L1: Intro 2 Medical Genetics Flashcards
Why do different tissues exist?
Some genes are switchef on & some genes are switched off, e.g in muscle cells genes related to muscle contraction are activated, while in nerve cells genes responsible for signal transmission are switched on. Although all cells contain the same DNA, this selective expression of genes enables the development of various tissue types, such as muscle, nerve, and skin tissue.
How does mRNA arise?
Arises during process of transcription where info in a gene’s DNA sequence is copied into RNA.
In the nucleus of eukaryotic cells, RNA polymerase binds to the promoter region of a gene, signalling start of transcription.
RNA polymerase moves along the DNA strand, unwinding it and synthesizing a complementary RNA strand from the DNA template. The RNA sequence is built using nucleotides, with adenine (A) in DNA pairing with uracil (U) in RNA, and thymine (T) pairing with adenine (A).
Once RNA polymerase reaches the termination signal on the DNA, transcription stops. The newly formed RNA strand is released.
The pre-mRNA undergoes processing, which includes capping at the 5’ end, polyadenylation (adding a poly-A tail) at the 3’ end, splicing where introns (non-coding regions) are removed, and exons (coding regions) are joined together.
After processing, the mature mRNA leaves the nucleus and enters the cytoplasm, where it is used in translation to produce proteins.
What does the structure of ATP consist of?
Triphosphate (3 high energy phosphate groups), & adenosine (ribose - sugar & adenine - base)
What is a nucleotide & give an example
Basic building block of nucleic acids like DNA & RNA, consists of 3 components which is a nitrogenous base (a purine - adenine or guanine, or a pyrimidine - cytosine or thymine (DNA) or uracil (RNA). A 5-carbon sugar which is either deoxyribose (DNA) or ribose (RNA). 1 or more phosphate groups which link nucleotides together to form the sugar-phosphate backbone of DNA or RNA strands (alternating sugar & phosphate groups form this -charged backbone due to phosphate groups & this is what makes DNA & RNA molecules -charged overall)
Example: ATP
How is DNA compacted into a cell?
The 2 strands of DNA coil into a helix.
DNA wraps around proteins called histones which form structures called nucleosomes.
Nucleosomes coil further into solenoids.
Solenoids form a more compact structure called chromatin (functional state of DNA during most of cell’s life).
During cell division chromatin condenses further to form chromatids (arms of chromosomes)
How many base pairs of DNA are in a single loop of chromatin?
100,000 base pairs of DNA
What are autosomal pairs & what is the 23rd pair of the chromosome referred to?
There are 22 autosomal pairs (non-sex chromosomes) consisting of 1 chromosome inherited from mother & 1 from father & these chromosomes carry genes that determine traits & functions in the body.
23rd pair is the sex-determining chromosome (X or Y)
What is a karyotype?
The complete set of chromosomes in an individual, organized and displayed in a systematic way typically by size, shape, and number.
What are telomeres?
Protective caps at the ends of chromosomes that act as buffer regions made up of repetitive DNA sequences and proteins. Their primary function is to protect the chromosome ends from deterioration or fusion with neighboring chromosomes during cell division. Each time a cell divides, the telomeres shorten, which limits the number of times a cell can divide. When telomeres become too short, the cell either stops dividing or undergoes programmed cell death (apoptosis).
How can specific sections of DNA be visualised?
Fluorescent labelling allows you to know the sequences of certain DNA segments, allowing scientists to create fluorescently labelled molecules that bind to specific areas on the chromosome to be observed under a microscope
What are the 2 types of sex-linked inheritance?
Y-linked inheritance: only males affected as trait is carried on Y chromosome which isn’t present in females. All male offspring of an affected male will be affected
X-linked dominant: can affect both males & females, an individual with 1 copy of the dominant allele will show the trait. Females only need one copy of the dominant allele on one of their X chromosomes to express the trait. This means if a female inherits the dominant allele from either parent, she will be affected. Males have only one X chromosome, so if they inherit the dominant allele on that X chromosome, they will also express the trait.
Since males only pass their X chromosome to daughters, all daughters of an affected male will inherit the dominant trait, but none of his sons will (since sons inherit the Y chromosome from their father).
What are autosomal recessive diseases?
Conditions caused by recessive alleles so trait is only expressed if individual has 2 copies of the recessive allele (1 from each parent). Carriers have only 1 copy which can be passed on
What are the types of genetic diseases?
Chromosomal abnormalities e.g down syndrome (extra copy of chromosome 21/trisomy 21)
Single-gene disorders e.g adult polycystic kidney disease (APKD - affects kidney function caused by mutations in a single gene) cystic fibrosis (affects respiratory & digestive systems caused by mutations in CFTR gene), familial hypercholesterolemia (causes high cholesterol levels leading to cardiovascular disease), hereditary nonpolypodis colorectal cancer (HNPCC - increases risk of colorectal & other cancers), huntington disease (neurogenerstuve disorder caused by mutation in the HTT gene), sickle cell disease (blood disorder caused by mutation in harmoglobin gene), thalassemia (blood disorder caused by mutations affects hameoglobin production)
Multifactorial disorders e.g congenital heart defects, diabetes, certain cancers (influenced by multiple genes & environmental factors)
Mitochondrial disorders e.g diabetes mellitus & deafness (DAD), leber’s hereditary optic neuropathy (LHON) (caused by mutations in mitochondrial DNA affecting cellular energy production)
How can you identify genetic mutations?
Identifying polymorphisms (variations in DNA sequences among individuals)
Mapping phenotype to genotype (linking observable traits (phenotype) to specific genetic variations (genotype)
What technologies are involved in identifying genetic mutations?
Chromosome structure analysis using DNA hybridisation (identifies specific DNA sequences using complementary DNA probes that are labelled & bind to complementary DNA sequences)
Southern blotting using DNA probes & restriction fragment length polymorphism (RFLP - detects variations in DNA sequences by comparing lengths of restriction enzyme-digested DNA fragments)
DNA fingerprinting: involves amplifying & analysing specific DNA regions to generate a unique DNA profile which are typically used in forensic analysis & genetic identification
Genetic sequencing: allows for determination of the precise sequence of nucleotides in DNA to reveal mutations
Polymerase chain reaction (PCR): amplifies specific DNA sequences to analyse them in detail
Chromatography: separates DNA fragments based on size for further analysis
Give an example of technology used in forensic science
DNA fingerprinting involves comparing PCR products from different samples to identify genetic matches commonly user in criminal investigations
What are the types of genetic mutations in cancer cells?
Mutated growth signals: mutations in genes that lead to continuous activation of growth signals causing unchecked cell proliferation
Insensitive to antigrowth signals: ignoring signals that normally inhibit cell growth & so bypassing regulatory mechanisms
Evading apoptosis: mutations that prevent apoptosis allowing damaged cells to survive & proliferate
Enhanced replication: enabling them to divide more frequently
Angiogenesis: stimulate formation of new blood vessels (angiogenesis) to supply nutrients & oxygen supporting tumour growth
Tissue invasion & metastasis: invading surrounding tissues & spread to distant sites (metastasis) allowing cancer to affect multiple areas of the body
How can cancer mutations be identified?
Conducting a biopsy & genetic analysis whereby tumour samples are analysed
What are the different mutations in the CFTR gene that can cause cystic fibrosis?
Class 1: complete lack of CFTR protein production
Class 2: misfolded CFTR protein that can’t reach cell membrane
Class 3: disrupted regulation of CFTR channel which can’t open & close properly
Class 4: alters conductance of CFTR channel affecting its ability to transport chloride ions
Class 5: low levels of CFTR protein due to rapid degradation
What are the major treatments for cystic fibrosis?
Potentiators: helps keep CFTR channel in open state (Class 3)
Correctors: assists CFTR protein in folding correctly & reaching cell membrane (Class 2)
Amplifiers: increases expression levels of CFTR protein (Class 1 & 5)
Combination of these can be used for patients with compound heterozygosity (mutations from both parents)
What techniques can be used to diagnose down syndrome?
Amniocentesis: prenatal test where amniotic fluid is sampled from the amniotic sac surrounding the fetus containing fetal cells that can be analysed
Quantitative fluorescence-polymerase chain reaction (QF-PCR): fluorescent dyes are used to amplify & measure specific DNA regions & can detect extra copy by comparing amount of fluorescent signal from different DNA regions. Normal pattern shows 2 peaks indicating 2 copies of chromosome 21 whereas Trisomy 21 shows 3 peaks therefore 3 copies
What is somatic cell therapy & its disadvantages?
Involves editing a patient’s cells in lab (in vitro) & then reintroducing them into the body to treat the disease e.g beta thalassemia by replacing defective cells with genetically corrected ones
High cost & need for personalised treatment
What is involved in gene replacement therapy?
Inserting a normal gene into a patient’s cells by using vectors such as retroviral vectors (RNA viruses that integrate into the DNA of dividing cells. They can cause issues with integrating near other genes), adenoviral vectors (DNA viruses for non-dividing cells. Don’t integrate into the host genome but can still deliver therapeutic genes), lentiviral vectors (RNA viruses that can work in both dividing & non-dividing cells. Have a more stable integration but are complex to use)
What are the difficulties in gene replacement therapy?
Achieving high level expression of the therapeutic.
Ensuring vectors reach & deliver genes to the target tissue efficiently.