Lec 15 DNA Replication & Repair Flashcards

1
Q

DNA replication
How does base pairing work

A

both strands used as templates
semiconservative

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2
Q

DNA replication origins
the positions at which the double stranded DNA is first open for replication. what is its span?

A

100 base pairs

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3
Q

DNA replication origins
the positions at which the double stranded DNA is first open for replication. what type of proteins do sequences attract?

A

initiator proteins

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4
Q

DNA replication origins
the positions at which the double stranded DNA is first open for replication. What type of sequences do they prefer and why

A

sequences with fewer hydrogen bonds and easy to open

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5
Q

DNA replication origins
the positions at which the double stranded DNA is first open for replication. at which base pairs?

A

often A-T rich stretches of DNA

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6
Q

Does eukaryotes or prokaryotes have multiple replication origins and how many?

A

Multiple replication origins in eukaryotes
10,000 in human genomes but only one in bacteria

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7
Q

Explain replication forks

A

two replication forks are formed at each replication origin
move in both directions

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8
Q

how fast are replication forks

A

move at a rate of 1000 bp/sec in bacteria and 100 bp/sec in human

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9
Q

Which strand grows continuously

A

leading strand

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10
Q

which strand grows discontinuously and what is this called?

A

lagging strand
Okazaki fragments

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11
Q

What does helicase do?

A

unzips the double helix ahead

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12
Q

what does single strand DNA binding protein do

A

prevent DNA from re-forming base pairs

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13
Q

what do DNA primase do and how long

A

make primers (10 bases long) for DNA replication

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14
Q

what does DNA polymerase (3) do

A

adds nucleotides to the 3’ end of a growing DNA

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15
Q

What direction does DNA synthesis go

A

goes unidirectionally (5’->3’)

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16
Q

what does DNA polymerase 1 do

A

replaces the RNA primers with DNA

17
Q

what does DNA ligase do

A

joins the Okazaki fragments

18
Q

what are the ends of chromosomes called

19
Q

Replication at chromosome ends
telomers contain what repetitive base pair?

A

contain repetitive 6 base pair DNA sequence which is TTAGGG

20
Q

how long are telomeres

A

10-15 kb long

21
Q

when do telomeres become shorter

A

after each DNA replication

22
Q

What do telomerase complex consist of and what do they do?

A

Telomerase complex consists of reverse transcriptase and telomere RNA which can add multiple copies of the repeats to the ends and slow down shortening of telomere

23
Q

If telomerase complex activity is low what does it result in?

A

aged cells

24
Q

If telomerase complex activity is high, what does it result in?

A

cancer cells

25
If there is a replication mistake what repairs it?
repaired by the 3'->5' exonuclease activity of DNA polymerase (3)
26
what does un-repaired mutations cause
can cause disease ex: sickle cell anemia
27
What are the consequences of DNA damage caused by chemical reactions
deamination- point mutation depurination- deletion
28
What is the T-T dimer caused by UV radiation
T-T dimer: covalent bond between two thymine's
29
explain Replication Process 5 steps
open DNA double helix build primers which are RNA assemble complementary strand (DNA synthesis) replace RNA primers with DNA nucleotides Join Okazaki fragments (200 bp long)
30
What is this and how does it work?
This is replication origin
31
what is depurination
purine is removed purine is 2 ring with N base (A&G) entire genomic nitrogenous base is gone water req
32
how many base pair on chromosome
5 cm/0.34 nm/bp= 15X10^7 bp