Intro Biotechnology Flashcards

1
Q

How are small molecules made?

A

-Organic synthesis
-small molecule innovation (alteration of the structure -> such that it acts as an antagonist)
-usually <500 MW, beyond 500 the molecule doesn’t get absorbed well

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2
Q

How are biologics (like antibodies) different from small molecules?

A

-larger (100x)

-more complex, f.e. alkylation on a small molecule, can occur in the para, ortho, or meta position -> with large biologic molecules it is impossible to predict where the alkylation will occur

-structurally less defined

-Synthesis of biologics is made through living organisms or tissue culture

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3
Q

Differences between small molecules and biologics in terms of their properties?

A

Small molecules:
-produced by chemical synthesis
-low MW
-well-defined physiochemical properties (pKa, ionization, lipophilicity -> because they have less ionizable groups)
-stable

Biologics
-biotechnologically produced by host cell lines
-high MW
-complex physiochemical properties
-sensitive to heat and shear (aggregation)

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4
Q

Differences between small molecules and biologics in terms of administration?

A

Small molecules:
-different routes possible
-rapid systemic circulation through blood capillaries
-distribution into any organs/tissues
-often specific toxicity
-nonantigenic

Biologics:
-administered parently
-reach circulation via the lymphatic system (proteolysis can occur)
-distribution only to plasma or extracellular fluid
-receptor-mediated toxicity
-antigenic

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5
Q

Differences between small molecules and biologics in terms of analysis and production

A

Small molecules:
-completely characterized by analytic methods
-easy to purify
-contamination easy to identify and avoid
-not affected by slight changes in production processes

Biologics:
-difficult to characterize
-hard to purify
-a high possibility of contamination
-susceptible to slide changes in the production processes

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6
Q

What is the volume/cost ratio for Biological drugs?

A

-low number (2-3%)
-but high costs (40% of money spent)

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7
Q

Why are biological drugs so expensive?

A

-production cost is similar to small molecules
-target patient population is small -> therefore the price is increased for return on investment

-f.e. Taxol (small molecule) is given to most breast cancer patients, whereas Herceptin is given to only 20% of the patients, bc only 20% have HER2 receptors

-Cetuximab (Erbitux) is only for patients with special conditions, EGFr is overexpressed on the tumor and doesn’t have KRAS and BRA

-high effective -> only given for a few weeks -> span of time needed to cure the disease is short -> less time to get the money back

-rare diseases have small patient numbers

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8
Q

Why are biosimilars not called generics?

A

-for generics, we have identical structures (formulation might be different -> starch instead of cellulose; in the HPLC you would see a peak at the same place for all generics

-for biologics, we have similar but not identical structures
-> if E.coli is used to harvest the biological product instead of yeast, the biosimilar will be somewhat different -> need to check if it is as effective as the original

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9
Q

What are the orphan diseases and the Orphan Drug Act (1983)?

A

-orphan diseases: <200,000 patients/disease (e.g. Tourette’s,
Amyotrophic Lateral Sclerosis (ALS), Cystic Fibrosis
(CF), Duchenne Muscular Dystrophy

-Ensures that a company can have the exclusive right on the market for a orphan disease drug for 7 years -> time to get their money back

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10
Q

Example of active immunity:

A

-Edward Jenner injected closely related cowpox virus into a patient with smallpox -> protection against smallpox

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11
Q

What are the discoveries of Louis Pasteur?

A

-discovered D and L isomeres
-vaccines for rabies, anthrax, and chicken cholera
-preserving milk, beer, and other products -> Pasteurization

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12
Q

Discoveries of Emile von Behring and Kitasato:

A

-took toxins of diphtheria-causing bacteria (whooping cough) and injected it into horses -> Antibodies created -> Serum from the horse with the antibodies are isolated and injected into diphtheria patient -> PASSIVE IMMUNIZATION

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13
Q

Discoveries of Banting and Bests

A

-removed the pancreas of a dog -> the dog became diabetic (bc no insulin production in the pancreas) -> isolated insulin from Langerhans -> injected insulin into the dog -> INSULIN THERAPY

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14
Q

Why is insulin harvested from animals not rejected by the human immune system?

A

-Because there are similar enough to not stimulate an immune response (one amino acid difference)
-porcine and bovine insulin would produce anti-insulin antibodies over time

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15
Q

How is insulin harvested nowadays?

Discovery of Boyer, Cohen, Berg

A

-recombinant DNA technique used to insert a gene of interest in an organism’s genome (f.e. coding insulin in bacteria) -> so that it will produce the protein in large quantities -> harvested and used in humans

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16
Q

How are genes of interest identified?

A

-From databases, or from a protein that is expressed in a cell
-Restriction enzymes cut DNA at specific sites to isolate a gene of interest (these enzymes are produced by bacteria to cut viral nucleotides)

17
Q

How is the gene of interest validated?

A

-overexpression or knockdown of that gene -> to see if it causes any difference in protein concentration
-tools used: siRNA and antisense oligonucleotides

18
Q

How is the gene of interest implemented into bacteria?

A

-inserted into plasmids (circular extrachromosomal DNA - used by bacteria to exchange genes for protection)
-cuts are made by restriction enzymes -> gene is inserted -> the gaps are closed by ligases -> EXPRESSION VECTOR/CONSTRUCT

-to ensure that the insertion has worked, an additional antibiotic resistance gene is implemented -> the bacteria are grown on an agar plate with the antibiotic -> survival of the bacteria will prove the insertion of the gene -> culture the RECOMBINANT BACTERIA

-Transformation of the plasmid into the bacteria is achieved by several heating and cooling cycles or electroporation

19
Q

What is upstream processing?

A

-optimization steps (f.e. optimize conditions, best media, best pH, best temperature) that aim to grow and optimize highly productive strains of transformed bacteria

20
Q

What is downstream processing?

A

-extract, purify, formulate and package the protein, ready to be used