Intro to pathology Flashcards

1
Q

Pathology

A

Disturbance of hemostasis by cell death

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2
Q

Adaption to stress

A

increase in the size (Hypertrophy)
number (Hyperplasia) of individual cells

cell atrophy-cell volume diminishes as cytoplasm digested by proteosome and autophagy where lysososymes fuse and digest

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3
Q

Apoptosis

A

Controlled cell death (metabolism)
Cells shrink
membranes bleb and bud
Critical proteins cleaved by caspases
Expose signals for phagocytosis on surface

Intrinsic-caspase
Extrinsic-T cell Fas ligand

Development needs apoptosis, spaces between hands

Hayflick limit (telomere) not apoptosis

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4
Q

Necrosis

A

loss of cell volume
cellular swelling and rupture of internal and plasma membranes occurs
Intracellular contents leak
components are chemotactic for neutrophils
acute inflammatory reaction
Poorly controlled, spreads

Caused by something outside cell

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5
Q

Oxidative stress

A

reactive oxygen species (ROS),(NO), free radicals with unpaired electron
Made naturally by oxidative enzymes, also by radiation and xenobitoics

Damage DNA by strand scission
Disrupt protein folding
Damage fatty acid membranes

Used by neutrophils and macrophages

Made after periods of hypoxia, repurfusion injury

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6
Q

Impaired energy homeostasis

A

Loss of control of energy production due to e.g lack of oxygen
Na+/K+ pump stops, Na+ accumulates, water in, cell swells
Glycolysis increases, Lactic acid up, lower pH

Influx of Ca+ so increased activity of intracellular proteases, phospolipases,
endonucleases and ATPases

Ribosome detachment and loss of protein synthesis occurs

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7
Q

Heat shock

A

heat shock factors (HSFs), normally bound by heat schock proteins (hsp) and kept inactive
When heated, proteins unfold, hsp bind, HSF-1 becomes free to become a trimer and activate transcription of hsp and stops transcription of other proteins
Preconditioning

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8
Q

The unfolded protein response

A

cell protein concentration in the ER can reach 100mg/ml,
Proteins start to aggregate at too high conc

UPR activates signalling
cascades that increase synthesis of folding chaperones, enhance proteasomal protein
degradation by ubiquitin and slow down protein translation
Part of the response to injury

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9
Q

The stress kinase pathways

A

osmotic stress, oxidative stress, heat, UV,
DNA cleavage

activate heterodimeric transcription factors (e.g. AP1)

Jun N-terminal Kinase (JNK)/stress-activated protein kinase pathway (SAPK)
pathway

P38 kinase pathway

Pathways make AP-1, which causes inflammation, apoptosis, repair, adaption etc

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10
Q

Intracellular and extracellular infection

A

Extracellular- COmplement
Phagocytosis, Antibodies
anitmocorbials, antibodies
IgA

Intracellualr, viruses mainly chlamydia,Protozoa
NK cells, cytotoxic T cell, they also activate macrophages

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11
Q

Innate and Adaptive Immunity

A

Innate (natural) immunity.
This is in place before infection occurs and is poised to react immediately.

Adaptive (acquired) immunity.
This system takes time to develop and helps deal with infections that the innate system may
be unable to eliminate.
The adaptive response is highly specific, tailored to fit each particular pathogen
4-5 days

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12
Q

acute inflammatory response

A

Response to injury
eliminate the initial cause of cell injury, to remove damaged
(necrotic) tissue
initiate
repair of the damage tissue

PAMPs recognised by PRR on macrophages/mast cells,
Chemicals like histamine released, causes vasodilatation so neutrophils can enter

Calour (heat)- from increased blood flow
Dolor (pain)- stimulation of nerve endings,protsoglandin
Rubor (redness)- increased circulation/vasodilation
Tumour (swelling)- increased fluid in the tissues, increased permeability
tight junctions disrupted

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13
Q

Epithelial barriers

A

Tight junctions between squamous epithelial cells of the skin and mucosal glandular epithelia of the gastrointestinal and respiratory tract prevent access to tissues.
Additional modifications such as cilia (respiratory tract) and keratin (skin) function as
added barriers.

Secretions
* Mucous covers all glandular surface
* Stomach acid (low pH)
* Antimicrobial peptides (defensins, cathelicidins) damage microbe membranes
* Enzymes in tears and saliva (lysozyme) or stomach (pepsin)

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14
Q

Phagocytic/Cellular Barriers: Cells of the immune system

A

leukocytes made in bone marrow by hematopoiesis

Hematopoietic stem cell
lymphoid precursor- B cells and NK/T cell precursor

Myeloid precursor-
monocyte- macrophage/dendrite

granulocyte precursor- neutrophil, eosinophil, baso
mast cells unknown precurse

Megakaryocyte/erthroid precursor

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15
Q

Neutrophils

A

most abundant, not in tissue

Use chemotaxis with C5a and fMLF

Phagocytose

Short half life

Degranulate releasing antibacterial proteins

Extrude their DNA forming neutrophil extracellular traps
(NETs) to trap microbes (PUS)

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16
Q

Macrophages

A

Large phagocytic cells, in tissue

M1-macrophages secrete
cytokines and pro-inflammatory mediators that stimulate the acute inflammatory response

M2 or alternatively activated macrophages are associated with tissue repair and parasite
killing and expulsion

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17
Q

Mast Cells

A

In tissue

Cause inflammation quickly with histamine in secretory vesicles
Histamine acts on vascular endothelium, vasodilatation

degranulate within seconds

Triggered by allergens,IgE
PAMPs,DAMPs,
complement

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18
Q

Eosinophils

A

Parasite/worm defence
degranulates
pink biolabel

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19
Q

Basophil

A

Anti parasitic
Very little in blood
Release IL-4 which promotes TH2 response which delas with helminths

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20
Q

Dendritic cells

A

Bridge between innate and adaptive
Recognise pathogens and take them up to lymph nodes to activate T cells

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21
Q

Patter recogntition receptor

A

Stimulate phagocytosis
GUide cells
produce effectors

Toll-like recptor, TLR4-LPS
important for gram-ve detection
NOD-recognises multiple, peptidoglycan from bacteria
C-type lectin-fungal
RIG-I-like-viral RNA

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22
Q

PAMP
Pattern associated molecular patter

A

Essential for an organism, conserved
Should always be present
Not in host

Bacteria- + lopteichoic acid LTA
-ve lipopolysaccharide LPS
peptidoglycan PGN
DNA
flagellin
lipoproteins

Virus
COat protein
dsRNA

Parasite
GP1 anchor

Yeast
zymosan
beta-glucan

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23
Q

DAMP

A

Released during necrosis
ATP
DNA
RNA(less stable so less present)
CHromatin proteins
Cholesterol crystals

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24
Q

NK cells

A

Natural Killer
Healthy cells inhibitory signals from MHC class 1

MHC class 1 presents molecules inside cell as peptides, if infected, pathogen presented, death so

Some virus remove MHC class 1 no inhibitory signal, Missing self response

When infected express activating ligands, Induced self response

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25
Viral infected cells
PRoduce IFN alpha IFN beta Causes resistance to viral replication Increase expression of ligands recognised by NK Activate NK cells
26
NK effector
Release perforin to form pores in membrane Releas granzymes to induce apoptosis Antibody Dependent Cell Cytotoxicity (ADCC) Recognise Fc part of antibodies, needs multiple antibodies Macrophage activation Make CXCL8, IL-12 & IL-15 which activates NK cells make IFNgamma which increase killing capactity of macrohphage
27
Innate Lymphoid Cells
amplify signals produced during innate recognition ILC1s protect against viruses and intracellular pathogens ILC2s assist mucosal and barrier immunity against parasite and helminths infection ILC3s protect against extracellular bacteria and fungi
28
Cytokines
Secreted soluble proteins BInd to recptors to conteol activity of immune cells Autocrine,paracrine,endocrin Redundancy, several different cytokines may have the same function * Pleiotropism, a single cytokine may have a variety of different effects * Antagonism, one cytokine blocks the action of another * Synergy, multiple cytokines work together to achieve an effect that is greater than the additive effect of each alone Use JAK/STAT pathway Interluekins INterferons TNF-Tumour necrosis factor
29
Acute phase proteins
IL-6 stimulates hepatocytes to release acute phase proteins C-reactive protein (opsonin and complement activation) and Fibrinogen (fibrin clot formation) Denfensins disrupt microbe membranes Pentraxins bind to pathogens and phagocytes liek antibody
30
Arachidonic acid metabolites
potent inflammatory mediators such as prostaglandins and leukotrienes Prostoglandins vascular permeability vascular dilation neutrophil chemotaxis leukotrienes back up for histamine, longer stronger response bronchial smooth muscle contraction neutrophil chemotaxis Slow Reacting Substance of Anaphylaxis (SRS-A)
31
Chemokines
cells move towrads it down gradient CXCL8
32
Kinin system made in liver
Bradykinin which increases vascular permeability, vasodilatation Activates complement
33
Inflammasome
Nod like recpeote NLRP3 forms inflammsome Recognise peptideoglycan, bacterial DNA, ATP, toxins, ds-RNA induce inflammation by causing caspase-1 to activate IL-1b
34
Inflammatory Exudate
dilate blood vessels to increase blood flow. * increase permeability of the vessel wall to allow a protein rich fluid into the tissues. A fibrin web forms and complement and CRP are recruited. Recruit neutrophils and others like monocytes-macrophages lymphocyte, eosinophil
35
endogenous pyrogens
Induce fever IL-1beta TNF-alpha IL-6 Secreted by activated macrophages
36
Recruitment of leukocytes
Selectins like P/E selectin bind to glycoprotein ligands present on the neutrophil integrin family adhesion molecules (LFA-1) on cell bind Intercellular Adhesion Molecules) on the endothelium tightly Diapedesis, squeeze through the gaps between endothelial cells (extravasation) elastase to degrade membrane Migration using CXCL8 grad LFA-1 deficiency stops neutrophil recruitment Leukocyte adhesion deficiency (LAD) Monocytes are recruited later because the endothelial adhesion molecule (VCAM-1) is made slower
37
Sepsis
Sepsis occurs when pathogens enter the blood stream. TNF=alpha secreted by macrophages vasodilation and movement of fluid into the tissues causes loss of blood pressure Septic shock Also triggers clotting in small vessels disseminated intravascular coagulation)
38
Stopping Inflammation
Short half lives and degrade quickly When apoptic neutrophils engulfed by macrophage, anti-inflammatory lipoxin made Makes anti inflammatory cytokines such as IL-10 and TGF-b to stop inflam
39
Repair And Healing: Granulation Tissue
repair is called granulation tissue recruitment of endothelial cells to form new blood vessels and fibroblasts to lay down extracellular matrix (ECM) Macrophages phagocytose debris kill microbes with ROS recruit fibroblasts FGF recruit endothelial cells VEGF secrete metalloproteinases to allow remodelling of ECM
40
Angiogenesis
stimulated by cytokines produced by macrophages (e.g. VEGF). drives preexisting vessels to send out capillary sprouts into the area of damage.
41
Chronic Inflammation
causative agent is endogenous: e.g. stomach acid (peptic ulcer) non-degradable: e.g. silica evade host defences: e.g. tuberculosis autoimmunity): e.g. rheumatoid arthritis
42
granuloma
multinucleate giant cell area of necrosis Surrounded by T cells walled off as can't remove infectous agent
43
Complement
Activation of inflammation Opsonisation of microbes Lysis of target cells C3 has an internal thioester bond. When cleaved to C3a and C3b, C3b can bind to phagocyte surfaces C3a anaphylatoxin and stimulates local inflammation by activating mast cells
44
Complement Receptors (CRs)
CR1 binds directly to C3b and once C5a binds trigger phagocytosis C3b is an opsonin
45
Alternate pathway of complement activation
C3 spontaneously reacts with H20 C3H20 bind factor B and factor D cleaves B into Ba which leaves and Bb C3H20Bb fluid phase C3 convertase Cleaves C3 into C3b and C3a similarly surface bound C3b bind factor B and D so C3bBb alternative pathway C3 convertase cleaves even more C3 so more C3b binds
46
membrane attack complex
C3bBb binds C3b to form (C3b)2Bb the alternative C5 convertase cleaves C5 into C5a and C5b C5b binds C6 which binds C7 C7 inserts into membrane C8 binds and causes polymerisation of C9 to form a membrane pore
47
The Lectin pathway of complement activation
Mannose binding lectin (MBL) is a PRR that binds f mannose residues that are found on microbial surfaces MBL is bound to MASP 1 and 2 MBL-associated serine protease which when MBL binds cleaves C4 into C4b and C4a C4b binds to pathogen surface C2 binds and is cleaved into C2a/b, C2a binds to C4b C4bC2a, the Classical C3 Convertase cleaves C3
48
The Classical pathway of complement activation
antibody or C-reactive protein (CRP) made in liver due to Il-6 release by macrophage C1q can bind multiple antibodies or CRP C1s then cleaves C4 so C4b binds then like lectin C2 binds, C2a remains forming C4bC2a which cleaves C3 C4bC2aC3b can form a classical pathway C5 convertase.
49
Regulatory proteins control complement activity
Short half life Properdin (Factor P) stabilises C3bBb and the C5 convertase complex Factor I degrades C3b and C4b Membrane cofactor protein (MCP) on host cells breaks down C3 convertases Also cleaves C3b/C4b with factor I Factor H attaches to sialic acid present on host membranes but not bacteria and causes dissociation of C3bBb and cleavage by I Decay accelerating factor (DAF) dissociates C3 convertases Protectin stops C9 recruitment
50
Complement deficiencies
C1, C2, C4 Immune-complex disease, infection C3 Infection with encapsulated bacteria as C3 important opsonin C5-C9 Susceptibility to Neisseria infections as complement mediated lysis is best defence Factor D,Properdin Susceptibility to pyogenic bactera Factor I, Factor H uncontrolled AP activation resulting in C3 depletion, Susceptibility to infection with pyogenic bacteria DAF, Protectin Autoimmune-like conditions as red blood cells are lysed
51
Complement evasion strategies
Staphylococcus aureus. polysaccharide capsule Staphylococcus Complement Inhibitor (SCIN) on surface to inactivate C3 secretes proteins that bind or degrade and inactivate C3 protein A binds the Fc region of IgG blocking complement recruitment and activation. Clumping factor A recruits factor I to the bacterial surface Chemotaxis Inhibitory Protein blocks the C5a chemotactic receptor on neutrophils limiting recruitment to sites of infection.
52
Antibodies
Bind small epitopes on antigens variable regions that interact with antigen COnstant region that recurits effector Neutralization- binding toxin to stop it from binding Opsonisation- IgG bind to Fcg recptors on macrophages and neutrophil to enchance phagocytosis Complement activation classical pathway by C1q
53
T cell
cytotoxic T cells CD8 MHC class 1 kill virus/tumour cells T helper CD4 MHC class II Activate B cells, macrophages and cytotoxic T cells MHC class II found on professional antigen presenters like dendritic, macrophage, b cells
54
MHC
MHC I oresents peptides from inside of cell MHC II presents peptides from molcules that enter via the endocytic pathway. Survey external environ
55
Activating naive T cells
dendritic cell PRR binds PAMP becomes professional antigen presenting cell (pAPC) Presents on MHC I and II Signal 1 from recognition of MHC and peptide Need costimulation from B7 on dendrite to bind CD28 on T cell, Both signal needed Cytokines can change which T helper cell Cytotoxic T cells need both signals but also somtimes need TH1 to make IL-2
56
T helper cell
TH1 cells help activate macrophages IL-12 and IFN-g TH2 helps parasite infections IL-4 TH17 cells help promote neutrophil control of extracellular bacterial and fungal infections .IL-6, TGF-b and IL-23 TFH cells help B cells become activated IL-6 and IL-21 Treg cells suppress the activity of other effector T-cell populations TGF-b
57
Lymph node
dendritic cells enter and activate T cell follicular dendritic cells (FDCs) trap peptide fro long times so B cell with highest affinity matures Affinity maturation
58
Antibody structure
pairs of heavy and light chains held together by covalent (disulphide bridges) Variable region and contstant region IgA, IgD, IgE, IgG and IgM depends on heavy constant region Has hinge to be flexible antigen binding site is formed by interaction between heavy and light chain variable domains complementarity determining regions with CDR3 most variable
59
Generation of antibody diversity
VDJ- variable, diversity, junctional gene segment DJ first the V joins DJ for heavy chain 2 copies of VDj from parents so 2 tries for rearrangement Light chains no D, diversity segment only VJ Make K chain first then lamda so 4 tries RAG1 and RAG2 recombinase Further junctional diversity by addtition or loss of nucleotides by P or N addition
60
Somatic hypermutation
deamination of cytosine to uracil by the enzyme Activation Induced (Cytidine) Deaminase or AID to add point mutation Antibodies with increased affinity are selected by affinity maturation
61
Isotype switching
Can swap from IgM and IgD to IgG, IgA or IgE
62
FC receptors
low and high affinity and bind single or mutliple to give different levels of antigen senstivity
63
Antibody functions
Can cause degranulation of eosinophils MAst cells have prebound antiobodies bind to antigen to cause degranulation IgA in gut protects mucosla surfaces, in breast milk IgG moves across placenta Antibody immune complexes can bind BCR and terminate them to stop response
64
Affinity and avidity
Affinity is the strength of 1 anitbody binding site Antibodies have multiple binding sites IgG has 10 so though low affinity high avidity
65
MHC
Class I all cells except red blood cells alpha 1 and 2 Beta 1 and 2 alpha 1, beta 1 peptide binding Class II Alpha 1,2,3 Beta 2 recognised by CD4 alpha 1,2 peptide binding Bind a broad range of peptides
66
Human Leukocyte Antigens (HLA)
Human MHC 3 copies A,B,C from each parent so 6 total High polymorphism Inherited together and codominantly expressed. Variability in peptide binding and T cell receptor binding part Depedning on the amino acid in important anchor position in the peptide binding region changes what is bound
67
MHC polymorphism is pathogen driven
Chicken only 1 MHC either fastidious binds few peptides or promiscuous binds many After infection promiscuous favoured
68
MHC class I antigen processing pathway
Protein into peptide by proteosome Transporter associated with Antigen Processing (TAP) sends peptide into ER Loaded onto MHC class I and sent by golgi to surface
69
MHC class II antigen processing pathway
class II will bind peptide in cell when in ER so to avoid this it has an invariant chain to block peptide groove class II is sen into a vesicle where it fuses with an endosome containing antigens and is loaded with the help of HLA-DM