L3 - Early molecular events in development of cancer Flashcards

1
Q

What is the fidelity of DNA repair?

A

Extremely high but each cell experiences thousands of DNA lesions per day

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2
Q

What are 3 causes of a mutation being allowed through repair?

A
  1. repair is not 100% effective and gets less precise with age
  2. Can be compromised by mutation
  3. Can be overwhelmed by number of damaged sites (massive carcinogen exposure)
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3
Q

What is needed other than a mutation to cause cancer?

A

Programmed cell death must also be disabled by mutation

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4
Q

How many errors does DNA polymerase 1 make and what does proofreading change this to?

A

1 in 10^5

Proofreading to 1 in 10^7

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5
Q

What does the Kaplin Mayer plot show?

A

Survival of a population of mice over 12 months.
WT survives 100%
Double mutation in proofreading subunit ends at 35%

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6
Q

How does the mismatch repair system know what the right sequence is?

A

Does it during replication and uses the okazaki fragments to detect the correct sequence

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7
Q

How does the mismatch repair system work?

A
  1. hMSH2 and hMLH1 scans new DNA for nicks

2. Remove strand with error then resynthesised

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8
Q

What cancer has mutations in the mismatch repair system?

A

Hereditary nonpolyposis colon cancer

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9
Q

What is the mutation of mismatch repair in the TGFb receptor and what does it cause?

A

2 more As added to sequence

Truncated receptor protein

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10
Q

How was it shown that the loss of MLH1 is early in the development of cancer?

A

Stained for MLH1 in endometrial tissue.

Showed cells that were not in the tumour had no MLH1 too.

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11
Q

How can pyrimidines damaged by UV light sometimes be repaired wrongly?

A

If they are not repaired in time the cell uses ‘error prone’ DNA polymerase to replicate past the lesion.
This can sometimes incorporate the wrong base fixing the mutation

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12
Q

Of 15000 cancers of the p53 gene in lung tumours ….. how many were caused by G-T transitions?

A

15% of total

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13
Q

In mutations of p53 gene in lung cancers how did smoking change the amount of G-T transitions? What does this mean?

A

From 21% in non smokers to 33% in smokers

Type of mutation provides clues about mutagenic agent

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14
Q

What can you take from the locations of common mutations in cancers?

A

Clues about the functional sites of the protein

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15
Q

What does melanin do?

A

Forms a cap on the top of skin cells protecting again UV damage

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16
Q

What are the 4 main pathways for correcting DNA damage?

A
  • Mismatch repair
  • Nucleotide excision repair
  • Base excision repair
  • Double strand break repair
17
Q

What repair system is used for UV damage repair?

A

Nucletide excision repair (NER)

18
Q

How does the NER system work?

A
  • Detects distortion
  • Excision upstream and downstream from lesion by endonuclease
  • DNA synthesis by specialist polymerase
  • Ligation
19
Q

About what age does cancer percentage shoot up and what is the difference with people with a mutation in NER system

A

Around 40 and hits near 100% at about 90.

With mutation tumours start at 0 and hit 100% at 25

20
Q

What is Xeroderma pigmentosum?

A

Patients with mutations in NER who have extreme sensitivity to UV light that results in skin cancer

21
Q

What does base excision repair (BER) usually deal with?

A

Spontaneous deamination

22
Q

How does BER work?

A
  • Detection and removal by DNA glycosylase
  • Removal of sugar and phosphate by endonuclease and phosphodiesterase
  • DNA synthesis by polymerase beta
  • ligation
23
Q

What can cause a double strand break?

A

Ionising radiation or ROS
DNA topisomerase inhibitors (chemo)
Replicative stress

24
Q

How does double strand break repair work?

A

Homology based repair uses the other chromatid as template

  • Resections upstream and downstream by exonuclease
  • Melting of helix on normal chromatid
  • Invasion in normal chromatid and synthesis
  • Rejoining of severed strands
25
Q

When can a cell go through sister chromatid double strand break repair?

A

During G1 and S/G2

26
Q

How many times do human cells undergo chromatid exchanges per round of replication?

A

about 10

27
Q

What are breast cancer susceptibility genes that are involved in double strand break repair?

A

BRCA1 and BRCA2

28
Q

How does non-homologous end joining (NHEJ) work?

A

Enzymes detect and bind to the free end of the DNA and catalyze ligation.
Can lead to large loss of sequence.