lecture 1 biochemistry (week 1) Flashcards

1
Q

what is the resting Ca concentration within the cell?

A

100nm

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2
Q

what is the resting Ca concentration outside the cell?

A

20,000 and 100,000 fold higher than 100nm

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3
Q

where is Ca actively pumped to?

A

The ER, mitochondria, and extracellular space.

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4
Q

how does the Ca concentration affect signal transduction?

A

changes affect transduction differently - rapid transient versus slow and sustained - mediate different events

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5
Q

what does the Na & Ca antiporter do?

A

transports Ca outside the cell and Na into the cell

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6
Q

what is the ER? describe four key features.

A

the ER is an organelle

that forms a network of
membrane sacs or tube like structures (cisternae)

membrane continuous with the outer membrane

biggest organelle per volume

efficient store

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7
Q

what does Ca bind to? and where?

A

binds to storage proteins in the ER - so high Ca = calsequestrin

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8
Q

what is calsequestrin?

A

calsequestrin is a calcium-binding protein that acts as a calcium buffer within the sarcoplasmic reticulum.

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9
Q

how much ions move across the membrane when the channels are opened?

A

10^6 of ions across the membrane

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10
Q

how much ions move across the membrane in antiporters?

A

1000/s

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11
Q

how can an increase of Ca be caused?

A

certain GPCRs trigger an increase

caused by an opening of a Ca channel in the ER

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12
Q

describe the steps after an increase in Ca is detected.

A

signal molecules activate their receptor –> activated subunit activates phospholipase C –> PhC breaks down PiP2 into diacylglycerol and IP3 –> PKC binds to diacylglycerol –> activates PKC –> IP3 opens channel –> Ca binds to PKC

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13
Q

what are the domains of PKC?

A

C1A and C1B domains of PKC (regulatory)

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14
Q

what molecules bind to these domains?

A

DAG binds to C1A and C1B domains (regulatory)

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15
Q

describe the mechanism of action of Ca binding to PKC.

A

Ca binds to C2 domains of PKC (catalytic) –> changes shape of PKC and encourages binding to the membrane –> links PKC to phosphatidylserine

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16
Q

how is the overall signalling process regulated?

A

the binding of DAG + C1B binding activates the kinase (conformational change)

localised and activated by two events = no accidents

17
Q

what does an increase of ATP cause?

A

a closing of the ATP sensitive channels and depolarisation of the plasma membrane

18
Q

what does a depolarisation of the membrane cause?

A

an opening of the voltage gated ion channels and a rapid influx of calcium

19
Q

what does the rise of calcium cause in relation to insulin?

A

fusion of insulin containing vesicles with the PM

20
Q

what two classes of drugs make up 60-70% of all prescription drugs for high BP in the UK and the US?

A

Ca channel blockers and ACE inhibitors

21
Q

what is the drug bill of these two for the NHS? how much is estimated to be saved?

A

drug bill is < £200m but saves £250m in heart attacks

22
Q

what does the sinoatrial node initiate?

A

initiates heart beat

23
Q

describe the mechanism of action of CCBs

A

CCBs slow down heart beats and lets left ventricle fills completely which lowers the heart workload

24
Q

what do CCBs reduce?

A

the force of contraction and reduce the constriction of arteries

25
what are the classes of CCB? name an example of each
dihydropyridines --> nifedipine phenylalkylamines --> verapamil benzothiazepine --> diltiazem
26
what ATPase pumps Ca in from the cytosol?
SERCA (Sarco/Endoplasmic reticulum Ca-ATPase)
27
describe IP3s role in the process
IP3 binds to a binding site on a Ca channel in the ER --> conformational change which opens the channel allosteric modification of protein function allows rapid movement of Ca into the cytosol
28
what is allosteric modification of protein function
the binding of one small molecule has massive consequences for function of the protein
29
what does Ca bind to in relation to PKC? what does this binding encourage?
Ca binds to the C2 domain and changes the shape of PKC and encourages its binding to the plasma membrane by linking it to its negatively charged lipid - phosphatidylserine the enzyme is still inactive until DAG binds to the C1B domain - further conformational change which activates the kinase and its localised to the correct compartment
30
describe why CCBs work
reduce the constriction of arteries - dilated arteries lower the blood pressure slow down heart beats which allows the left ventricle to fill completely - which lowers the hearts workload reduce the force of contraction on the heart
31
how do we study Ca changes in cells?
this is done using fluorescence resonance energy transfer when there is a change in Ca concentration - the proteins begin interacting and this interaction can be seen using FRET