Intro Flashcards

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1
Q

What % of genome is repetitive sequence?

A

~50%

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2
Q

What the non-coding RNA’s?

A
  • rRNA
  • snoRNA
  • miRNA
  • piwiRNA
  • IncRNA
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3
Q

What are miRNA?

A
21-23nt single stranded RNA
Base pair with 3'UTR of mRNA
fine tune translation 
Individual affect different mRNA
1881 human miRNA
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4
Q

What are long non-coding RNA?

A
14, 727 genes 
Roles in regulating gene expression
Inhibitory antisense transcripts
Platforms for assembly of multi protein complexes
Role in nuclear structure
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5
Q

How many mitochondrial and Y ancestors does a person have?

A

1 of each

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6
Q

What are TADs?

A

Topological associating domains - basic structural unit of chromosomes

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7
Q

What are enhancers?

A

Promoter like sequences that are brought into contact with promoter due to DNA looping
Control tissue specific expression

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8
Q

What is a mutation?

A

A change
A rare change
Disease causing

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9
Q

What is a polymorphism?

A

Non disease causing or change found at frequency higher than 1%

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10
Q

What is mutation rate per generation?

How many SNP/s arise over generation?

A

1*10-8

70 new SNP (mostly paternal in origin)

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11
Q

What is autosomal dominant inheritance?

A

Verizon pattern; multiple generations affected

Usually one affected parent

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12
Q

What is autosomal recessive inheritance?

A
Horizontal pattern (sibling affected or no history)
Subsequent sibling has 1 in 4 chance 
In consanguineous families may say affected individuals in multiple generations
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13
Q

What is X linked recessive inheritance pattern?

A

Knights move pattern - affected boys may have affected uncles
No father to son transmission
Females carriers - sons have 1in2 chance of disease and daughters have 1in2 chance of carrier status

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14
Q

What is X linked dominant inheritance?

A

Daughters of affected males are affected - but not their sons
Often milder condition and more variable in females than males

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15
Q

What is mitochondrial inheritance pattern?

A

Vertical pattern
Children of affected males not affected
All children of infected females affect - but is highly variable

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16
Q

What is y linked inheritance pattern?

A

Vertical pattern
All sons of affected males affected
Only affects males

17
Q

When does hardy Weinberg not work?

A

Consanguinity

18
Q

What is Bayes Theroem?

A

Calculated likelihood of an event happening
Combines information from different sources
Modifies the probability of an outcome

19
Q

What are used in Bayes Theroem?

A

Per risk
Conditional risk
Joint risk (prior*conditional)
Final risk (joint of X/ joint of X + joint of y)

20
Q

What is the prior risk?

A

Population risk or increased risk due to family history

21
Q

What state is usually associated to the conditional likelihood,

A

Unaffected

22
Q

What are dichotomous characters?

A

Can draw pedigree as affected or non-affected but it will not fir mendelian pattern

23
Q

What is linkage disequilibrium?

A

Occurrence in members of a population of combinations of linked genes in non p-random proportions

24
Q

What is the HapMap project?

A

Project to explore patterns of linkage disequilibrium in different world populations
Showed existence of haplotype blocks - short blocks of strong linkage disequilibrium

25
Q

What are GWAS studies?

A

Genome-wide association studies
Examination of genome-wide set of genetic variants in different individuals to see if any variant is associated with a trait
Only detect common variants (5% or greater)

26
Q

What is the ACCE framework?

A

Assess value of a test

1) analytical validity
2) clinical validity
3) clinical utility
4) ethical, legal and social aspects

27
Q

How can GWAS data be useful?

A

1) help make screening protocols better targeted
2) suggest novel targets of drug development
3) identify subsets of the disease that would benefit from differential management
4)