Infection Flashcards
What gram stain is Neisseria meningitidis?
Gram negative
What antibiotic would you use to treat meningitis in a middle aged person (~19)?
Ceftriaxone
Can you be a carrier of Neisseria meningitidis without having symptoms?
Yes, approximately 25% of the population are carriers
Define infection
An invasion of a hosts tissues by micro organisms
What 3 things may cause disease?
Microbial multiplication
Toxins
Host response
What is microbiotica?
The ecological community of commensal, symbiotic and pathogenic microorganism that literally share our body space. Are normally harmless, or even beneficial, but if transferred to other sites can be harmful.
Describe mechanisms of horizontal transmission
Contact
Inhalation
Ingestion
Describe mechanisms of vertical transmission
Mother –> child
Before or during birth
What are the processes involved in the initiation of infection?
Exposure, adherence, invasion, multiplication, dissemination
What are the patient factors that determine the effect of a disease on a person?
Site of infection
Co-morbidities e.g. Diabetes
What are the pathogen factors that determine the effect of a disease on a person?
Virulence factors (degree of damage caused to host)
Inoculum size
Antimicrobial resistance
What supportive investigations might you do for infections?
FBC - neutrophils, lymphocytes
C Reactive Protein CRP
Blood Chemistry - liver and kidney function tests
Imaging - X-ray, ultrasound, MRI
Histopathology
Bacteriology - swabs, fluids, tissues
MCS (Microscopy, Culture, antibiotic Susceptibility)
Antigen Detection
Nucleic Acid Detection
Virology - antigen, antibody, viral DNA/RNA Detection
What are the types of DNA viruses?
Single stranded non-enveloped
Double stranded non-enveloped
Double stranded enveloped
What are the types of RNA viruses?
Single stranded, positive strand, icosahedral, non-enveloped
Single stranded, negative strand, helical, enveloped
Single stranded, positive strand, icosahedral OR helical, enveloped
Double stranded, icosahedral, non-enveloped
What’s the difference between gram positive and negative bacteria?
Positive - thick peptidoglycan cell wall, retain crystal violet dye thus are purple
Negative - appear red, no thick peptidoglycan cell wall.
What’s the difference between mounds and yeasts?
Mounds are multicellular, whereas yeasts are single celled
What 2 main groups are parasites split into, and what defines them?
Protozoa - single celled
Helminths - multicellular (worms)
What are the classification categories for antibacterial agents?
Bactericidal or bacteriostatic Spectrum - 'broad' vs 'narrow' (but in reality there are lots in between) Target site (mechanism of action) Chemical structure (antimicrobial class)
What are the classification categories for antimicrobial agents?
Antibacterial
Antifungal
Antiviral
Antiprotozoal
What are the 6 ideal features of antimicrobial agents?
Selectively toxic Few adverse effects Reach site of infection Oral/IV formulation Long half life (infrequent dosing) No interference with other drugs
What are the classes of antibacterials?
Cell wall synthesis (beta-lactans, glycopeptides)
Protein synthesis (tetracyclines, aminoglycosides, macrolides)
Nucleic acid synthesis (quinolones)
Cell membrane function (polymixins)
What are the mechanisms of antibiotic resistance?
Drug inactivating enzymes (produced by resistant organisms) e.g. Beta-lactamases, aminoglycoside enzymes Altered target (target enzyme has lowered affinity for drug e.g. meticillin, macrolide resistance) Altered uptake (decreased permeability e.g. Beta-lactams/increased efflux e.g. Tetracyclines)
What are the 2 mechanisms to measure antibiotic activity?
Disk testing
Minimum inhibitory concentration (gives numerical answer)
List 3 forms of bets-lactam drug
Penicillins
Cephalosporins
Carbapenems
List 2 types of penicillin (mainly active against streptococci) and what they’re notably active against
Amoxicillin- also has some activity against gram-negatives
Flucloxacillin - active against staphylococci and streptococci
What are penicillins mainly active against?
Streptococci
List 2 beta lactamase inhibitor combinations
Co-amoxiclav- active against gram negatives, staphylococci, streptococci and anaerobes.
Pipercillin/tazobactam - as above, only even better against gram negative, including pseudomonas
What are cephalosporins active against?
Generations with increased gram negative, or gram positives. Broad spectrum, but no anaerobic activity.
Give an example of a celhalosporin, and what it is used for
Ceftriaxone has good activity in the CNS, so if used for meningitis
Give an example of a meropenem
Meropenem
Give some features of meropenem
Very broad spectrum (including anaerobes). Active against most gram negatives, and generally safe in penicillin allergy
Give an example of a glycopeptide
Vancomycin
Give some features of vancomycin
Active against most gram positive. Not absorbed (oral for C. difficile only). Therapeutic drug monitoring required (narrow therapeutic window)
Some enterococci resistance, although resistance in staphs rare
Give an example of a tetracycline
Doxycycline
Give some features of doxycycline
Oral use only. Broad spectrum, but specific use in penicillin allergy, usually for gram positive. Active in atypical pathogens in pneumonia. Active against chlamydia and some protozoa. Shouldn’t be give to children <12yrs
Give an example of an aminoglycoside
Gentamicin
Give some features about gentamicin
Profound activity against gram negatives. Good activity in blood/urine. Potentially neohrotoxic/ototoxic. Therapeutic drug monitoring required. Generally reserved for severe gram negative sepsis
Give an example of a macrolide
Erythromycin
Give some features about erythromycin
Well distributed including intracellular penetration. Alternative to penicillin for mild gram positive infections. Also active against atypical respiratory pathogens
Give an example of a quinolone
Ciprofloxacin
Give some features of ciprofloxacin
Inhibits DNA gyrase. Very active against gram negatives. Also active against atypical pathogens. Increasing resistance and risk of c. Difficile
What is trimethoprim used for?
UTI
What is trimethoprim called when combined with sulphamethoxazole?
Co-trimoxazole
What is co-trimoxazole used for?
Used to treat PCP, and also has activity against MRSA
What are the 2 types of antifungal, and how do they work?
Azoles (inhibit cell membrane synthesis, active against yeast/moulds)
Polymers (inhibit cell membrane function)
Give an example of an azole antifungal drug, and what it’s used to treat
Fluconazole, used to treat candida
Give an example of an antiviral, how it works and what it’s used to treat
Aciclovir. Phosphorylation inhibits viral DNA polymerase, e.g. Herpes simplex
What is metronidazole active against?
Anaerobic bacteria and Protozoa.
Antibacterial and antiprotozoal agent
Define sepsis
A life threatening organ dysfunction due to a dysregulated hose response to infection. Mortality drastically changes for every hour it goes unnoticed
Define septic shock
Persisting hypotension requiring treatment to maintain blood pressure despite fluid resuscitation
What is bacteraemia?
The presence of bacteria in the blood (with or without clinical features )
What is a blanching rash?
It ‘disappears’ on pressure
What is septicaemia?
An outdated term for generalised sepsis
What are Early Warning Signs (EWS)?
Basic observations (RR, HR, BR, BP, Temp)
List some ‘red flags’
Unresponsive
Low BP
High RR
What is significant about ‘red flags’?
Immediate action is required - inform senior Dr, send urgent investigations, refer to ICU
What is the sepsis six?
Oxygen Blood cultures IV antibiotics Fluid challenge Lactate Measure urine output
What investigations might you do for sepsis?
FBC Urea and electrolytes Blood sugar Liver function tests CRP Coagulation Blood gases Other microbiology samples
What are the stages of the inflammatory cascade?
Local - endotoxins bind to macrophages. Cytokines and tissue necrosis factors and interleukins e.g. TNF-alpha, stimulates inflammatory response and recruits RE system
Systemic - Cytokines released into circulation, stimulates growth factors, macrophages and platelets
Sepsis - infection is not controlled. Cytokines lead to activation of humoral cascades and RE system. Circulatory insults, DIC and organ injury.
How does sepsis effect coagulation?
Cytokines initiate production of thrombin and thus promote coagulation
Cytokines inhibit fibrinolysis
Coagulations cascade leads to microvascular thrombosis, hence organ iscaemia, dysfunction and failure
Microvascular injury is the major cause of shock and multiorgan failure
What is the major cause of shock and multiorgan failure in sepsis?
Coagulations cascade activation, leads to microvascular thrombosis, hence organ iscaemia, dysfunction and failure.
What are the factors effecting the outcome of an infection?
Infectivity of pathogen, virulence/mechanism of infection, patients immune response, management
Define immune system
Cells and organs that contribute to immune defences against infectious and non-infectious conditions (Self Vs Non-Self)
Define infectious disease
When the pathogen succeeds in evading and/or overwhelming the hosts immune defences
What are the roles of the immune system?
Pathogen recognition
Containing/eliminating the infection
Regulating itself - minimum damage to hose, stop when done
Remembering pathogens - immunisation
Describe some basic futures of innate immunity
Fast, non specific, no memory, no change in intensity
Describe some basic futures of adaptive immunity
Slow (days), specific, immunologic memory, changes in intensity (differentiates between cell types)
What are the first immunological line of defences?
Physical barriers (skin, mucous membranes, bronchial cilia) Physiological barriers (diarrhoea, vomiting, coughing, sneezing) Chemical barriers (low pH, antimicrobial molecules e.g. Lysozyme, IgA, gastric acid, pepsin, beta-defensins) Biological barriers (normal flora - compete with pathogens, and produce antimicrobial chemicals and vitamins)
Describe what the immunological first line of defence is
Factors that prevent entry and limit growth of pathogens
What might happen if normal flora are depleted by antibiotics? Give examples
Succumb to disease as no pathogenic organisms no longer contained as normal flora are depleted
E.g. Sever colitis (clostridium difficile)
Thrush (Candida albicans)
What is the second immunological line of defence?
Phagocytes/chemicals. Inflammation (to contain and clear the infection)
Phagocyte - microbe interaction. The recognition process, then killing of infectious microbe.
What do dendritic cells do?
Present antigens to T cells. Part of acquired immune system
What are PAMPs? What are they used for?
Pathogen Associated Molecular Patterns
E.g. Carbohydrates, lipids, proteins, nucleic acids.
Used for recognition of pathogens by binding to Pathogen Recognition Receptors (PRRs) on phagocytes
What are PRRs
Pathogen Recognition Receptors
On phagocytes, enable recognition of pathogen when PAMPs bind
What is opsonisation?
Enhanced attachment of phagocytes and defence microbes (e.g. C3b, C4b. Antibodies IgG, IgM)
What do acute phase proteins do? Give 2 examples
They are essential in clearing encapsulated bacteria e.g. Neisseria meningitidis, streptococcus pneumoniae
E.g. C-reactive protein CRP
Mannose-binding lectin (MBL)
What are the stages of phagocytosis?
Recognition, Engulfment, Degradation,
What are phagocytes killing mechanisms?
Oxygen dependent pathway - toxic O2 products e.g. H2O2 produced (respiratory burst)
Oxygen independent pathway - lysozyme, lactoferrin/transferrin, cationic proteins, proteolytic and hydrolytic enzymes
How many serum proteins are there in the complement system? Which are the most important?
20 serum proteins
C1-C9 most important
What are the 2 activating pathways for the complement system?
MBL pathway - initiated when MBL binds to mannose containing residues of proteins, found on many microbes (e.g. Salmonella spp, Candida albicans)
Alternative pathway - initiated by cell surface microbial constituents (e.g. Endotoxins on E. Coli)
What do C3a and C5a of the complement system do?
Recruitment of phagocytes
What do C3b - C4b of the complement system do?
Opsonisation of pathogens
What do C5 - C9 of the complement system do?
Killing of pathogens (membrane attack complex)
What type of cell is reduced in number when small/no spleen is present?
Neutrophils
What does the 1 st line of deference against pathogens do?
Limits entry and growth of pathogens at portals of entry
What does the 2nd line of defence against pathogens do?
Contains and eliminates infection
What do macrophages do?
In all organs. Phagocytise microbes and parent antigens to T cells. Produce cytokines and chemokines.
What do monocytes do?
Circulate in blood. Recruited to infection site and differentiate into macrophages.
What do neutrophils do?
Increased during infection. 60% of blood leukocytes, recruited by chemokines. Ingest and destroy bacteria
What do basophils/mast cells do?
Early actors of inflammation (histamine!). Important in allergic responses.
What do eosinophils do?
Defence against multi-cellular parasites
What do natural killer cells do?
Kill abnormal host cells
What do dendritic cells do?
Present microbial agents to T cells (aquired immunity)
What is a ‘healthcare infection’?
Any infection which was acquired in association with healthcare - doesn’t have to be in a hospital. Includes workers and visitors.
Mustn’t have been present or incubating at time of admission (onset at least 48hrs after admission)
What are the 4 Ps of infection?
Patient
Pathogen
Practise
Place
Briefly explain ‘patient’ as one of the 4 Ps of infection.
General and specific patient risk factors. Interactions with other patients, healthcare workers, visitors.
Briefly explain ‘pathogen’ as one of the 4 Ps of infection.
Virulence factors. Ecological interactions (other bacteria, antibiotics/disinfectants)
Briefly explain ‘practice’ as one of the 4 Ps of infection.
General and specific activities of healthcare workers. Policies and their implementation. Organisational structure and engagement. Regional and national political initiatives. Leadership at all levels from government to the ward.
Briefly explain ‘place’ as one of the 4 Ps of infection.
Healthcare environment. Fixed and variable features. Toilets, hand wash basins, furniture cleaning, medical devices (single use), Positive/negative pressure rooms, theatres….
What does I-Five for infectious patients stand for?
Identify Isolate Investigate Inform Initiate
What is the ONLY way to activate T cells?
Via an antigen presenting cell
What are the features of an antigen presenting cell?
In a strategic location - B and T cell interaction (skin, mucous membranes, lymphoid organs, blood circulation) Pathogen capture (phagocytosis, macropinocytosis soluble particles) Diversity in pathogen sensors (PRRs) (extracellular/bacteria and intracellular/viral pathogens)
Name 4 types of antigen presenting cell
Dendritic cell
Langerhans cells
Macrophages
B cells (BCR)
Where are dendritic cells found?
Lymph nodes, mucous membranes, blood
To which cells do dendritic cells present antigens to?
T cells and B cells
Where are langerhans cells found?
Skin
To which cells do langerhans cells present antigens to?
T cells
Where are B cells found?
Lymphoid tissue
To which cells do macrophages present antigens to?
T cells
To which cells do B cells present antigens to?
T cells
What does PAMP stand for?
Pathogen associated molecular pattern
What does MHC stand for with regards to immunity?
Major histocompatibility complex
What are the two classes MHC can found, and where are they located?
Class 1 molecules - found on all nucleated cells
Class 1 molecules - found on dendritic cells, macrophages, B cells.
What can MHC (major histocompatibility complex) also be called?
Human Leukocyte Antigen (HLA)
What are the key features of MHC (class 1 and 2) molecules?
Co-dominate expression - both parental genes are expressed (increases number of different MHC molecules)
Polymorphic genes - different alleles among different individuals (increases presentation of different antigens/microbes)
What is the main function of MHC class 1 molecules?
Present peptides from intracellular microbes
What is the main function of MHC class 2 molecules?
Present peptides from extracellular microbes
What cells are responsive to MHC class 1?
CD8+ T cells
What cells are responsive to MHC class 2?
CD4+ T cells
What structural feature gives MHC molecules broad specificity? (Many peptides presented by the same MHC molecule)
Peptide binding cleft has a variable region with highly polymorphic residues
What is an MHC?
The protein on an antigen presenting cell, which actually presents the antigen to the WBC
How do MHC molecules effect susceptibility to infections?
Susceptibility to infections depends on the types of MHC molecules - e.g. Elite controllers of HIV
Why are some people ‘elite controllers’, or ‘long term nonprogressors’ for HIV?
Their MHC molecules present key peptides for the survival of the (unmutated) virus, so have an effective T cell response
Generally have a high CD4+ T cell count
What are possible clinical problems with MHC molecules?
Major cause for organ transplant rejection (HLA molecules mismatch between donor and recipient - graft versus host reaction)
HLA association and autoimmune disease - insulin dependent diabetes mellitus, ankylosing spondylitis
What is an allograft? I
A tissue/organ transplant from donor of the same species as recipient, but not genetically identical
Describe the process by which humoral immunity is initiated
Extracellular microbes (e.g. Bacteria, helminth, fungi…) are presented via exogenous pathways by MHC class 2 molecules to CD4+ T cells
Describe the process by which cell-dependent immunity is initiated
Intracellular microbes (viruses, bacteria, protozoa) are presented via the exogenous or endogenous pathway by MHC class 1 molecules to CD8+ T cells, producing cytotoxic T cells or by MHC class 2 molecules to CD4+ T cells, activating macrophages, B cells and complement
What do MHC class 1 cells activate?
CD8+ T cells, which activates cytotoxic T cells
What do MHC class 2 cells activate?
CD4+ T cells, which activate complement, B cells (antibody) ect
What must be activated before CD8+ T cells can be activated, leading to cytotoxic T cells?
CD4+ cells (aiding humoral immunity)
Where do T lymphocytes mature?
In the thymus
What antigen receptor do T lymphocytes use?
T cell receptor TCR
What causes TCR diversity in T lymphocytes?
Gene rearrangement
Name some types of T cells
CD3+, CD4+ (TH1, TH2, TH17 cells)
CD3+, CD8+ (cytotoxic T cells, CTL)
Can T lymphocytes form memory cells?
Yes
What cytokines do CD4+ TH1 (T lymphocyte) cells produce?
TNFalpha
IFNgamma
What cytokines do CD4+ TH2 (T lymphocyte) cells produce?
IL-4
IL-5
IL-10
What cytokines do CD4+ -TH17 (T lymphocyte) cells produce?
IL-17
What does a TCR (T cell receptor) do?
Antigen recognition
What does a CD3 molecule do on the surface of a T lymphocyte?
Co-receptor molecules, involved in signal transduction
What is costimulation?
Activation of naïve CD4+ T cells requires 2 stimulations, one antigen specific via TCR, the other is antigen nonspecific on membrane of APC
If an APC presents MHC to TCR on T cell, what’s its response?
Apoptosis, anergy
If an APC presents MHC to TCR on T cell, AND CD80/86 to CD28, what’s the T cells response?
Proliferation
Differentiation
Effector function
If an APC presents MHC to TCR on T cell, AND CD80/86 to CTLA-4 on T cell, what’s the T cells response?
Cell cycle arrest
What T cells deal with intracellular microbes?
TH1