intro to mass spec Flashcards
Mass spectrum
a histogram of signals representing the distribution of separate masses in a sample
abundance/intensity on the y-axis and mass-to-charge ratio (m/z) on the x-axis
MS basic principles
technique performing “mass selective separation” i.e. the ability to separate something by their molecular weight. First must ionise
Ionisation
process of producing an ion from your analyse (M). Either a molecular ion M+. or an adduct ion [M+X]+ (where X=cation)
M–> M+’ + e-
M + X+ –> [M+X]+
five stages of MS
sample inlet ion source - atmospheric/vacuum pressure mass analyser - high vacuum ion detector - high vacuum data collection
analyte
the thing that is being analysed
cation
positively charge ion
anion
negatively charged ion
gas-phase chemistry
MS analyses gas-phase ions in a high vacuum
means that many species are stable for long enough to contribute to mass spectral studies
e.g CH5+ is stable but highly reactive
unit of mass.
Dalton
1 D = 1.66E-27 kg
isotopic mass
mass calculated from the sum of the most abundant isotopes making ip the molecule
average mass
mass calculated from th average atomic masses of the elements making up th molecule
often used when working out amounts of reactants to use in a reaction or when working out yields
nominal mass
the mass calculated from the sum of the most abundant isotopes making up a molecule rounded to the nearest whole number
convenient for disussions
isobars
are molecules with the same nominal mass but different formulae and therefore isotopic mass
accurate mass
experimentally determined mass performed in a way to determine or confirm the molecular formula
error (ppm) = ((difference in accurate mass and theoretical isotopic mass) / (theoretical mass) ) * 1E6
accuracy
for an experimental measurement is the ‘degree of closeness’ to the actual/reference value
precision
degree to which repeated measurements remain unchanged under the same conditions
high accuracy, low precision
improve precision by averaging data
low accuracy, high precision
systematic error - recalibrate
isotopes
atoms of the same element with differing numbers of neutrons
calculation of no. carols
maximum no. carbons = Nc
Nc = (Y/X)*(100/1.1) or Y/1.1 (assumes scaled to 100% axis)
Y = intensity of [M+1]+
X = intensity of M+
Nitrogen rule
organic compounds containing exclusively H, C, N, O, S, Is, P and the halogens can have either:
- an odd nominal mass that indicates an odd number of N atoms or
- an even nominal mass that indicates an even number of N atoms (or none)
General principle when attempting to identify unknown
Resolution
ability of a mass spectrometer to separate ions that are close in mass .
two overlapping peaks considered fully resolved if the point of overlap is less than 10% of the intensity
R10% = (left peak m/z )/ (difference in m/z between top of peaks)
High resolution
allows the separation of isobaric ions - ions with the same nominal mass, bu different isotope composition and therefore accurate mass
Required to determine the accurate mass of an ion - i.e. to prevent other isotopic compositions from skewing the measured mass
Sensitivity
a measure of signal strength or ion intensity when analysing a fixed amount of sample