Lecture 1 Flashcards
Use of bacteria in Biotechnology and Industrial processes for the generation of useful and valuable products
True synonym for Biotechnology
Ergonomics: a process that is designed to generate products that are more efficient.
use microorganisms in order to produce some compound the first things we have to know are:
-Where do we find them?
-How many are there?
-How can I identify and use them?
Characteristics of microorganisms
Only identify microorganisms that can be cultured. 80% of microorganisms are not culturable, so their identification depends on metagenomic analysis based on 16S rRNA. There are not only non-culturable genera, but even phyla.
Types of culture medium
Defined culture medium: in which the exact amount of nutrients they contain is known.
Minimum culture medium: in which a minimum amount of nutrient is applied.
Complex and undefined media: that make use of industrial waste
Characteristics of undefined complex media
Source of carbon / nitrogen: agricultural or animal waste (slaughterhouses).
Source of vitamins: raw preparations of animal or vegetable products.
Source of iron: inorganic compounds.
Buffer: chalk or carbonates.
Antifoam: vegetable shortening or oils.
Conditions for monitoring during cultivation
-temperature (psychrophilic < mesophilic < thermophilic <
hyperthermophiles)
-pH
-salinity (halotolerant < halophilic < halophilic)
-O2: conditions the efficiency of the fermentation process in bioreactors.
how to preserve strains:
Periodic transfer
Mineral of slant
Minimal medium distilled water or water agar freezing in growth media
Drying
Freeze drying
Ultrafreezing
Fermentation
Any process that involves the mass cultivation of microorganisms, either aerobic or anaerobic
characteristics in the production of microbial products
To obtain the desired metabolite, it is crucial to understand the development stage and production conditions. The point of highest production may not always be the most cost-effective; sometimes the focus is on ease of purification. In addition, in biotransformation, the interest lies in the reactions carried out by micro-organisms. Microbial enzymes can also be purified for industrial applications.
types of microbial metabolism
- primary metabolism: designed to allow cell growth and cell division
- secondary metabolism: this is where the bioproducts of interest are normally generated.
concepts related to growth of microorganisms
- Growth: increase in cell number or microbial mass.
- Growth rate: change in cell number or mass per unit time.
- Generation: interval to originate two cells from one.
- Generation time: time taken for one generation.
types of fermenters
1) Lift-Tube: Density difference of gas bubbles entrained in medium results in fluid circulation
2) Solid-state fermentation: growth of culture without presence of added free water
3) Fixed- bed reactor: microorganisms on surfaces of support material; flow can be up or down
4) Fluidized-bed reactor: microorganism in surfaces of particles suspended in liquid or gas stream-upward flow
5) Dialysis culture unit: waste products diffuse away from the culture. Substrate may diffuse through from membrane to the culture
6) Continuos culture (chemostat): medium in and exceses medium to waste withwastedcells
Why genetic engineering?
Narural strains are often not very protective, so optimisation of fermentations is required for the micro-organisms to produce as much of the metabolite as possible. For this optimisation, culture variables such as the amount of nutrients, pH, temperature and oxygenation are often controlled. However, strain improvement by generation of mutants (“strain improvement” → mutate and screen) is more common.
Types of genetic engeeniring
1) Chemycal mutations: base analogs (5-bromouracilo and 2-aminopurina), alquilant, hidroxilant and intercalant agents
2) Physical agents: las radiaciones no ionizantes (UV → dímeros de pirimidina) o las radiaciones ionizates (rayos X → deleción de bases / roturas / entrecruzamientos )
3) Protoplastfusion
Genetic manipulations types
When production cannot be improved by mutagenesis, DNA transfer between organisms can be performed, which involves the use of different genetic tools.
- Protein engineering: site-directed mutagenesis by insertion of short DNA sequences.
- Combinatorial biology: transfer of genetic information between different organisms.
- Gene expression can also be modified to obtain strains of industrial interest.