L5 Amino Acids and Proteins Flashcards

1
Q

Monomeric units are joined by what type of bonds to form what?

A

Monomeric units are joined by covalent bonds to form macromolecules

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2
Q

Macromolecule/complexes are held together what kind of interactions

A

by non covalent interactions

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3
Q

The formation of macromolecules an complexes involve what type of interaction

A

weak interaction

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4
Q

What does multiple weak interaction’s in the formation of macromolecules and complexes do to the stability of these complexes?

A

multiple weak interactions increases the stability of these complexes

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5
Q

What does breaking these interactions in the formation of macromolecules and complexes do

A

loss of function and structure

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6
Q

solubility depends on what

A

the ability to form hydrogen bonds

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7
Q

Polar biomolecules form what kind of bonds?

A

H bonds

and are water soluble

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8
Q

Can non polar biomolecules form H bonds? and are they soluble in water?

A

NO
Insoluble in water

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9
Q

Amphipathic Molecule

A

An amphipathic molecule is a molecule that has both polar and non-polar parts.

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10
Q

How do the hydrophobic and hydrophilic regions of Amphipathic Molecules react?

A

Hydrophobic regions cluster together

Hydrophilic regions interact with water

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11
Q

micelle

A

A micelle is a spherical structure that forms in water by the aggregation of surfactant molecules, with their hydrophobic (water-hating) tails inward and hydrophilic (water-loving) heads outward.

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11
Q

proteins play crucial roles in virtually all
biological processes, as:

A

Catalysts – enzymes

Transporters (e.g. O2
, Fe)

Structural support (e.g., collagens in skin
and bone)

Machines (e.g., muscular contraction and
motion)

Immune protection (e.g. immunoglobulins)

Ion channels

Receptors (for hormones,
neurotransmitters, etc.)

Ligands in cell signalling (growth factors
etc.)

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12
Q

Key features of proteins

A

proteins are macromolecules composed of amino acids that are joined covalently to give the sequence of the protein

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13
Q

the amino acid sequence of a protein is encoded by what

A

a gene

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14
Q

The nucleotide sequence of a gene determines…

A

The amino acid sequence of
a protein

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15
Q

The polypeptide chain folds into:

A

complex and highly specific three dimensional structure, determined by the sequence of amino acids

16
Q

The folding of proteins depends on

A

the chemical and physical
properties of the amino acids

17
Q

The three-dimensional shape of a protein dictates

A

the properties and
function of the protein

18
Q

proteins are polymers of

A

amino acids

19
Q

what does an amino acid consist of

A

Amino acids consist of a central carbon atom (the α-carbon)

covalently bonded to:
* an amino group (-NH2)
* a carboxyl group (COOH)
* a hydrogen atom (-H)
* a distinctive R group (side chain)

20
Q

What isomer is the only isomer found in proteins?

21
Q

Peptide bond formation

A

When two amino acids form a dipeptide through a peptide bond, it is a type of condensation reaction.

22
Q

Peptide bonds are

23
Q

What makes a peptide bond planar ?

A

The C-N within the CONH peptide bond has partial
‘double bond’ characteristics. This makes the peptide
bond rigid and planar

24
Trans and Cis peptide bonds
TRANS C alpha on opposite sides of peptide bond CIS C alpha on the same side of peptide bond can lead to steric clashes and hence cis peptide bonds are rare
25
How are amino acids classified?
Classified according to the chemical properties of R groups
26
Classification of amino acids - 20 amino acids
Subcatergorised by non polar amino acids (Hydrophobic) Polar uncharged amino acids (hydrophillic) Polar charged amino acids (hydrophillic)
27
Ionization states of amino acids
Unionised form of and amino acid (NH2) (COOH) Zwitterion form of an aa (NH3+) (COO-)
28
Non-polar
Nonpolar refers to a substance whose molecules do not have opposite positive and negative poles
29
Polar Molecule
A polar molecule is a molecule containing polar bonds where the sum of all the bond's dipole moments is not zero.
30
What is an isomer
each of two or more compounds with the same formula but a different arrangement of atoms in the molecule and different properties.
31
ionize meaning
convert (an atom, molecule, or substance) into an ion or ions, typically by removing one or more electrons
32
At certain pH (called ‘pI’), the aa will exist as a Zwitterion - what is the overall charge
and the overall charge will be zero (-1 + 1 = 0)
33
Base accepts or donates proton
Base accepts proton
34
Acid donates or accepts proton
Acid donates proton
35
Types of Bonds between biomolecules
Hydrogen Bonds - bonds between neutral groups or between peptide bonds Ionic interactions: attraction and repulsion hydrophobic interaction van der Waals interaction
36