Intro to DNA Flashcards

Structure, how we know it contains genetic information, providing the mechanism for heredity, genome and chromosomes.

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1
Q

How can we combat climate change?

A

Increase carbon storage in plants.

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2
Q

How can we help the aging population?

A

Understanding the molecular basis of healthy aging.

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3
Q

How can we help food poverty?

A

Grow more resilient and nutritious crops.

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4
Q

How can we help with infection and disease?

A

Understanding and treating pathogenic/genetic diseases e.g. cancer.

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5
Q

How can we help biodiversity?

A

Monitoring the size and fitness of a population.

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6
Q

What has been used for 2000 years by Chinese herbal medicine practitioners?

A

Artemisia annua / sweet wormwood / ginghao

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7
Q

In 1956, what did Li Shizhen (herbalist) recommend?

A

Patients with a fever soak wormwood in water, squeeze out the juice and drink it all.

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8
Q

In 1960-70, what did Tu Youyou discover and isolate?

A

Qinghaosu/Artemisinin = active anti-malarial compound from sweet wormwood.

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9
Q

What caused Artemisinin production to reduce from 1.5 years to 3 months?

A

When synthesised from yeast rather than extracted.

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10
Q

In 1868, what did Friedrich Miescher do?

A

Isolated ‘nuclein’ from white blood cells present in human pus using a crude nuclear fraction = later renamed nucelic acid.

(Crude nuclear fraction = portion of WBCs containing the nucleus and its associated components e.g. nuclear envelope and nucleolus).

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11
Q

Give the characteristics ‘nuclein’ was found to have

A

Had high molecular weight, was acidic and contained appreciable amounts of phosphorous.

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12
Q

Other than human pus, how else is ‘nuclein’ obtained?

A

From nuclei of other animal tissues.
From yeast cells.

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13
Q

In 1944, what did Avery, Macleod and McCarty perform?

A

Streptococcus pneumoniae transformation experiments.

The researchers prepared an extract from the disease-causing S-strain of pneumococci and showed that the “transforming principle” that would permanently change the harmless R-strain pneumococci into the pathogenic S-strain is DNA.

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14
Q

Why were the Streptococcus pneumoniae transformation experiments significant?

A

This was the first evidence DNA could serve as genetic material.

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15
Q

Describe how the researchers showed the molecule that carries heritable ‘transforming principle’ is DNA.

A

S-strain cells extract prepared and fractioned into RNA, protein, DNA, lipid and carbohydrate.
Molecules then tested for ability to transform R-strain cells.

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16
Q

What biological materials are bacteriophages (viruses that infect bacteria) made from?

A

Only DNA and protein.

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17
Q

Describe the experiment Alfred Hershey and Martha Chase did in 1953?

A

Labelled DNA with radioactive isotope P(32) and protein with S(35).
Viruses allowed to infect E.coli, viral heads sheared off bacteria, centrifuge.

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18
Q

What was the result?

A

Only P(32) present in infected bacterial cells and passed onto bacteriophage progeny (offspring).

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19
Q

Give 5 requirements of DNA.

A

Stable overtime for storage.
Able to be faithfully replicated.
Able to control expression of traits/encode the sequence of proteins.
Able to direct cellular processes.
Able to change in a controlled way (evolution).

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20
Q

In 1953, what did Rosalind Franklin do and conclude?

A

Used x-ray crystallography to study structure of DNA, concluding its a double helix.

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21
Q

In 1953 what did James Watson and Francis Crick publish?

A

A paper for describing a model for the structure of DNA.
Concluded complementary bases A,T,C,G pair along the centre of the double helix to hold the two DNA strands together.

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22
Q

In 2007, why was Watson suspended from Cold Spring Harbour Laboratory?

A

For problematic statements regarding eugenics, race, sexuality, gender and intelligence.

Eugenics - arrange reproduction within a human population to increase the occurrence of heritable characteristics regarded as desirable.

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23
Q

Who is the professor of Human Immunogenetics and founding director of the National Human Genome Center at Howard University?

A

Dr. Georgia Dunston - explores relationship between immune system and genetics.

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24
Q

What did she examine?

A

The genetic basis for the difference in how Type 2 diabetes manifests in West African populations compared to those from Finland.

(Understanding genetic variations relevant to the immune system).

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25
Q

How did her process of acquiring, testing and analysing samples from African populations help?

A

Answered questions about genetic variations across human populations.
Added African representation to the Human Genome Project (HGP).

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26
Q

What is genetics?

A

The study of the structure and function of genes, genetic variation and heredity in organisms.

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27
Q

What elements does the DNA double helix and sugar phosphate backbone contain?

A

N, P, O, C, H.

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28
Q

What is the orientation of the helix?

A

Clockwise/right-handed.

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29
Q

Describe what a nucleotide is?

A

Ester bond between phosphate and deoxyribose.
(Phosphodiester bonds in sugar-phosphate backbone).
Glycosidic bond between base and deoxyribose.

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30
Q

What is the difference between pyrimidines and purines?

A

Pyrimidines are six-membered single ring structures and purines are nine-membered, double ring structures.

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31
Q

List the purines and how to tell the difference between their chemical structure.

A

Adenine and guanine.
Adenine = no oxygen
Guanine = oxygen

32
Q

List the pyrimidines and how to tell the difference between their chemical structure.

A

Cytosine, Thymine (and Uracil for RNA).
Cytosine = NH2 group and 1 oxygen
Thymine = CH3 group and 2 oxygens
(Uracil = 2 oxygens)

33
Q

How long (metres) is the DNA in a human diploid cell? How many base pairs is this?

A

2m
6 x 10^9 base pairs

34
Q

What is the diameter of the nucleus?

A

10 micrometres

35
Q

How many base pairs in the human mitochondrial genome?

A

1.5 x 10^4 bp

36
Q

How do you label carbon atoms in the deoxyribose ring?

A

Anticlockwise from the carbon attached to the base.

37
Q

Describe the directionality of each DNA strand.

A

Strands are antiparallel.
One strand has 5’ to 3’ polarities (due to carbon 5 being on the top and 3 being on the bottom) and the other strand has 3’ to 5’ polarities.

38
Q

Sugar + Base + Deoxyribose =

A

Nucleotide

39
Q

Deoxyribose + …

A

40
Q

Adenine =

A

Deoxyadenosine

41
Q

Thymine =

A

Deoxythymidine

42
Q

Cytosine =

A

Deoxycytidine

43
Q

Guanine =

A

Deoxyguanosine

44
Q

How are the two polynucleotide strands held?

A

By hydrogen bonds between complementary planar base pairs.

3 hydrogen bonds between C and G and 2 between A and T.

45
Q

How wide is the helix?

A

20 angstrom

1 angstrom = 1 x 10^-10m

46
Q

How long is each base pair?

A

0.34nm

1 nanometre = 1 x 10^-9m

47
Q

What can DNA be natured by?

A

Heat - due to many hydrogen bonds along helix.

48
Q

How do the bases pair?

A

A large purine with a small pyrimidine.

49
Q

How many base pairs are there per turn?

A

10

50
Q

Why are there minor and major grooves?

A

Due to the orientation of the way the bases join together.

51
Q

What are ‘stacking interactions’?

A

Hydrophobic interactions between adjacent bases.

52
Q

What reacts with a dipole of water?

A

Charged phosphate groups on the outside.

53
Q

In the cell, how is the negative charge of phosphate masked?

A

Partially by Mg2+

54
Q

What does the major groove attract?

A

Larger proteins.

55
Q

What is heredity?

A

The transmission of characteristics from parents to offspring by genes.

56
Q

How is genetic information carried?

A

In the sequence of bases in DNA (quaternary digital code).

57
Q

What is good about genetic information being carried in the sequence of DNA bases?

A

Can easily be stored and analysed by a computer (binary code) in bioinformatics.

(Bioinformatics - software tools for understanding biological data)

58
Q

How stable is DNA?

A

Very stable - lasts for many years.

59
Q

Why does DNA have complementary strands?

A

For repair template.

60
Q

How is DNA faithfully replicated?

A

Semi-conservative replication - each new DNA molecule is made of one new strand and one original strand.

61
Q

What process encodes the sequence of proteins?

A

Transcription

62
Q

How does DNA change in a controlled way?

A

With point mutations - a single nucleotide is altered.

63
Q

Define genome

A

All the DNA in (the nucleus of) a cell/the complete set of genes in an organism.

Can be of an organelle e.g. small, circular genomes in mitochondria and chloroplasts.

64
Q

What are chromosomes?

A

Nuclear genetic material distributed among discrete units.

65
Q

How are the 22 autosomal and 1 pair of sex chromosomes visualised?

A

Chromosomes isolated from cells during metaphase for a karyotype.

66
Q

When homologous chromosomes replicate, each chromosome has a…

A

Sister chromatid

67
Q

What is seen from an electron micrograph of chromatin from interphase?

A

DNA has a condensed and packed structure when wrapped around histone proteins twice.

68
Q

How can we see the ‘beads-on-a-string’ structure of nucleosomes?

A

The structure can be experimentally decondensed.

69
Q

What forms a nucleosome?

A

DNA wraps around 8 core histone proteins to form nucleosomes (see diagrams on summary sheet and slides).
2 x histone H2A
2 x histone H2B
2 x histone H3
2 x histone H4

70
Q

What is the role of histone 1?

A

To bring the nucleosomes together to form a chromatin fibre.

71
Q

How is chromatin further condensed?

A

By scaffold proteins

72
Q

What is the end result for each DNA molecule?

A

Packaged into a mitotic chromosome 10,000 folds shorter than fully extended length.

73
Q

List two types of chromatin

A

Euchromatin and heterochromatin.

74
Q

Contrast the compactness of the types of chromatin. Explain what this means for the expression of genes.

A

Euchromatin - less compact DNA form so the DNA is accessible and the gene active, meaning this contains genes frequently expressed.

Heterochromatin - more compact DNA form so the DNA is inaccessible and the gene inactive meaning this contains DNA that is not transcribed.

75
Q

What is the base sequence of the complementary strand of DNA?

5′-TGGTCGGAATT-3’

A

5′-AATTCCGACCA-3′

76
Q
A