Lab Quiz #2 Flashcards

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1
Q

Endospore Stain

A

The endospore stain is a differential stain used to visualize bacterial endospores.

Because of their tough protein coats made of keratin, spores are highly resistant to normal staining procedures. The primary stain in the endospore stain procedure, malachite green, is driven into the cells with heat. Since malachite green is water-soluble and does not adhere well to the cell, and since the vegetative cells have been disrupted by heat, the malachite green rinses easily from the vegetative cells, allowing them to readily take up the counterstain.

Using older cultures for endospore stains is better because endospores don’t form until starvation, which is a state more likely to be reached by older cultures than newer ones.

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2
Q

Endospore Stain Protocol

A
  1. Perform a bacterial smear of Bacillus or the organism you want to stain.
  2. Place a small piece of bibulous paper over the smear. Saturate the paper with malachite green.
  3. Heat the slide gently over the Bunsen burner for 5 minutes. Be sure to keep the bibulous paper
    saturated with malachite green during heating. If the slide is steaming, you’re okay; if it stops
    steaming, add more malachite green!
  4. Remove the bibulous paper from the slide, and rinse the slide gently with water. Dispose of the
    used bibulous paper in the trash. DO NOT leave the bibulous paper in the sink or drain!
  5. Counterstain with safranin for 2 minutes.
  6. Rinse the slide gently with water.
  7. Carefully blot the slide dry with bibulous paper.
  8. Observe the slide under the microscope, using proper microscope technique.

Endospores will stain green. Parent cells will stain red.

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3
Q

Endospore Location

A

The position of the endospore differs among bacterial species and is useful in identification. The main types within the cell are terminal, subterminal, and centrally placed endospores. Terminal endospores are seen at the poles of cells, whereas central endospores are more or less in the middle. Subterminal endospores are those between these two extremes, usually seen far enough towards the poles but close enough to the center so as not to be considered either terminal or central. Lateral endospores are seen occasionally.

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4
Q

Common Endospore Forming Bacteria

A

The Gram+ rods common in soil include spore-forming bacteria. The genera Bacillus and Clostridium are the best known, and species of these 2 genera are infamous as the causative agents of wound-generated infections (Clostridium tetani, C. perfringens), and respiratory disease (Bacillus anthracis), and food poisoning (C. botulinum, B. cereus, among others). A distinguishing feature of both genera, and a long list of less common others, is production of endospores.

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5
Q

KOH Test

A

GN results are harder to decipher and trust than are GP because GP species tend to be larger celled, and age of the culture strongly affects outcome with GN microbes. In fact, E. coli results are only trustworthy for the Gram Stain if the cultures are 48 hours old (otherwise, the results are considered Gram dubious).

The KOH test provides a necessary confirmation after a GN result. For a reliable KOH test the organism MUST BE growing on TSA (Tryptic Soy Agar). It uses KOH in an attempt to dissolve the cells.

  • Gram+ cells with their tough thick cell walls of peptidoglycan do not lyse.
  • Gram- cells with their thinner more porous cell walls lyse. DNA comes out of the cells, and the bacterial smear becomes a viscous, stringy, sticky mess.
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6
Q

KOH Test Procedure

A

1) Have everything ready for steps 2-4 beforehand, the bacteria should not be allowed to dry on the slide.
2) Aseptically, place one or two large colonies on a slide (use several small colonies or a few loops of cells if needed) from your unknown stock. The bacteria do not need to be from fresh growth, but they should not be so old that many are dead.
3) Add 1 drop of KOH (.3M?) on top of the cells.
4) Let it sit for 1 minute.
5) After waiting for a minute, add your cool loop to the bottom of the mixture and slowly draw the loop up.
6) If you see viscous strings and stuff, the cells are Gram-.
7) If you see a cloudy cellular liquid, the cells are Gram+. Isn’t this simple!
8) Repeat the insertion of the loop and slowly drawing it up to be certain of your results. Caution, using mostly dead or dried cells or inserting a hot loop can distort the test results.

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7
Q

KOH

A

An inorganic compound and a strong base. It will lyse the cell that’s gram- to extract the DNA, which is why getting some on the skin is dangerous. Gram+ is protected by a thick peptidoglycan wall, which human skin doesn’t have.

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8
Q

Fungal vs. Bacterial Spores

A

Fungi reproduce by producing cells called spores. While these fungal spores are somewhat resistant to destruction they are not usually pathogenic to humans. Certain bacteria can produce a thick walled spore structure which allows them to survive adverse environmental conditions for prolonged periods of time.

The bacterial spore is more properly called an endospore because its function is to protect the bacterial DNA from destruction by conditions or substances in the environment that destroy non-endospore forming bacteria. Confusion is widespread because many writers use the term spore for both processes while assuming that their readers already know the difference.

Fungal spores are air-dispensed while endospores are not, which is why sporulating fungi is much more likely to present a contamination problem.

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9
Q

Mannitol Salt Agar Selective

A

The ingredient that makes MSA selective is 7.5% NaCl. This level of salt is too high for the growth of enterics. So MSA is specifically selecting to favor growth of common skin bacteria over contaminants and also against Gram- bacteria like enterics/Gram- rods of the G.I. tract.

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10
Q

Mannitol Salt Agar Differential

A

It differentiates pathogens from other forms common on the skin. Gram+ cocci of skin are oxygen tolerant forms and have some types that ferment sugars to acid. All species can use glucose, but pathogens are the only ones that can use mannitol. So MSA only provides that one sugar. Pathogenic skin bacteria ferment it and produce acid, while others generate end products that are actually basic. Phenol Red stains neutral and basic cells red, and acidic pathogens yellow.

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11
Q

Hemolysis Types

A

Gamma - no destruction (Staphylococcus epidermidis)
Alpha - mild destruction often yielding a greenish-brownish cast and weakly defined margin. (Micrococcus Luteus)
Beta - total destruction with clearing and a sharp margin. (Staphyloccoccus Aureus)

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12
Q

Coagulase

A

It’s a protein enzyme that enables conversion of fibrinogen to form fibrin. It reacts with prothrombin in blood and results in clotting of blood. The fibrin is used to coat the surface of bacteria ipon contact with blood and its proposed that the fibrin helps bacteria resist phagocytosis.

A positive result for the test will result in agglutination (chunks) of plasma. Negative will result in smooth emulsion (suspension of small globules of one liquid in a second liquid with which the first will not mix).

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13
Q

Staphylococcus vs. Streptococcus

A

Staph is catalase positive (products catalase) while strep is not.

Staphylococcus is a genus of Gram-positive bacteria. Under the microscope, they appear round (cocci), and form in grape-like clusters.

Streptococcus is a genus of spherical Gram-positive bacteria belonging to the phylum Firmicutes and the lactic acid bacteria group. Cellular division occurs along a single axis in these bacteria, and thus they grow in chains or pairs.

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14
Q

Bacteria of the Skin

A

Skin is a nasty environment for a microbe. It is dry and tough. Hair follicles and glands, are well-defended by secretions (oils, salt). The outer layer is difficult to penetrate, so pathogens capitalize on cuts and punctures. Most skin dwellers tolerate or profit from oxygen, and resist drying. Typically, they have aerobic tendencies and produce oxidase and catalase.

Three common skin bacteria are all Gram + cocci, with cells in bunches or clusters. Staphylococcus is a facultative anaerobe, while Micrococcus is an aerobe. Staphylococcus epidermidis and Micrococcus luteus are harmless; S. epidermidis forms small circular disc-like white colonies, and M. luteus produces lemon-colored ones. Staphylococcus aureus is an opportunist. When induced to become virulent it produces coagulase and clots blood, and is beta-hemolytic. It ferments mannitol to acid (the yellow on MSA plates). It can cause pneumonia, meningitis, chronic bone infections and is best known for boils and hard-to-heal skin infections. It releases a toxin and is famous for food poisoning. About a third of all people carry S. aureus on their skin.

Propionibacterium lives in hair follicles where it feeds on waxy or oily secretions. To break down the food, it secretes acid that inhibits the growth of other bacteria. P. acnes causes the skin infections that lead to pimples and acne. Again, this is a Gram + form, but is pleiomorphic.

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15
Q

Eosin Methylene Blue Media

A

The media contains Bile Salts which create an environment hostile to the Gram+ bacteria of skin (selective). It also contains 2 dyes, Eosin and Methylene Blue that favor growth of Gram- bacteria and allow for differentiation of lactose fermenters.

Unlike MSA with Phenol Red, EMB media, with its 2 dyes, allows for acid production to free dye molecules such that organisms which ferment lactose take up stain from the Eosin and turn pink while fast fementers of lactose take up dye from Methylene Blue as well and turn a metallic green. Doubly differential!

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16
Q

MacConkey Agar

A

MacConkey is selective and differential for enterics. The colonies of species able to ferment lactose will be pink while those that can’t will not take on a color. Native gut bacteria can ferment lactose, therefore potential pathogens of this media will NOT take up the pink color.

17
Q

Enteric

A

Refers to anything related to intestinal.

18
Q

Oxidase Test

A

The oxidase test identifies organisms that produce the enzyme cytochrome oxidase. Cytochrome oxidase participates in the electron transport chain by transferring electrons from a donor molecule to oxygen. Aerobic microbes with an electron transport chain containing cytochrome oxidase will oxidize the test solution.

The oxidase reagent contains a chromogenic reducing agent, which is a compound that changes color when it becomes oxidized. If the test organism produces cytochrome oxidase, the oxidase reagent will turn blue or purple within 15 seconds (positive). If it doesn’t, no color change, negative.

19
Q

Catalase Test

A

The catalase test is also one of the main three tests used by microbiologists to identify species of bacteria. The presence of catalase enzyme in the test isolate is detected using hydrogen peroxide. If the bacteria possess catalase (i.e., are catalase-positive), when a small amount of bacterial isolate is added to hydrogen peroxide, bubbles of oxygen are observed.

The catalase test is done by placing a drop of hydrogen peroxide on a microscope slide. Using an applicator stick, a scientist touches the colony, and then smears a sample into the hydrogen peroxide drop.

  • If the mixture produces bubbles or froth, the organism is said to be ‘catalase-positive’. Staphylococci and Micrococci are catalase-positive. Other catalase-positive organisms include the family Enterobacteriaceae (E. coli, Enterobacter, Salmonella, Pseudomonas).
  • If not, the organism is ‘catalase-negative’. Streptococcus and Enterococcus spp. are catalase-negative.

While the catalase test alone cannot identify a particular organism, combined with other tests, such as antibiotic resistance, it can aid identification. The presence of catalase in bacterial cells depends on both the growth condition and the medium used to grow the cells.

20
Q

Lactose Fermenters

A

Enterobacter and Escherichia ferment lactose. Native to the human gut.

Pseudomonas and Salmonella do not. These are potential pathogens.

21
Q

Citrate Agar

A

If an organism has the right enzymatic capabilities to breakdown, take up, and metabolize citrate (a type of carbohydrate), the indicator media will go from jade green to cerulean blue. So, you can now assay for the use of mannitol, citrate, and lactose, with the various media you know to date.

Citrate use happens to be such a good sorter of the enteric bacteria that it is part of a battery of tests routinely used (the IMViC tests, with Citrate use being the final C). As MSA Media contains beef to feed organisms generally and mannitol as the only fermentable sugar (thus generating an acid and resulting color change), so Citrate Agar supports the growth of microbes generally with beef and contains citrate as the only fermentable sugar (you know Citrate from the Citric Acid Cycle or TCA Cycle=Kreb’s) such that citrate users generate a color reaction.

22
Q

Bacteria of the Gastrointestinal Tract

A

Not much lives in the upper portion of the G.I. tract. Swallowed material descends to the stomach, where some lactobacilli and Helicobacter pylori live. Others perish in the acid of the stomach. The small intestine is home to a few species of lactobacilli and Enterococcus faecalis (Gram + coccus). In amazing contrast, the large intestine, or colon, has a diverse and abundant microbial biota. Most are harmless; many beneficial, aiding in the breakdown of plant fiber and providing miscellaneous nutrients and some vitamins critical to your health.

The biota in the large intestine differs among species and varies among humans depending upon diet, age and geography. It is similar to the biota recovered from feces. The predominant species are Bacteroides (Gram – rod) and Bifidobacterium (Gram + coccus), which may be 10,000 times more abundant than the Gram – rods (Enterobacteriaceae) you know of as coliforms or enterics. Common forms that are anaerobes include Bacteroides, Bifidobacterium, Lactobacillus and Clostridium (both Gram + rods). The forms familiar to you are the facultative anaerobes that are called coliforms and ferment lactose, including Escherichia, Enterobacter, Klebsiella, and Citrobacter, Proteus, Serratia, and more. Note: 2 major phyla in the large intestine and these are Bacteroidetes = GN rods, non-sporing, ‘healthy colon,’ and Firmicutes, cocci and rods including spore-formers like Clostridia, Bacilli, Lactobacillus and Streptococcus associated with obesity if over-represented.

23
Q

Bacterial Growth Curve

A

The term growth has different meanings to a microbiologist. Growth sometimes refers to an increase in cellular constituents. This often leads to the cells growing longer and larger, and is usually accompanied by some type of cell division. Binary fission and other cell division processes bring about an increase in the number of cells in a population. Therefore the term growth is also used to refer tot he growth in size of a population.

Population growth often studied by analyzing the growth curve of a microbial culture. When microbes are cultivated in liquid form, they usually are grown in a batch culture–that is, they’re incubated in a closed culture vessel with a single batch of medium. Because no fresh medium is provided during incubation, nutrient concentrations decline and concentrations of wastes increase. The growth of a population of microbes reproducing by binary fission in a batch culture can be plotted as the log of the # of viable cells vs. the incubation time. The reslting curve has four phases. Lag, Exponential, Stationary, and Death.

24
Q

Calculation of the Mean Growth Rate

A

Let:
N0 = the initial population number.
Nt = the population at time t.
n = the number of generations in time t.

For populations reproducing by binary fission:
Nt = N0 x 2^n

Solving for n, the number of generations, where all logs are to the base 10:
logNt = logN0 + n x log2
n = (logNt - logN0)/log2 = (logNt - logN0)/0.301

The mean growth rate is the number of generations per unit time. Thus

MGR = n/r = (logNt - logN0)/0.301t

25
Q

Direct Counts

A

Determining microbial numbers using a counting chamber. Gives info about the size and morphology or microbes. Petroff-Hausser counting chambers can be used for counting bacterial and archaeal cells; hemocytometers can be used for all cell types. Counting chambers consist of specially designed slides and coverslips; the space between the slide and coverslip creates a chamber of known depth. On the bottom of the chamber is an etched grid that facilitates counting the cells. The number of microbes in a sample can be calculated by taking into account the chamber’s volume and nay dilutions made of the sample before counting. One disadvantage of using counting chambers is that to determine the population size accurately, the microbial population must be relatively large and evenly dispersed because only a small volume of the population is sampled.

26
Q

Plate Counts

A

Methods used to determine number of viable microbes in a sample. They only count those cells that are able to reproduce when cultured.

Two commonly used procedures are the spread-plate and the pour-plate techniques. In both of these methods, a diluted sample of microbes is dispersed over or within agar. If each cell is far enough away from other cells, then each cell will reproduce, generating a distinct colony. The samples should yield between 30-300 colonies for most accurate counting, and the count is made more accurate by use of a colony country.

Once the number of colonies is known, the original number of viable microbes in the sample can be calculated from that number and the sample dilution. For example, if 1.0 mL of a solution diluted by a factor of 1 x 10^6 yielded 150 colonies, then the original sample contained around 1.5 x 10^8 cells per mL. However, because it’s not possible to be certain that each colony arose from an individual cell, the results are often expressed in terms of colony forming units (CFU), rather than # of microbes.

27
Q

Dilution Factors

A

Label the tubes 10^-1, 10^-2, 10^-3, and 10^-4. These are the dilution factors. Pipette 9 mL of water intot he 4 empty tubes. Do a serial dilution of the original samply by delivering 1 mL of food colored solution into tube 1, mixing well, then delivering 1 mL from that into tube 2, mix, one mL of that into tube 3, mix, etc.

28
Q

Calculate Cell Density from CFU’s

A

Take the CFU, like 560. And then multiply it by ten to the power of the dilution factor, which in this case may be 10^-6.

So 560 x 10^6 (positive)
5.60 x 10^-8