l3 - covalent & non covalent bonding Flashcards
2 ways hydrogen can achieve a full outer shell
- ionisation via losing an electron to form H+
- sharing an electron with another atom
ionic bonding
- metal + non metal ion
- metals lose electrons to form salts
- stable due to energy of electrostatic interactions
covalent bonding
the electrostatic force of attraction between the positively charged nuclei of the 2 bonded atoms and their shared pair of electrons
what type of spins do electrons have in covalent bonding?
opposite spins
do the electrons in a covalent bond necessarily belong to any of the atoms?
no as each electron is able to exist in any part of the bond orbital so belongs so both of the nuclei of the bonded atoms
bond dissociation energy
measure of how strong a bond is.
when you bring 2 atoms together there is a release of energy, so to break the bond you need to put energy back in
the stronger the overlap of orbitals, the….
the stronger the bond
sigma bonds
- strongest covalent bond
- 2e-
- overlap of orbitals
- when 1s and 2p orbitals overlap you end up with a small lobe of electron density on far side of nuclei
pi bonds
- weaker as c=c bond has lower energy
- formed from sideways overlap of 2 orbitals lobes on one atoms and 2 orbital lobes on another
- nodes between the lobes have no electron density
- lobe above and below sigma bond
- pi bonds form with an existing sigma bond
- carbons are sp2 hybridised
lone pairs
- unshared electron pairs
- decrease bond angle by 2.5 as lone pairs repel more strongly
- not involved in bonding
hydrogen bonding
- electrostatic attraction between H and an electronegative atom
- lone pairs are H bond acceptors
- so h bonds are donors
- strength depends on the donor and acceptor atoms, their environments + geometries
h bonding in small molecules
causes inc in MP, BP, solubility & viscosity
why is ice less dense than water?
due to H bonding, as H bonds hold the molecules in a more open space
van Der walls (induced/ permanent dipole dipole forces)
- molecules with permanent dipoles can temporarily distort the electric charge in a nearby polar or nonpolar molecule acting as an induced dipole
- Molecules with temporary dipoles can be caused by electron moving randomly within atoms, these can then induce a dipole on neighbouring atoms causing an attraction (short lived): london forces
pi stacking (pi pi interactions)
non covalent interactions between aromatic rings
3 arrangements of pi stacking
- sandwich
- t shaped
- parallel displaced
evidence of pi staking
- in gas phase and at a low temp benzene forms a dimer and has a bonding energy o 2-3 kcal mol-1
- x ray crystallography gives perpendicular + offset parallel configurations in simple aromatic compounds
micelles & protein folding
- amphiphilic molecules form micelles in water
- head found on outside, tail on inside
- proteins have hydrophobic a.a which fold + form hydrophobic cores
- miming hydrophobic side chains exposed to water is main reason why proteins fold
primary protein structure
sequence of a.a in a polypeptide chain, a.a held together by peptide bonds (ca + amide)
secondary structure
alpha helix and beta pleated sheets held together by hydrogen bonds
tertiary structure
3d shape of proteins. folded in compact globular structures, salt bridges, ionic bonding, h bonding, hydrophobic & hydrophilic interactions, disulphide bridges
quaternary structures
multiple polypeptide structures folded into 1 functional unit