Introduction To Virology Flashcards

1
Q

Virion

A

Non-living particle composed of genetic material and capsid outside the host cell and capable of becoming active (infective) in living host cells

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2
Q

Viruses

A

Are acellularsubmicroscopic organisms made up of genetic materialsurrounded by a protein coat (capsid) capable of becoming active in living cell

Viruses may have an extra outer covering of the capsid (envalop) or may not (naked)

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3
Q

Viruses as non-living

A

Viruses first exist as non-living particles in the environment referred to as Virion.

  • A virionfunctions to protect the genome inside it and delivers it into a suitable host cells for replication.
  • Viruses are acellularorganisms (no true cell). That is, they lack true cell organelles such as ribosomes, mitochondria, golgibodies, endoplasmic reticulum, e.t.c.
  • Viruses are completely dependent on host cell for activation and replicatio
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4
Q

Viruses as living things

A

•Every virus has a genome (code of life) which is activated upon entry into a host cell and begins the process of
replication.

•Although, viruses lack protein synthesizing machinery, they contain structures needed to evade host cells and manipulate the cell replicating machinery into producing more copies of the virus rather than normal cellular proteins.

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5
Q

Size and Scale of Viruses

A
  • Viruses are the smallest living organism inside a host cell capable of replication.
  • Usually measured in nanometers (nm)1 nm = 10-9 metres
  • Viruses range in size from 20nm to few millimetres. Approximately 1/1000thof a bacteria.
  • Visualized mainly with the use of an electron microscope
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6
Q

Viruses as Ubiquitous

A

; can be found everywhere on earth in soil, water, and air in reasonable mount.

•Scientist have observed that the intensity of studying a living species is directly proportional to the discovery of new viral species.

Implies that the more we study a species, the more virus we may find

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7
Q

Viruses as intracellular parasites

what 3 things are they dependent on the host for?

A
  • They manipulate host cell genetic machinery for the synthesis of new viral genome through a process called Replication.
  • As parasites, they are dependent on host for the following:
  1. building blocks (e.g. Amino acids and nucleosides)
  2. machinery for protein synthesis such as ribosomes
  3. energy (ATP) for DNA or RNA synthesis.

•Viruses can modify host cells to produce proteins that are used as membrane structure or dampen immune response against i

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8
Q

Genetic code of Viruses

A

A virus has Genewhich is either DNA or RNA. Different from cellular organisms whose genetic unit is a DNA.

•Viruses can be divided into four groups of based on the number of strand in its genome.

  1. double-stranded DNA (dsDNA)
  2. single-stranded DNA (ssDNA)
  3. single-stranded RNA (ssRNA)
  4. double-stranded RNA (dsRNA)Note that groups 2-4 are unique to viruse
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9
Q

Satellite Viruses

A

. Certain viruses are referred to as Satelliteviruses, because they require the host to be infected with a second strain of virus known as helpervirus before becoming infective.

•Asatellite virus lacks one or more functions needed for replication which is provided by the helper virus.

•Examples:
1.Hepatitis delta virus (ssRNA) in an animal host needs a Hepatitis B virus (dsDNA) to replicate.

  1. Enterobacteriaphage P4 (dsDNA) in a bacterium needs an Enterobacteriaphage P2 (dsDNA) to replicate.
  2. The satellite tobacco necrosis virus (ssRNA) in plant needs a tobacco necrosis virus (ssRNA) to replicate.
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10
Q

Viruses as agents of economic loss

A
  • Outbreak of virus infection such as SAR-COV-2 have resulted in huge economic losses worldwide worth billions of dollars.
  • In the fermentation industry, bacteriophages can kill the lactic acid bacteria that triggers the production of yogurt, cheese and other dairy products.
  • Also, bacteriophages can disrupt the industrial production of amino acid by killing the Corynebacteriumspecies involved in the fermentation process
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11
Q

Viruses in Biotech

A

Knowledge about the biology of viruses have helped man develop various molecules to help improve and sustain lives as follows:

  • Pioneer in molecular biology discoveries: In 1952, Alfred Hershey and Martha Chase, employed phage T2 and E. coli to show concrete evidence that the genetic material is made up of DNA.
  • Vectors for gene in protein production: Some baculovirusesand adenoviruses are used as gene carriers into plant or animal cells for mass protein production.
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12
Q

Viruses as Vectors for gene for treatment of genetic disease

A

es: Retroviruses have been employed as gene carriers to treat Severe Combined Immunodeficiency genetic disease in childre

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13
Q

Viruses as sources of enzymes

A

s: Certain virus enzymes have been employed in molecular biology. E.g. Phage RNA polymerases have been employed in the synthesis of RNA while reverse transcriptasesfrom retroviruses have been used in the DNA synthesis

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14
Q

Viruses for characterization of bacteria

A

: Certain groups of bacteria (Salmonellaspecies) have been categorized into strains based on the type of phage present and have been used in the identification of bacteria during an outbreak.

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15
Q

Viral Pesticides

A

: baculoviruseshave been employed as bio-control agent against some insect pest

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16
Q

Viral anti-bacterials

A

s: before the invention of antibiotics, scientist have employed phages for the control of bacte

17
Q

Viruses as anti-cancer agents

A

s: strains of genetically-modified viruses such as vacciniavirus and herpes simplex virus have been employed to destroy cancer cells in hos

18
Q

Virus structure

A
  • Viruses are non-living particles outside a host cell called virions.
  • Virionshouse the genetic material and functions as a gene transfer system.
  • Viruses are made up of 2 key components:
  1. Capsid: A layer of protein covering the genetic material.
  2. Genetic material: Either a DNA or RNA, but never both.Other components varies between viruses:
  3. Envelop:May have an extra outer covering of the capsid called an envelop.
  4. Nucleocapsid: Made up of capsid + Genetic Material (for ssRNA viruses)

Matrix: Layer between the nucleocapsid and the envalope (If present)

Note: Viruses without capsid are referred to as nake

19
Q

Functions of the Capsid

A
  • A capsid protects the genetic component of a virus from inactivation.
  • Another function is to recognize, attach and gain entry into host cells for genetic replication.
  • Capsid ensures that the virus is transported to the right host cell where the genome can be transcribed and replicated.
  • A capsid can alters its conformation and ensures the release of the genetic material into host cel
20
Q

Construction of the capsid

A
  • Capsids are made up of many molecules of the same or two or more proteins.
  • Molecules making up a capsid are asymmetrical but are arranged to form symmetrical structures.
  • Symmetrical capsids entails that the appearance looks unchanged if rotated at several angles.
  • Virus capsid are Polyhedrons (exist in many forms and shapes like rod, spiral, spike, helical).
21
Q

Capsid Symmetry// Classes of Capsids

4x

A

Capsid symmetry

•Four major shapes of virus can be distinguished:

  1. Helical shape
  2. Icosahedral shape
  3. Rod shaped
  4. Complex shap
22
Q

Examples of Viruses with Helical shaped capsids

A

: ssRNAspiral or coiled shaped viruses. E.g. Tobacco Mosaic virus (TMV), influenza viruses, measles, some bacteriophages

23
Q

Examples of VIruses with rod shaped capsids

A

s: Tobacco rattle virus (2 unequal RNAs).

24
Q

Examples of Viruses with filamentous capsids

A

Some bacteriophages

The ones that have either ssDNAor dsDNA

25
Q

Examples of Viruses with icosahedral capsids

A

e: Polyhedron shape. E.g. herpes simplex virus, poliovirus, parvovirus

26
Q

Examples of Viruses with complex capsids

A

smallpox and bacteriophages

27
Q

Virus capsid with helical symmetry

A

Virus capsid with helical symmetry

Helical shaped capsids are found in many ssRNAviruses.

The RNA is coiled in the shape of an helix and many copies of the same protein are arranged around the coil.

28
Q

Capsids with rod or conical shape

examples

A
  • The capsid is made up of basic proteins and surrounds the virus genome in a rod or conical form.
  • Examples are the baculovirusesand HIV-1 both of which has an enveloped virions
29
Q

Virus capsid with icosahedral symmetry

A
  • Viruses with icosahedral symmetry consist of a shell made from protein molecules and arranged in the form of a scaffold to form a polyhedron.
  • The virus genome have less contact with the capsid proteins compared to helical-shaped viruses
  • A virus icosahedron has five-, three, and two-fold axis of rotational symmet
30
Q

Virus capsomeres

A
  • Are the building blocks of a virus capsid arranged from discrete structures.
  • Each capsomereis usually made up of many identical protein molecules.
  • For example, the capsids of the papilovirusesare built from 72 identical capsomeres.
  • Note that the capsids of some viruses can also be constructed from more than one type of capsomere; E.g. Herpes viruses and Adenoviruses
31
Q

Virion envelope (membranes)

A
  • Viruses may have an extra layer of protection of the capsid called an Envelop.
  • Envelop is a lipid-protein structure which surrounds the capsid and the genetic material (nucleic acid) inside known as a Nucleocapsid.
  • Although, the envelop may be positioned in the capsid for some viruses.
  • Majority of the enveloped viruses are mostly spherical or nearly spherical
32
Q

Virion envelope (membranes)

examples

A

•Many viruses infecting animals possess envelops with helical configuration such a the influenza virus, while a good number have icosahedral shape (E.g. Herpes viruses)

.•Fewer enveloped viruses infect plants (potato yellow dwarf virus), while infection is rear among prokaryotes [Pseudomonas phage φ(Phi) 6]

33
Q

Complex viruses

A

many components:

Icosahedral deag (with DNA)

internal (cylindrical core) within in head containng the dnn (coiled around it)

connector that is attached to the internal core and contains a short tail with six firbres

34
Q

Summary of Virus architecture

A

see slides for picture