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Biochemistry 316 : Metabolism > Integration of metabolism > Flashcards

Integration of metabolism Flashcards

1
Q

What are the effects of leptin and adiponectin ?

A

stops fatty acid synthesis, insulin secretion increases fatty acid oxidation and glucose uptake in muscle and heart

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2
Q

What signaling molecule leptin and adiponectin increase ?

A

AMPK

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3
Q

What are the advantages of LC MS/MS ?

A

LC-MS/MS allows for the detection of many metabolites simultaneously to provide a complex metabolic profile LC-MS/MS is exquisitely sensitive into femtogram (10-15g) range LC-MS/MS can be quantitative LC-MS/MS is fast because it requires little sample preparation

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4
Q

What cycles do hepatic tumours suppress ?

A

Do not do TCA for energy, No peroxisomal activity No processing of fatty acids

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5
Q

What cycles do hepatic tumours upregulate ?

A

Glycolysis & β-Oxidation (for ATP) PPP (for NADPH & Ribose-5-P) Citric Acid Cycle (DNA bases & AAs)

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6
Q

What is the iKnife ?

A

Fine tipped cauterizing knife that uses a vacuum to suck tissue into LC MS/MS for immediate analysis

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7
Q

What is the active form of vitamin D ?

A

1, 25-(OH)2D3 (1, 25, dihydroxy vitamin D)

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8
Q

What is the precursor to active vitamin D ?

A

25-OH-vitamin D

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9
Q

What is the difference between bilayers and membranes ?

A

Membranes are not synthetic, they are not uniform in their fatty acid composition, they contain proteins and cholesterol

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10
Q

What are the phospholipases an where do they cleave ?

A

Phospholipase A1: Cleaves at ester bond of the first fatty acid Phospholipase A2: Cleaves at the ester bond of the second fatty acid
Phospholipase C: Cleaves at the PO bond releasing IP3
Phospholipase D: Cleaves at the PO bond releasing IP2

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11
Q

What is the common prostoglandin precursor ?

A 
Aracadonic acid (20:4Δ<sup>6,8,11,14)</sup>
It is cleaved by phospholipase A<sub>2</sub>

Aracadonic acid is then converted to prostoglandin H2 (PGH2) by Cyclo-Oxygenases (COX 1&2)

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12
Q

What are the products of phospholipase C ?

A

Phosphadityl inositol 4,5-biphosphate (PIP2) is converted to:

inositol 1,4,5- triphosphate (IP3)
and
diacylglycerol (DAG)

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13
Q

What are they 2 parts of taurochloric acid ?

A

Taurochloric acid is a bile salt consisting of a sterol derivitive and taurine (hydrophilic)

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14
Q

What kinds of molecules easily pass through membranes?
Which ones need transporters ?

A

Ions and large uncharged polar molecules need transporters

Small uncharged polar molecules (urea, water, glycerol etc) and hydrophobic molecules (oxygen, CO2, nitrogen, benzene) can pass unaded. (Though they sometimes have transporters to increase speed)

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15
Q

Compare and contrast: artificial phospholipid bilayers & natural membranes.

A

Artificial membranes are created spontaiously in vitro
They do not contain proteins, or cholesterol
Artificial membranes are symmetrical (inside and ourside) and do not contain flippase/flopase/scrabblase, so the phospholipids do not cross inside to outside

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16
Q

How does the cell modify the structure of lipid bilayers to give them the properties of natural membranes?

A

The cell encorporates proteins for signalling, transport, and maintenance,

Cholesterol is added to increase fluidity, and create lipid rafts (with calveolin)

The fatty acids are adjusted to affect fludity and are not symmetrical between the inner and outer layers

17
Q

What is the functional role played by cholesterol in membrane structure?

A

Cholestol affects fluidity of the membrane

Cholesterol helps in the formation of lipid rafts by intercollating between the long unsaturated fatty acids in the raft. These rafts contain claveolin, which dimerize to cause endocytosis.

18
Q

What are the general charges inside and outside of a membrane ?

A

Typically, inside is negative,

Outside is neutral

19
Q

What are 6 common constituants of the outer (cytosolic) leaflet ?

A

Phosphodityl ethanolamine (PE)
Phophadityl choline (PC)
Sphingomyelin (SM)
Glycolipid
PS
Phosphatidylinositol (PI)

20
Q

What are 5 common phospholipids found on the inside of a membrane ?

A

Phosphatidylserine
Phosphaditylinositol
Phosphaditylinositol 4-Phosphate
Phosphatidylinositol 4,5 biphosphate
Phosphaditic acid

also PE

21
Q

What are the proteins that can change the inside/outside direction of a phospholipid ?

A

Flippase (outer to cytosolic leaflet)
Floppase (cytosolic to inner leaflet)
Scramblase (moves 2 phospholipids inopposite directions)

All are ATPases

22
Q

What can ‘flip-flop’ unassisted between membrane leaflets ?

A

Cholesterol

23
Q

Why are lipid rafts thicker than other parts of the membrane ?

A

The raft is composed of longer fatty acids that are interdigitated with cholesterol

24
Q

What is the role of lipid rafts in endocytosis ?

A

The lipid rafts contain the protein caveolin. When dimerized, they form a curve in the membrane, and eventually a trough called caveola. These pocket pinch off to form vesicles

25
Q

6 types of integral membrane

A

Type I: single domain spanning membrane, COO on inside
Type II: single domain spanning membrane, NH3 in inside
Type III: multiple domains spanning membrane, monomer
Type V: multiple domains spanning membrane: multimer
Type IV: lipid linked, anchored only by lipid
Type VI: lipid linked, anchored by lipid and membrane spanning domain

Note tha for type III and V, the most common number of membrane spanning domains is 7.

26
Q

What is a glycocalix and what is its role ?

A

It is a carbohydrate presented on the surface of a cell, for self-identification

27
Q

What exactly do we know about caveolin/caveolae? How are caveolae used by cell?

A

Calveolin dimerizes causing a curve in the surface of the membrane. These curves eventually form a caveola which pinches off and form a vesicle.
This vesicle brings substrates from the intestitial fluid into the cell without allowing it to cross the membrane in a process called endocytosis.

28
Q

Red Blood Cells have a complex cytoskeletal architecture that makes the biconcave disc? What do think happens when there are mutations in any of the proteins depicted in Fig11-20 in Lehninger 6e (eg spectrin)

A

Spectrin is one of the major scaffolding proteins in red blood cells. It causes the biconcave shape found in human RBCs that maximise surface area and facilitate oxygen absorption. A mutation in spectrin may lead to a deformed cell, or cell death, as clevage of spectrin leads to apoptosis.

Camels can alter the spectin on their RBCs to alternate between

29
Q

What is the glycerol - 3 - Phosphate bypass ?

A

It is a way of transferring the NADH reducing power from glycolysis without it crossing the inner mitochondrial membrane

The NADH reduces Dihydroxyacetone phosphate into G3P, which in turn reduces FAD to FADH2.

This is fed to complex Q

30
Q

How does the NADH from glycolysis power the electron transport chain ?

A

It doesnt

It uses the G3P bypass or the malate-aspartate shuttle so that the NADH does not have to cross the inner mitochondrial membrane.

31
Q

What is the malate-aspartate shuttle ?

A

It is a way to bring the reducing power of NADH into the mitochondria

Aspartate is converted to oxaloacetate, then reduced to malate by NADH.
The malate is transported into the mitochondria where it reduces a different NAD molecule.
This turns it back into oxaloacetate, whereupon it is converted back into aspartate and transported back outside the mitochondria

Glutamate / α-ketogluterate are used to ‘hold’ the amino group to convert aspartate to oxaloacetate

32
Q

Compare AND contrast the two shuttles for mitochondrial entry of reducing equivalents (NADH) made in glycolysis.

A

Both the malate-asparte shuttle and G3P bypass are ways to move the reducing power of NADH from glycolysis without moving NAD or NAHD through the inner mitochondrial membrane

The malate-aspartate shuttle reduces aspartate to malate and shuttles the malate across the membrane to regenerate NADH on the other side. It uses 2 separate pools of NAD/NADH

The G3P bypass uses NADH to reduce dihydroxyacetone phosphate to G3P to reduce FAD to FADH2 on the outside of the IMM and feed into complex Q. This is faster, but does not include complex I, and therefore makes less ATP

33
Q

Why do NADH & FADH2 produce different amounts of ATP during ETC and Ox-Phos?

A

NADH is fed into complex I, which pumps 4 H+, before the electrons are transferred to complexes Q, 3, and 4.

FADH2 is fed into complex II, then Q, 3, and 4.

Complex II does not pump any protons

34
Q

Why do we have aquaporins if water can diffuse across the membrane by simple diffusion?

A

It speeds up the rate of diffusion.

It also allows better control of diffusion, which is important in places like the kidney

Biochemistry 316 : Metabolism (7 decks)

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