typed by their capsule composition. Explain this using an example.
a) Highly organised
b) firmly attached
c) protect against phagocytosis
d) Haemophilus influenzae B – Hib
- the B represents the capsule type- the composition of its capsule is unique compared to other kinds of the same organism.