Lecture 1- Cell Biology and Society Flashcards
Topic 1- mRNA vaccines and COVID
Who first suggested synthetic mRNAs? and for what?
- Katalin Kriko, Hungarian-born scientist at UPenn
- Suggested as a means to address diseases
But she didn’t get grant money and was demoted
Topic 1- mRNA vaccines and COVID
What were the two problems with mRNA?
- mRNA causes an immune reaction
- mRNA can be degraded
Topic 1- mRNA vaccines and COVID
What was the solution for mRNA causing an immune reaction and being degraded?
changing a few of the bases, called modified mRNA
Topic 1- mRNA vaccines and COVID
What needed to be overcome once modified mRNA was developed?
How to get the naked mRNA into cells so that it could synthesize the target protein of itnerest and secrete it
(inject lipid nanoparticles)
Topic 1- mRNA vaccines and COVID
How did modified mRNA become a big thing? (critical application)
- Bio tech companies like Pfizer/BionTech and Modera took notice, and COVID hit with a vengance
What was Katalin Kariko awarded a nobel prize for?
- Nobel Prize in Physiology or Medicine for her work with Drew Weissman in 2023
- for mRNA idea
Topic 1- mRNA vaccines and COVID
mRNA vs. trad vaccine: components
- mRNA vaccine: contains mRNA
- trad vaccine: contains microbial protein or inactive microbe
Topic 1- mRNA vaccines and COVID
mRNA vs trad vaccine: production
mRNA: faster bc mRNA molecules are easier to produce
trad vaccine: slower and more difficult to produce the right type of protein
Topic 1- mRNA vaccines and COVID
mRNA vs trad vaccine: process
mRNA: components injected into the arm and serve as instructions for the body to make microbial protein. Closely mimics a native viral infection leading to B and T cell responses
Topic 1- mRNA vaccines and COVID
mRNA and trad vaccine similarities
- both are antigens determined for immune stimulation
- both teach the body to protect itself against a microbe
Topic 2: Plants
“Fighting Cancer with a Pinch of Parsley and Dill” (seed)
- extracts from parsley ad dill seeds are a new source of a precursor of GVA (an antimitotic drug now more easily synthesized)
- GVA inhibits the growth of tumor cells by halting cells in mitosis and is not cytotoxic to normal cells
- CellInsight Cx5 High Contenct Screening (HCS) used to visualize
Topic 2: Plants
What is GVA?
an antimitotic drug that inhibits the growth of tumor cells by halting cells in mitosis, but is not cytotoxic to normal cells
Topic 2: Plants
What is CellInsight CX5 High Content Screening (HCS)?
- automated imaging platform that acquires high-resolution images of stained cells
- allows researchers to evaluate the effects of various drugs on cellular functions by capturing and analyzing images of cells in large quantities (valuable for large-scale, high-throughput experiments in drug discovery)
- Gains quantitative data
Topic 2: Plants
Making Photosynthesis better
- photosynthesis efficiency is less than solar panels (range around 0.1%-2% effective)… but works well enough that evolution doesn’t try to improve it
- So scientists try to improve it
Topic 2- Plants
1/4/2019: “Synthetic glycolate metabolism pathways stimulate crop growth and productivity in the field”
- Major enzyme (RUBISCO) in photosynthesis sometimes uses oxygen rather than CO2, resulting in glycolate (which is toxic). Wasteful process called photorespiration- reduces efficiency by 50%
- So, researchers from the USDA and U of Illinois made transgenic tobacco plants (model organisms) that process glycolate in only one cellular compartment rather than throughout the entire cell.
- As a result, photosynthesis improved and plants grew 40% more biomass
Topic 2: Plants
12/9/2022: “Photosynthetic Mammalian Cells Slow Degenerative Disease”
- Researchers have generated photosynthetic human cells by transplanting “nanothylakoid units (NTU)” (engineered mini chloroplasts) into them
- When transplanted into degenerating cells in mice with osteoarthritis and illuminated, disease progression is prevented
- Works because NTUs produce ATP and NADPH (more energy and reducing agents) that may also be important to prevent againg as well as diseases
Topic 2: Plants
1/14/2021: “Plant-based Biomanufacturing a Growing Trend”
- Most biologics (drugs that are either made in cells through genetic engineering or harvested from native plants…come from something living) are generated in animal cells
- But now many like Pfizer’s elelyso to treat Gaucher disease is made in plants
- Department of Defense (DARPA) currently has a $100 M grant programto support plant biopharmaceutical technology
Topic 3- Transplants
Overview from “Transplants Without a Waiting List- Can Cell Biologics Help?”
- UNOS- United Network for Organ Sharing
- Demand outpaces the supply
- But 3-D tissue engineering may alter the transplant landscape
Topic 3- Transplants
3/21/2024: HMS+MGH, “In a First, Genetically Edited Pig Kidney is Transplanted into Human”
- Physicians transplanted a genetically engineered pig kidney that had 69 genes modified to make it less likely to cause immune rejection when transplanted into a patient (Xenotransplantation). The patient died 2 months later
- This pioneering “compassionate case” speaks to the power of cell/molecular biology and its role in the future of organ transplants
Topic 3- Transplants
Do we know enough about cell and molecular biology to make an artificial organ or tissue?
- Yes- it has been done
- Tissue engineering is a sub-discipline of regenerative medicine… includes building tissues in the lab that can use adult stem cells, somatic cells, or human embryonic stem cells
Topic 3- Transplants
“Organoid Culture to Match Human Small Intestines”
- Tissue engineered intestinal organoids developed in the Netherlands that generate paneth cells
- Not previously inclued in intestinal organoids, Paneth cells defend the intestine from pathogens with secreted proteins called “defensins”
- Defective or missing Paneth cells occurs in diseases such as inflammatory bowel disease
- So, this model better represents a tissue construct that can be used for testing new drugs for intestinal diseases
Topic 3- Transplants
Fully Functioning Artificial Human Heart Muscle Organoids
- Several research teams are developing cardiac organoids
- They could be used in the future as “band aids” subsequent to a cardiac event such as an infarct
- Alternatively, they could be used for drug discovery to identify drugs that can treat arrhythmia
- Tracy Hookway’s lab (Natalie Pachter) in BU’s BME is developing a cardiac fibrosis model that could in the future help screen for drugs that can treat cardiac fibrosis
Topic 3- Transplants
But can we make multi-chambered heart organoids? “Multi-Chambered Heart Organoids Allow Study of Organ Development and Defects”
- Scientists in Austria have developed a multi-chamber organoid that mirrors the heart’s intricate structure
- Applications: not for transplant but can be used in drug development and toxicology studies as well as heart development and defects
- Importance: cardiovascular disease is the leading cause of death worldwide
Topic 3- Transplants
“Organoids” such as a brain organoid can be generated from a variety of stem cells. But, can we transplant animal neurons into human brains to regenerate damaged circuits (may be possible in future)? “In a First, Neurons from Rat Stem Cells Regnerate Brain Circuits in Mice”
- Rat olfactory (smell) neural circuits were restored by mice stem cells that formed circuits in rats that lacked the circuit
- This suggests that this restorative application may be possible in aging or diseased humans using cells generated from humans or animals
Topic 3- Transplants
What is done to kidneys as the starting point to build a tissue engineered kidney?
- A donor kidney can be “decellularized” and then seeded with new stem cells as the starting point to build a tissue engineered kidney
- preserves the extracellular matrix as a structural scaffold
Topic 4-Nanomedicine
“Time Release Microparticles Could Deliver ‘Self-Boosting’ Vaccines”
- Most vaccines require multiple shots/boosters to be effective
- MIT bioengineers have created microparticles containing vaccine that could be implanted under the skin and “time-tuned” to release several “shots” in a process called “self-boosting vaccines”
- They are given only once and designed to boost spontaneously at specified times
- They resorb over time like degradable sutures
- Advantage: childhood vaccines in regions where ppl don’t have frequent access to medical care
Topic 4-Nanomedicine
“Tine Robots Detect and Treat Cancer by Traveling Deep into the Lungs”
- Tiny robot which travels deep into the lungs to treat cancer has been developed
- Ultrasoft tentacle which is 2 mm in diameter is controlled by magnets
- Can penetrate inaccessible lung cancer tissue deeper than conventional technology, resulting in less damage releasin chemotherapy agents
Topic 4-Nanomedicine
“Chinese use Nanomedical editing techniques (CRISPR-Cas9) on pre-implantation Human Embryos”
- CRISPR-Cas 9 discovered in 2008 was intended for lab use
- But a team using human embryos attempted to modify the gene reponsible for B-thalassaemia, a potentially fatal blood disorder using CRISPR
- Concerns now the Eugenics may happen in the future
Topic 4-Nanomedicine
“Chinese scientist claims birth of world’s first CRISPR babes, amid denial from hospital and international outcry”
- He Jiankui, he was fined and put in jail
Topic 4-Nanomedicine
“GEN-CRISPR Babies Researcher He Jiankui Sentenced to Three Years in Prison”
- 13 months after touching off an itnernational firestorm w his research that led to the birth of three germline-edited babies, He Jiankui was sentenced by Chinese authorites to 3 years in prison and a fine of 3M yuan ($430,000)
- J. Craig Venter applauded Chinese government for this
- Now can do experiments that are unethical. So, gov regulation is required in some cases like this one
Topic 4-Nanomedicine
“FDA Approves Casgevy, the First CRISPR Therapy, for Sickle Cell Disease”
- US FDA approved Casgevy- the first CRISPR-based gene editing therapy for sickle cell disease
- SCD was named by Linus Pauling the first “molecular disease” discovered and SCD children are born every 2 mins w 100,000 affected in the US
- Developed by Boston’s Vertex Pharmaceuticals- Patient stem cells are harvested and CRISPR is used to turn on fetal hemoglobin
Topic 5: Synthetic Biology
What is synthetic biology?
- Synthetic biology is the engineering discipline that encompasses the synthesis or creation of complex, biologically based/inspired systems which display functions that do not exist in nature using cell.molecule biology tools and techniques
- Ex. Engineered antibodies called bispecific trifunctional antibodies
Topic 5- Synthetic Biology
What are Bispecific, trifunctional antibodies?
- engineered antibodies used to treat cancer
- bring tumor cells together with killer T cells and Accessory cells (macrophages, natural killer cells, etc) so that the T cells can kill the cancer cells
Topic 5: Synthetic Biology
“Mechanisms in Aging Process Illuminated by Light Powered Mitochondria”
- Recent report of developing “optogenetically responsive mitochondria” to generate more ATP from mitochondria
- Cells were generated in C.elegans (translucent roundworm) that have a light sensitive proton pump in the mitochondria that when illuminated is similar to recharging rechargeable batteries. When the light is on more protons are pumped by the optogenetically designed proton pump and more ATP is generated
- So what happens to these C. elegans? They are healthier and their lifespan is extended. The researchers compare this to a “solar panel system” for mitochondria
Topic 5: Synthetic Biology
Who is J. Chraig Vener and why did he make history in cell and molecular biology?
- First self-relicating synthetic bacteria cell
- Researchers at the J. Craig Venter Institute (non profit genomic research org) published results describing the successful cnotruction of the first self-replicating synthetic bacteria cell.
- Team synthesized the 1.08 million bse pair chromosome of a modified Mycoplasma mycoides (bug that infects goats) and is the proff of principle that genomes can be designed in the computer, chmeically made in the lab, and transplanted into a recipient cell to produce a new self-replicating cell controlled only by the synthetic genome.
Topic 5: Synthetic Biology
What was the process for making the first self-replicating synthetic bacterial cell?
- Entire DNA of Mycoplasma mycoides
- Researchers buy fragments of DNA from a mail order catalogue. Each of the the four bottles of chemicals contains a section of the code.
- The fradments are putinto yeast, which “stitches” them together, gradually building a synthetic copy of the original DNA
- The artifical DNA is put into a recipient bacterium, which then grows and divides creating two daughter cells (one with the artifical DNA and one with the natural)
- Antibiotics in the petri dish kill the bacteria with the natural DNA, leaving the one with the synthetic DNA to multiply
- Within just a few hours, all traces of the recipient bug are wiped out and bugs with artificial DNA thrive.
- Possible uses are bugs capable of producing clean fuels and sucking CO2 out the atmosphere, mopping up oil spills, or generating drugs
Topic 6: Lab (Organs) on a Chip
What are labs/organs on a chip?
- New microfluidic devices called “labs/organs on a chip” promise to improve and change the field of disease diagnostics such as cancercell detection
- Evolved from advances in tissue engineering
- Now being used for drug toxicity testing call “in vitro toxicology” among many other things
Topic 6: Lab (Organs) on a Chip
Wyss Institute-Harvard University: “Fluidically linked BBB and Brain Organ Chips offer new method for studying the effects of drugs and disease on the brain and its blood vessels”
- Goal is to make 10 different “lab on a chip” human mimetic “organs” and hook them up together so that they can work for 4 weeks
- They reported a BBB 3 chip system that can be used to study BBB functions